RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 SEMA4AQ9H3S1 761 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 TYW1Q9NV66 732 aaKnown RBP5.87□□□□□ -1.47
LIMA1-212ENST00000552491 GRHL1Q9NZI5 618 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 SWAP70Q9UH65 585 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 CHORDC1Q9UHD1 332 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-212ENST00000552491 INTUQ9ULD6 942 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 GREB1LQ9C091 1923 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-212ENST00000552491 NCANO14594 1321 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 TLDC2A0PJX2 215 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 FAM196BA6NMK8 535 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 ANKRD63C9JTQ0 380 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 CALUO43852 315 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-212ENST00000552491 GCNT3O95395 438 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 NUDT17P0C025 328 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 CCDC172P0C7W6 258 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 TRIM49P0CI25 452 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 TRIM49CP0CI26 452 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 FERP16591 822 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 VCAM1P19320 739 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 RPA1P27694 616 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 HSPA1LP34931 641 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 RDXP35241 583 aaKnown RBP5.87□□□□□ -1.47
LIMA1-212ENST00000552491 SOX5P35711 763 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 MMP13P45452 471 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 DR1Q01658 176 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 SNCBQ16143 134 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 SPDYCQ5MJ68 293 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 FAM182BQ5T319 152 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 TTC27Q6P3X3 843 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 PIGWQ7Z7B1 504 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 TAX1BP1Q86VP1 789 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 JAMLQ86YT9 394 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 ZFPM1Q8IX07 1006 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 LRRC34Q8IZ02 419 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 SYCE1Q8N0S2 351 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 CERS5Q8N5B7 392 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 PIGOQ8TEQ8 1089 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 P3H4Q92791 437 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 SCLT1Q96NL6 688 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 NAP1L4Q99733 375 aaKnown RBP5.87□□□□□ -1.47
LIMA1-212ENST00000552491 PABPC3Q9H361 631 aaKnown RBP5.87□□□□□ -1.47
LIMA1-212ENST00000552491 AZI2Q9H6S1 392 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 DNAJC18Q9H819 358 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 GOPCQ9HD26 462 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 DNAJC12Q9UKB3 198 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 DNM3Q9UQ16 869 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-212ENST00000552491 DAAM1Q9Y4D1 1078 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 PCDHA3Q9Y5H8 950 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 PCDHA1Q9Y5I3 950 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 TAF1LQ8IZX4 1826 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 TCRBV7S2A1N4TA0A589 114 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 CCT8L1PA6NM43 557 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 GOLGA8CPA6NN73 597 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 MPHOSPH10O00566 681 aaKnown RBP5.86□□□□□ -1.47
LIMA1-212ENST00000552491 C21orf2O43822 256 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 RAD21O60216 631 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 MGRN1O60291 552 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 DNAJC8O75937 253 aaPredicted RBP5.86□□□□□ -1.47
LIMA1-212ENST00000552491 TRIM37O94972 964 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 MMEP08473 750 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 TMEM253P0C7T8 217 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 STAT1P42224 750 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 SLCO1A2P46721 670 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 RPL21P46778 160 aaKnown RBP5.86□□□□□ -1.47
LIMA1-212ENST00000552491 FMO5P49326 533 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 PMS2P54278 862 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 EIF3BP55884 814 aaKnown RBP5.86□□□□□ -1.47
LIMA1-212ENST00000552491 GTF2IP78347 998 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 ELF3P78545 371 aaPredicted RBP5.86□□□□□ -1.47
LIMA1-212ENST00000552491 FAM98CQ17RN3 349 aaKnown RBP5.86□□□□□ -1.47
LIMA1-212ENST00000552491 NBPF9Q3BBW0 867 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 ACCSLQ4AC99 568 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 KIAA1755Q5JYT7 1200 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 RC3H1Q5TC82 1133 aaKnown RBP5.86□□□□□ -1.47
LIMA1-212ENST00000552491 VPS36Q86VN1 386 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 CCDC50Q8IVM0 306 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 PRELID2Q8N945 189 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 EPS8L3Q8TE67 593 aaKnown RBP5.86□□□□□ -1.47
LIMA1-212ENST00000552491 SLC20A1Q8WUM9 679 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 CENPTQ96BT3 561 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 FIZ1Q96SL8 496 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 SELENOSQ9BQE4 189 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 CARD9Q9H257 536 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 KDM4CQ9H3R0 1056 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 CNOT10Q9H9A5 744 aaKnown RBP5.86□□□□□ -1.47
LIMA1-212ENST00000552491 SERPINB13Q9UIV8 391 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 VAV3Q9UKW4 847 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 AGAP1Q9UPQ3 857 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 SRCAPQ6ZRS2 3230 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 FRMPD4Q14CM0 1322 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 GTPBP10A4D1E9 387 aaKnown RBP5.86□□□□□ -1.47
LIMA1-212ENST00000552491 FOXO6A8MYZ6 492 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 LCE2BO14633 110 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 SLC16A3O15427 465 aaKnown RBP5.86□□□□□ -1.47
LIMA1-212ENST00000552491 MSH4O15457 936 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 ECM2O94769 699 aaPredicted RBP5.86□□□□□ -1.47
LIMA1-212ENST00000552491 GHRP10912 638 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 CREB1P16220 341 aa5.86□□□□□ -1.47
LIMA1-212ENST00000552491 FGFR4P22455 802 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms