RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 TATDN1Q6P1N9 297 aa16.28■□□□□ 0.2
USP28-214ENST00000545540 FMO2Q99518 471 aa16.28■□□□□ 0.2
USP28-214ENST00000545540 STK33Q9BYT3 514 aa16.28■□□□□ 0.2
USP28-214ENST00000545540 SUCLA2Q9P2R7 463 aaPredicted RBP16.28■□□□□ 0.2
USP28-214ENST00000545540 APEX2Q9UBZ4 518 aa16.28■□□□□ 0.2
USP28-214ENST00000545540 IPO5O00410 1097 aaKnown RBP16.27■□□□□ 0.2
USP28-214ENST00000545540 CYP26A1O43174 497 aa16.27■□□□□ 0.2
USP28-214ENST00000545540 POLR2MP0CAP2 368 aa16.27■□□□□ 0.2
USP28-214ENST00000545540 ICE2Q659A1 982 aa16.27■□□□□ 0.2
USP28-214ENST00000545540 CCDC26Q8TAB7 109 aa16.27■□□□□ 0.2
USP28-214ENST00000545540 LMBR1Q8WVP7 490 aa16.27■□□□□ 0.2
USP28-214ENST00000545540 RAPGEF5Q92565 580 aa16.27■□□□□ 0.2
USP28-214ENST00000545540 DHX38Q92620 1227 aaKnown RBP16.27■□□□□ 0.2
USP28-214ENST00000545540 SEMA4AQ9H3S1 761 aa16.27■□□□□ 0.2
USP28-214ENST00000545540 HMGB1P1B2RPK0 211 aaPredicted RBP16.27■□□□□ 0.19
USP28-214ENST00000545540 NPEPPSP55786 919 aa16.27■□□□□ 0.19
USP28-214ENST00000545540 SLC47A2Q86VL8 602 aa16.27■□□□□ 0.19
USP28-214ENST00000545540 PLEKHO2Q8TD55 490 aa16.27■□□□□ 0.19
USP28-214ENST00000545540 MGARPQ8TDB4 240 aa16.27■□□□□ 0.19
USP28-214ENST00000545540 ATP8B4Q8TF62 1192 aa16.27■□□□□ 0.19
USP28-214ENST00000545540 RFFLQ8WZ73 363 aa16.27■□□□□ 0.19
USP28-214ENST00000545540 LRRC45Q96CN5 670 aa16.27■□□□□ 0.19
USP28-214ENST00000545540 TMEM39BQ9GZU3 492 aa16.27■□□□□ 0.19
USP28-214ENST00000545540 DBR1Q9UK59 544 aaKnown RBP16.27■□□□□ 0.19
USP28-214ENST00000545540 NHSQ6T4R5 1651 aa16.27■□□□□ 0.19
USP28-214ENST00000545540 SLC16A4O15374 487 aa16.26■□□□□ 0.19
USP28-214ENST00000545540 FOSP01100 380 aaPredicted RBP16.26■□□□□ 0.19
USP28-214ENST00000545540 CEP55Q53EZ4 464 aa16.26■□□□□ 0.19
USP28-214ENST00000545540 PLA2G4FQ68DD2 849 aa16.26■□□□□ 0.19
USP28-214ENST00000545540 MREGQ8N565 214 aa16.26■□□□□ 0.19
USP28-214ENST00000545540 PWWP2AQ96N64 755 aa16.26■□□□□ 0.19
USP28-214ENST00000545540 PCDHB18PQ96TA0 734 aa16.26■□□□□ 0.19
USP28-214ENST00000545540 TRIM7Q9C029 511 aa16.26■□□□□ 0.19
USP28-214ENST00000545540 CD248Q9HCU0 757 aa16.26■□□□□ 0.19
USP28-214ENST00000545540 DDX20Q9UHI6 824 aaKnown RBP16.26■□□□□ 0.19
USP28-214ENST00000545540 DAAM1Q9Y4D1 1078 aa16.26■□□□□ 0.19
USP28-214ENST00000545540 NFIBO00712 420 aa16.26■□□□□ 0.19
USP28-214ENST00000545540 BFSP1Q12934 665 aa16.26■□□□□ 0.19
USP28-214ENST00000545540 CUL1Q13616 776 aa16.26■□□□□ 0.19
USP28-214ENST00000545540 SLC29A2Q14542 456 aa16.26■□□□□ 0.19
USP28-214ENST00000545540 LMBRD2Q68DH5 695 aaPredicted RBP16.26■□□□□ 0.19
USP28-214ENST00000545540 PADI6Q6TGC4 694 aa16.26■□□□□ 0.19
USP28-214ENST00000545540 SLFN11Q7Z7L1 901 aa16.26■□□□□ 0.19
USP28-214ENST00000545540 PI4K2AQ9BTU6 479 aa16.26■□□□□ 0.19
USP28-214ENST00000545540 POLR3CQ9BUI4 534 aaPredicted RBP16.26■□□□□ 0.19
USP28-214ENST00000545540 GLT8D2Q9H1C3 349 aa16.26■□□□□ 0.19
USP28-214ENST00000545540 ITGB5P18084 799 aa16.26■□□□□ 0.19
USP28-214ENST00000545540 PRELPP51888 382 aa16.26■□□□□ 0.19
USP28-214ENST00000545540 TTC27Q6P3X3 843 aa16.26■□□□□ 0.19
USP28-214ENST00000545540 PODNQ7Z5L7 613 aa16.26■□□□□ 0.19
USP28-214ENST00000545540 COL20A1Q9P218 1284 aa16.26■□□□□ 0.19
USP28-214ENST00000545540 COMTP21964 271 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 LRRC14Q15048 493 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 C10orf76Q5T2E6 689 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 CPLX4Q7Z7G2 160 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 OLFML3Q9NRN5 406 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 CENPFP49454 3210 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 GMNCA6NCL1 334 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 TBX3O15119 743 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 PYGMP11217 842 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 PEX3P56589 373 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 ACTN3Q08043 901 aaPredicted RBP16.25■□□□□ 0.19
USP28-214ENST00000545540 B4GALNT4Q76KP1 1039 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 EPS8L3Q8TE67 593 aaKnown RBP16.25■□□□□ 0.19
USP28-214ENST00000545540 RNF25Q96BH1 459 aaPredicted RBP16.25■□□□□ 0.19
USP28-214ENST00000545540 AGPAT1Q99943 283 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 AZI2Q9H6S1 392 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 SUGT1Q9Y2Z0 365 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 MMEP08473 750 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 MYCLP12524 364 aaPredicted RBP16.25■□□□□ 0.19
USP28-214ENST00000545540 ALDH1B1P30837 517 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 PPP2R2AP63151 447 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 FAM182AQ5T1J6 154 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 PRUNE1Q86TP1 453 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 JAMLQ86YT9 394 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 C1orf54Q8WWF1 131 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 RUBCNQ92622 972 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 CABS1Q96KC9 395 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 QTRT2Q9H974 415 aaKnown RBP16.25■□□□□ 0.19
USP28-214ENST00000545540 SLC12A6Q9UHW9 1150 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 TELO2Q9Y4R8 837 aa16.25■□□□□ 0.19
USP28-214ENST00000545540 C21orf2O43822 256 aa16.24■□□□□ 0.19
USP28-214ENST00000545540 EIF2AK2P19525 551 aaKnown RBP16.24■□□□□ 0.19
USP28-214ENST00000545540 LMNB1P20700 586 aa16.24■□□□□ 0.19
USP28-214ENST00000545540 CIITAP33076 1130 aa16.24■□□□□ 0.19
USP28-214ENST00000545540 PPATQ06203 517 aa16.24■□□□□ 0.19
USP28-214ENST00000545540 BMT2Q1RMZ1 405 aa16.24■□□□□ 0.19
USP28-214ENST00000545540 FOXR2Q6PJQ5 311 aa16.24■□□□□ 0.19
USP28-214ENST00000545540 CBWD2Q8IUF1 395 aa16.24■□□□□ 0.19
USP28-214ENST00000545540 SYCE1Q8N0S2 351 aa16.24■□□□□ 0.19
USP28-214ENST00000545540 GPATCH11Q8N954 259 aa16.24■□□□□ 0.19
USP28-214ENST00000545540 NENFQ9UMX5 172 aa16.24■□□□□ 0.19
USP28-214ENST00000545540 GOLGA6L7A0A1B0GV03 622 aa16.24■□□□□ 0.19
USP28-214ENST00000545540 KLRG2A4D1S0 409 aaPredicted RBP16.24■□□□□ 0.19
USP28-214ENST00000545540 CCDC169A6NNP5 214 aa16.24■□□□□ 0.19
USP28-214ENST00000545540 SLC16A3O15427 465 aaKnown RBP16.24■□□□□ 0.19
USP28-214ENST00000545540 CTNND1O60716 968 aaKnown RBP16.24■□□□□ 0.19
USP28-214ENST00000545540 FAM107AO95990 144 aa16.24■□□□□ 0.19
USP28-214ENST00000545540 RPL21P46778 160 aaKnown RBP16.24■□□□□ 0.19
USP28-214ENST00000545540 ARHGAP27Q6ZUM4 889 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms