RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 CHAMP1Q96JM3 812 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 PIGSQ96S52 555 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 APOL5Q9BWW9 433 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 PHF7Q9BWX1 381 aaPredicted RBP7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 UBA5Q9GZZ9 404 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 ZMYND12Q9H0C1 365 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 TSPY26PQ9H489 355 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 TMEM63CQ9P1W3 806 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 RWDD3Q9Y3V2 267 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 MYH4Q9Y623 1939 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 LAD1O00515 517 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 SIAH2O43255 324 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 CYTH3O43739 400 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 CAVIN2O95810 425 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 GLP2RO95838 553 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 RB1P06400 928 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 LINC00271P0C7V0 271 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 GHRP10912 638 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 ATP2B1P20020 1258 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 DNAJB1P25685 340 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 DEKP35659 375 aaKnown RBP7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 COASYQ13057 564 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 NR5A1Q13285 461 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 PAN2Q504Q3 1202 aaKnown RBP7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 KANK3Q6NY19 840 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 BTNL9Q6UXG8 535 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 PIK3AP1Q6ZUJ8 805 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 REXO1Q8N1G1 1221 aaKnown RBP7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 GPKOWQ92917 476 aaPredicted RBP eCLIP7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 RMDN1Q96DB5 314 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 PGBD1Q96JS3 809 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 SPATA33Q96N06 139 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 HINFPQ9BQA5 517 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 SDF4Q9BRK5 362 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 AMNQ9BXJ7 453 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 MFSD1Q9H3U5 465 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 CLSTN2Q9H4D0 955 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 EHMT1Q9H9B1 1298 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 JMJD4Q9H9V9 463 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 DACT1Q9NYF0 836 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 PCDHA7Q9UN72 937 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 SRPRBQ9Y5M8 271 aaKnown RBP7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 ATRXP46100 2492 aa7.96□□□□□ -1.14
DEPDC4-208ENST00000549341 ANKRD11Q6UB99 2663 aaPredicted RBP7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 SYCE3A1L190 88 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 HAS3O00219 553 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 PER2O15055 1255 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 TREHO43280 583 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 FOSP01100 380 aaPredicted RBP7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 SMIM10L2AP0DMW4 78 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 SMIM10L2BP0DMW5 78 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 CD46P15529 392 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 LIG1P18858 919 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 MARCKSP29966 332 aaPredicted RBP7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 SYKP43405 635 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 AP3B2Q13367 1082 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 MTMR3Q13615 1198 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 LAMC2Q13753 1193 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 CAMK1Q14012 370 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 STXBP2Q15833 593 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 CDC37Q16543 378 aaPredicted RBP7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 ARHGEF16Q5VV41 709 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 ARL6IP4Q66PJ3 421 aaKnown RBP7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 KREMEN2Q8NCW0 462 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 NSUN6Q8TEA1 469 aaKnown RBP7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 APBB2Q92870 758 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 MTMR8Q96EF0 704 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 RIPOR3Q96MK2 946 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 TIGD1Q96MW7 591 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 CNTNAP3BQ96NU0 1288 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 RMDN3Q96TC7 470 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 CNTNAP3Q9BZ76 1288 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 RAB34Q9BZG1 259 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 SMOC2Q9H3U7 446 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 PSTPIP2Q9H939 334 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 RIC8AQ9NPQ8 531 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 COL20A1Q9P218 1284 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 USP25Q9UHP3 1055 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 PLAGL2Q9UPG8 496 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 MRPL42Q9Y6G3 142 aaKnown RBP7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 FRYLO94915 3013 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 CFAP47Q6ZTR5 3102 aa7.95□□□□□ -1.14
DEPDC4-208ENST00000549341 KMT2BQ9UMN6 2715 aaPredicted RBP7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 LCTP09848 1927 aa7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 MARCH6O60337 910 aa7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 GGPS1O95749 300 aa7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 ITGB1P05556 798 aa7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 GCFC2P16383 781 aaKnown RBP7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 PTPAQ15257 358 aa7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 ZNF174Q15697 407 aa7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 LLGL2Q6P1M3 1020 aa7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 NEK8Q86SG6 692 aa7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 KLHL23Q8NBE8 558 aa7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 FLCNQ8NFG4 579 aa7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 SYTL5Q8TDW5 730 aaPredicted RBP7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 MICAL1Q8TDZ2 1067 aa7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 POF1BQ8WVV4 589 aa7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 CLP1Q92989 425 aaKnown RBP7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 TNFRSF25Q93038 417 aa7.94□□□□□ -1.14
DEPDC4-208ENST00000549341 TAAR1Q96RJ0 339 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms