RNA–Protein interactions for RNA: ENST00000555317.5

SRP54-206, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 644 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-206ENST00000555317 C17orf80Q9BSJ5 609 aa13.4□□□□□ -0.26
SRP54-206ENST00000555317 MMTAG2Q9BU76 263 aaKnown RBP13.4□□□□□ -0.26
SRP54-206ENST00000555317 C2orf40Q9H1Z8 148 aa13.4□□□□□ -0.26
SRP54-206ENST00000555317 AGPAT5Q9NUQ2 364 aa13.4□□□□□ -0.26
SRP54-206ENST00000555317 COL4A4P53420 1690 aaPredicted RBP13.4□□□□□ -0.26
SRP54-206ENST00000555317 FNDC1Q4ZHG4 1894 aaPredicted RBP13.4□□□□□ -0.26
SRP54-206ENST00000555317 MYH11P35749 1972 aa13.4□□□□□ -0.27
SRP54-206ENST00000555317 A0A0U1RQF3 1178 aa13.39□□□□□ -0.27
SRP54-206ENST00000555317 EPOPA6NHQ4 379 aa13.39□□□□□ -0.27
SRP54-206ENST00000555317 EOMESO95936 686 aa13.39□□□□□ -0.27
SRP54-206ENST00000555317 AXLP30530 894 aa13.39□□□□□ -0.27
SRP54-206ENST00000555317 FAM189BP81408 668 aa13.39□□□□□ -0.27
SRP54-206ENST00000555317 DMP1Q13316 513 aaPredicted RBP13.39□□□□□ -0.27
SRP54-206ENST00000555317 PTPROQ16827 1216 aa13.39□□□□□ -0.27
SRP54-206ENST00000555317 EPC2Q52LR7 807 aa13.39□□□□□ -0.27
SRP54-206ENST00000555317 HYIQ5T013 277 aa13.39□□□□□ -0.27
SRP54-206ENST00000555317 NOTUMQ6P988 496 aa13.39□□□□□ -0.27
SRP54-206ENST00000555317 PPM1EQ8WY54 764 aa13.39□□□□□ -0.27
SRP54-206ENST00000555317 ZNF689Q96CS4 500 aaPredicted RBP13.39□□□□□ -0.27
SRP54-206ENST00000555317 PGBD4Q96DM1 585 aa13.39□□□□□ -0.27
SRP54-206ENST00000555317 CCDC51Q96ER9 411 aa13.39□□□□□ -0.27
SRP54-206ENST00000555317 C11orf84Q9BUA3 381 aaPredicted RBP13.39□□□□□ -0.27
SRP54-206ENST00000555317 TIPINQ9BVW5 301 aa13.39□□□□□ -0.27
SRP54-206ENST00000555317 NFKBIZQ9BYH8 718 aa13.39□□□□□ -0.27
SRP54-206ENST00000555317 TRIM6Q9C030 488 aaPredicted RBP13.39□□□□□ -0.27
SRP54-206ENST00000555317 MINDY3Q9H8M7 445 aa13.39□□□□□ -0.27
SRP54-206ENST00000555317 RC3H2Q9HBD1 1191 aaKnown RBP13.39□□□□□ -0.27
SRP54-206ENST00000555317 AAASQ9NRG9 546 aa13.39□□□□□ -0.27
SRP54-206ENST00000555317 CCDC39Q9UFE4 941 aa13.39□□□□□ -0.27
SRP54-206ENST00000555317 PRUNE2Q8WUY3 3088 aa13.39□□□□□ -0.27
SRP54-206ENST00000555317 EYSQ5T1H1 3165 aa13.38□□□□□ -0.27
SRP54-206ENST00000555317 RFXAPO00287 272 aa13.38□□□□□ -0.27
SRP54-206ENST00000555317 F13A1P00488 732 aa13.38□□□□□ -0.27
SRP54-206ENST00000555317 PLA2G4BP0C869 781 aa13.38□□□□□ -0.27
SRP54-206ENST00000555317 FGFR1P11362 822 aa13.38□□□□□ -0.27
SRP54-206ENST00000555317 LIG1P18858 919 aa13.38□□□□□ -0.27
SRP54-206ENST00000555317 NAMPTP43490 491 aa13.38□□□□□ -0.27
SRP54-206ENST00000555317 GATMP50440 423 aa13.38□□□□□ -0.27
SRP54-206ENST00000555317 MBTD1Q05BQ5 628 aa13.38□□□□□ -0.27
SRP54-206ENST00000555317 GRB10Q13322 594 aa13.38□□□□□ -0.27
SRP54-206ENST00000555317 PTPAQ15257 358 aa13.38□□□□□ -0.27
SRP54-206ENST00000555317 SPRED2Q7Z698 418 aa13.38□□□□□ -0.27
SRP54-206ENST00000555317 IFNLR1Q8IU57 520 aaPredicted RBP13.38□□□□□ -0.27
SRP54-206ENST00000555317 HACE1Q8IYU2 909 aa13.38□□□□□ -0.27
SRP54-206ENST00000555317 KRI1Q8N9T8 703 aaKnown RBP13.38□□□□□ -0.27
SRP54-206ENST00000555317 USP28Q96RU2 1077 aa13.38□□□□□ -0.27
SRP54-206ENST00000555317 MRPL9Q9BYD2 267 aaKnown RBP13.38□□□□□ -0.27
SRP54-206ENST00000555317 TMEM117Q9H0C3 514 aa13.38□□□□□ -0.27
SRP54-206ENST00000555317 FAM105AQ9NUU6 356 aa13.38□□□□□ -0.27
SRP54-206ENST00000555317 PRMT7Q9NVM4 692 aaPredicted RBP13.38□□□□□ -0.27
SRP54-206ENST00000555317 KCND2Q9NZV8 630 aa13.38□□□□□ -0.27
SRP54-206ENST00000555317 SRPRBQ9Y5M8 271 aaKnown RBP13.38□□□□□ -0.27
SRP54-206ENST00000555317 MRPL42Q9Y6G3 142 aaKnown RBP13.38□□□□□ -0.27
SRP54-206ENST00000555317 CCDC169A6NNP5 214 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 TSPAN1O60635 241 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 HIP1RO75146 1068 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 KRT18P05783 430 aaKnown RBP13.37□□□□□ -0.27
SRP54-206ENST00000555317 RB1P06400 928 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 PLCG1P19174 1290 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 BMPR1AP36894 532 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 EFNA5P52803 228 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 GPM6BQ13491 265 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 ADGRE1Q14246 886 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 SLC39A14Q15043 492 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 KARSQ15046 597 aaKnown RBP13.37□□□□□ -0.27
SRP54-206ENST00000555317 MAPK6Q16659 721 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 FOXD4L6Q3SYB3 417 aaPredicted RBP13.37□□□□□ -0.27
SRP54-206ENST00000555317 TMEM119Q4V9L6 283 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 CDCA2Q69YH5 1023 aaPredicted RBP13.37□□□□□ -0.27
SRP54-206ENST00000555317 RINT1Q6NUQ1 792 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 GLB1LQ6UWU2 654 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 FOXD4L3Q6VB84 417 aaPredicted RBP13.37□□□□□ -0.27
SRP54-206ENST00000555317 KCNK18Q7Z418 384 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 CRIPAKQ8N1N5 446 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 LRRC43Q8N309 656 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 HELQQ8TDG4 1101 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 RSPH1Q8WYR4 309 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 CLP1Q92989 425 aaKnown RBP13.37□□□□□ -0.27
SRP54-206ENST00000555317 PRIMPOLQ96LW4 560 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 PNMA5Q96PV4 448 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 RUSC1Q9BVN2 902 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 TRAIPQ9BWF2 469 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 PLVAPQ9BX97 442 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 CSRNP2Q9H175 543 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 PCDHB2Q9Y5E7 798 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 PCDHB12Q9Y5F1 795 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 PHLPP2Q6ZVD8 1323 aa13.37□□□□□ -0.27
SRP54-206ENST00000555317 KIAA1671Q9BY89 1806 aa13.36□□□□□ -0.27
SRP54-206ENST00000555317 SPTLC2O15270 562 aa13.36□□□□□ -0.27
SRP54-206ENST00000555317 PRKCBP05771 671 aa13.36□□□□□ -0.27
SRP54-206ENST00000555317 NASPP49321 788 aaPredicted RBP13.36□□□□□ -0.27
SRP54-206ENST00000555317 GRIN1Q05586 938 aa13.36□□□□□ -0.27
SRP54-206ENST00000555317 RAD51AP2Q09MP3 1159 aa13.36□□□□□ -0.27
SRP54-206ENST00000555317 PRPF4BQ13523 1007 aaKnown RBP13.36□□□□□ -0.27
SRP54-206ENST00000555317 DHX8Q14562 1220 aaKnown RBP13.36□□□□□ -0.27
SRP54-206ENST00000555317 SKIV2LQ15477 1246 aaKnown RBP13.36□□□□□ -0.27
SRP54-206ENST00000555317 CCDC85BQ15834 202 aaPredicted RBP13.36□□□□□ -0.27
SRP54-206ENST00000555317 CSPP1Q1MSJ5 1256 aa13.36□□□□□ -0.27
SRP54-206ENST00000555317 LONRF3Q496Y0 759 aa13.36□□□□□ -0.27
SRP54-206ENST00000555317 SPECC1Q5M775 1068 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms