RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 CLIC4Q9Y696 253 aa15.22■□□□□ 0.03
SHMT2-219ENST00000555563 C5orf67F2Z3F1 127 aa15.21■□□□□ 0.03
SHMT2-219ENST00000555563 H3BNC9 293 aa15.21■□□□□ 0.03
SHMT2-219ENST00000555563 INO80B-WBP1J3KQ70 363 aa15.21■□□□□ 0.03
SHMT2-219ENST00000555563 HOXA2O43364 376 aa15.21■□□□□ 0.03
SHMT2-219ENST00000555563 TSPAN1O60635 241 aa15.21■□□□□ 0.03
SHMT2-219ENST00000555563 ERLIN2O94905 339 aa15.21■□□□□ 0.03
SHMT2-219ENST00000555563 EYA4O95677 639 aa15.21■□□□□ 0.03
SHMT2-219ENST00000555563 HOXA11P31270 313 aaPredicted RBP15.21■□□□□ 0.03
SHMT2-219ENST00000555563 BMPR1AP36894 532 aa15.21■□□□□ 0.03
SHMT2-219ENST00000555563 POU5F1BQ06416 359 aa15.21■□□□□ 0.03
SHMT2-219ENST00000555563 GPM6BQ13491 265 aa15.21■□□□□ 0.03
SHMT2-219ENST00000555563 PTPAQ15257 358 aa15.21■□□□□ 0.03
SHMT2-219ENST00000555563 CLLU1OSQ5K130 101 aa15.21■□□□□ 0.03
SHMT2-219ENST00000555563 HYIQ5T013 277 aa15.21■□□□□ 0.03
SHMT2-219ENST00000555563 AK8Q96MA6 479 aa15.21■□□□□ 0.03
SHMT2-219ENST00000555563 PLIN2Q99541 437 aa15.21■□□□□ 0.03
SHMT2-219ENST00000555563 C11orf84Q9BUA3 381 aaPredicted RBP15.21■□□□□ 0.03
SHMT2-219ENST00000555563 RUSC1Q9BVN2 902 aa15.21■□□□□ 0.03
SHMT2-219ENST00000555563 NFKBIZQ9BYH8 718 aa15.21■□□□□ 0.03
SHMT2-219ENST00000555563 TMEM117Q9H0C3 514 aa15.21■□□□□ 0.03
SHMT2-219ENST00000555563 FAM105AQ9NUU6 356 aa15.21■□□□□ 0.03
SHMT2-219ENST00000555563 DNM3Q9UQ16 869 aa15.21■□□□□ 0.03
SHMT2-219ENST00000555563 ATG2AQ2TAZ0 1938 aa15.21■□□□□ 0.02
SHMT2-219ENST00000555563 RAB27AP51159 221 aa15.2■□□□□ 0.02
SHMT2-219ENST00000555563 PCBP1Q15365 356 aaKnown RBP eCLIP15.2■□□□□ 0.02
SHMT2-219ENST00000555563 AMHR2Q16671 573 aa15.2■□□□□ 0.02
SHMT2-219ENST00000555563 TMEM119Q4V9L6 283 aa15.2■□□□□ 0.02
SHMT2-219ENST00000555563 CDCA2Q69YH5 1023 aaPredicted RBP15.2■□□□□ 0.02
SHMT2-219ENST00000555563 ABI1Q8IZP0 508 aa15.2■□□□□ 0.02
SHMT2-219ENST00000555563 CASD1Q96PB1 797 aa15.2■□□□□ 0.02
SHMT2-219ENST00000555563 ZSCAN16Q9H4T2 348 aaPredicted RBP15.2■□□□□ 0.02
SHMT2-219ENST00000555563 SPTBN5Q9NRC6 3674 aaKnown RBP15.2■□□□□ 0.02
SHMT2-219ENST00000555563 PRRC2BQ5JSZ5 2229 aaKnown RBP15.2■□□□□ 0.02
SHMT2-219ENST00000555563 MEIS3P2A8K0S8 358 aa15.19■□□□□ 0.02
SHMT2-219ENST00000555563 B4GALT5O43286 388 aa15.19■□□□□ 0.02
SHMT2-219ENST00000555563 EOMESO95936 686 aa15.19■□□□□ 0.02
SHMT2-219ENST00000555563 RB1P06400 928 aa15.19■□□□□ 0.02
SHMT2-219ENST00000555563 SKIP12755 728 aa15.19■□□□□ 0.02
SHMT2-219ENST00000555563 LONP1P36776 959 aaKnown RBP15.19■□□□□ 0.02
SHMT2-219ENST00000555563 NAMPTP43490 491 aa15.19■□□□□ 0.02
SHMT2-219ENST00000555563 CEBPZQ03701 1054 aaKnown RBP15.19■□□□□ 0.02
SHMT2-219ENST00000555563 LONRF3Q496Y0 759 aa15.19■□□□□ 0.02
SHMT2-219ENST00000555563 TJAP1Q5JTD0 557 aa15.19■□□□□ 0.02
SHMT2-219ENST00000555563 UBXN11Q5T124 520 aa15.19■□□□□ 0.02
SHMT2-219ENST00000555563 CABP7Q86V35 215 aa15.19■□□□□ 0.02
SHMT2-219ENST00000555563 LRRC43Q8N309 656 aa15.19■□□□□ 0.02
SHMT2-219ENST00000555563 SPRYD3Q8NCJ5 442 aa15.19■□□□□ 0.02
SHMT2-219ENST00000555563 HELQQ8TDG4 1101 aa15.19■□□□□ 0.02
SHMT2-219ENST00000555563 LPPQ93052 612 aa15.19■□□□□ 0.02
SHMT2-219ENST00000555563 MRPL38Q96DV4 380 aaKnown RBP15.19■□□□□ 0.02
SHMT2-219ENST00000555563 CPB2Q96IY4 423 aa15.19■□□□□ 0.02
SHMT2-219ENST00000555563 CDK5RAP3Q96JB5 506 aa15.19■□□□□ 0.02
SHMT2-219ENST00000555563 USP28Q96RU2 1077 aa15.19■□□□□ 0.02
SHMT2-219ENST00000555563 KIFC3Q9BVG8 833 aa15.19■□□□□ 0.02
SHMT2-219ENST00000555563 PLVAPQ9BX97 442 aa15.19■□□□□ 0.02
SHMT2-219ENST00000555563 NT5C3AQ9H0P0 336 aa15.19■□□□□ 0.02
SHMT2-219ENST00000555563 POLD4Q9HCU8 107 aa15.19■□□□□ 0.02
SHMT2-219ENST00000555563 LMCD1Q9NZU5 365 aa15.19■□□□□ 0.02
SHMT2-219ENST00000555563 PCDHB2Q9Y5E7 798 aa15.19■□□□□ 0.02
SHMT2-219ENST00000555563 GRM6O15303 877 aa15.18■□□□□ 0.02
SHMT2-219ENST00000555563 SSBP05455 408 aaKnown RBP eCLIP15.18■□□□□ 0.02
SHMT2-219ENST00000555563 ARF4P18085 180 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-219ENST00000555563 MARCKSP29966 332 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-219ENST00000555563 UBA7P41226 1012 aa15.18■□□□□ 0.02
SHMT2-219ENST00000555563 MAPK7Q13164 816 aa15.18■□□□□ 0.02
SHMT2-219ENST00000555563 PTPROQ16827 1216 aa15.18■□□□□ 0.02
SHMT2-219ENST00000555563 SPOUT1Q5T280 376 aaKnown RBP15.18■□□□□ 0.02
SHMT2-219ENST00000555563 RINT1Q6NUQ1 792 aa15.18■□□□□ 0.02
SHMT2-219ENST00000555563 NOTUMQ6P988 496 aa15.18■□□□□ 0.02
SHMT2-219ENST00000555563 LRRC55Q6ZSA7 311 aa15.18■□□□□ 0.02
SHMT2-219ENST00000555563 ZBTB8OSQ8IWT0 167 aa15.18■□□□□ 0.02
SHMT2-219ENST00000555563 DAW1Q8N136 415 aa15.18■□□□□ 0.02
SHMT2-219ENST00000555563 DEPTORQ8TB45 409 aa15.18■□□□□ 0.02
SHMT2-219ENST00000555563 LRRC15Q8TF66 581 aa15.18■□□□□ 0.02
SHMT2-219ENST00000555563 KIFAP3Q92845 792 aa15.18■□□□□ 0.02
SHMT2-219ENST00000555563 EIF2AQ9BY44 585 aaKnown RBP15.18■□□□□ 0.02
SHMT2-219ENST00000555563 CWH43Q9H720 699 aa15.18■□□□□ 0.02
SHMT2-219ENST00000555563 TYW1Q9NV66 732 aaKnown RBP15.18■□□□□ 0.02
SHMT2-219ENST00000555563 FBXO2Q9UK22 296 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-219ENST00000555563 PLXNA4Q9HCM2 1894 aa15.18■□□□□ 0.02
SHMT2-219ENST00000555563 SLC26A4O43511 780 aa15.17■□□□□ 0.02
SHMT2-219ENST00000555563 ZNF623O75123 536 aa15.17■□□□□ 0.02
SHMT2-219ENST00000555563 HIP1RO75146 1068 aa15.17■□□□□ 0.02
SHMT2-219ENST00000555563 CSPG5O95196 566 aa15.17■□□□□ 0.02
SHMT2-219ENST00000555563 ITGB1P05556 798 aa15.17■□□□□ 0.02
SHMT2-219ENST00000555563 AXLP30530 894 aa15.17■□□□□ 0.02
SHMT2-219ENST00000555563 PPP2R5AQ15172 486 aa15.17■□□□□ 0.02
SHMT2-219ENST00000555563 SKIV2LQ15477 1246 aaKnown RBP15.17■□□□□ 0.02
SHMT2-219ENST00000555563 FOXD4L5Q5VV16 416 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-219ENST00000555563 PPP4R3CPQ6ZMV5 832 aa15.17■□□□□ 0.02
SHMT2-219ENST00000555563 C1orf186Q6ZWK4 172 aa15.17■□□□□ 0.02
SHMT2-219ENST00000555563 KCTD17Q8N5Z5 321 aa15.17■□□□□ 0.02
SHMT2-219ENST00000555563 KLHL23Q8NBE8 558 aa15.17■□□□□ 0.02
SHMT2-219ENST00000555563 COLGALT1Q8NBJ5 622 aa15.17■□□□□ 0.02
SHMT2-219ENST00000555563 FOXD4L4Q8WXT5 416 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-219ENST00000555563 P2RX5Q93086 422 aa15.17■□□□□ 0.02
SHMT2-219ENST00000555563 CCDC51Q96ER9 411 aa15.17■□□□□ 0.02
SHMT2-219ENST00000555563 IFT74Q96LB3 600 aa15.17■□□□□ 0.02
SHMT2-219ENST00000555563 CCDC113Q9H0I3 377 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms