RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 PGBD4Q96DM1 585 aa13.12□□□□□ -0.31
HDAC4-216ENST00000544989 NSUN3Q9H649 340 aaKnown RBP13.12□□□□□ -0.31
HDAC4-216ENST00000544989 XPNPEP1Q9NQW7 623 aa13.12□□□□□ -0.31
HDAC4-216ENST00000544989 AGPAT5Q9NUQ2 364 aa13.12□□□□□ -0.31
HDAC4-216ENST00000544989 GTF3C3Q9Y5Q9 886 aa13.12□□□□□ -0.31
HDAC4-216ENST00000544989 FSD2A1L4K1 749 aa13.11□□□□□ -0.31
HDAC4-216ENST00000544989 USO1O60763 962 aaKnown RBP13.11□□□□□ -0.31
HDAC4-216ENST00000544989 PDIA4P13667 645 aaKnown RBP13.11□□□□□ -0.31
HDAC4-216ENST00000544989 IBSPP21815 317 aaPredicted RBP13.11□□□□□ -0.31
HDAC4-216ENST00000544989 PPM1AP35813 382 aa13.11□□□□□ -0.31
HDAC4-216ENST00000544989 ATP2C1P98194 919 aaPredicted RBP13.11□□□□□ -0.31
HDAC4-216ENST00000544989 PPP2R5AQ15172 486 aa13.11□□□□□ -0.31
HDAC4-216ENST00000544989 FAM102BQ5T8I3 360 aa13.11□□□□□ -0.31
HDAC4-216ENST00000544989 ZNF598Q86UK7 904 aaKnown RBP13.11□□□□□ -0.31
HDAC4-216ENST00000544989 KSR1Q8IVT5 923 aa13.11□□□□□ -0.31
HDAC4-216ENST00000544989 SNX29Q8TEQ0 813 aa13.11□□□□□ -0.31
HDAC4-216ENST00000544989 ASB2Q96Q27 587 aa13.11□□□□□ -0.31
HDAC4-216ENST00000544989 C2orf40Q9H1Z8 148 aa13.11□□□□□ -0.31
HDAC4-216ENST00000544989 UBN1Q9NPG3 1134 aa13.11□□□□□ -0.31
HDAC4-216ENST00000544989 RAPGEFL1Q9UHV5 662 aa13.11□□□□□ -0.31
HDAC4-216ENST00000544989 DNM3Q9UQ16 869 aa13.11□□□□□ -0.31
HDAC4-216ENST00000544989 COL4A4P53420 1690 aaPredicted RBP13.11□□□□□ -0.31
HDAC4-216ENST00000544989 NLRC5Q86WI3 1866 aa13.1□□□□□ -0.31
HDAC4-216ENST00000544989 K7ELQ4 463 aaPredicted RBP13.1□□□□□ -0.31
HDAC4-216ENST00000544989 CSDE1O75534 798 aaKnown RBP13.1□□□□□ -0.31
HDAC4-216ENST00000544989 CYP11B2P19099 503 aa13.1□□□□□ -0.31
HDAC4-216ENST00000544989 FGFR4P22455 802 aa13.1□□□□□ -0.31
HDAC4-216ENST00000544989 NBR1Q14596 966 aa13.1□□□□□ -0.31
HDAC4-216ENST00000544989 PDE12Q6L8Q7 609 aaKnown RBP13.1□□□□□ -0.31
HDAC4-216ENST00000544989 NOTUMQ6P988 496 aa13.1□□□□□ -0.31
HDAC4-216ENST00000544989 POTEGQ6S5H5 508 aa13.1□□□□□ -0.31
HDAC4-216ENST00000544989 PADI6Q6TGC4 694 aa13.1□□□□□ -0.31
HDAC4-216ENST00000544989 GLB1LQ6UWU2 654 aa13.1□□□□□ -0.31
HDAC4-216ENST00000544989 ZBTB8OSQ8IWT0 167 aa13.1□□□□□ -0.31
HDAC4-216ENST00000544989 HACE1Q8IYU2 909 aa13.1□□□□□ -0.31
HDAC4-216ENST00000544989 RNF169Q8NCN4 708 aa13.1□□□□□ -0.31
HDAC4-216ENST00000544989 KIFAP3Q92845 792 aa13.1□□□□□ -0.31
HDAC4-216ENST00000544989 FAM122AQ96E09 287 aa13.1□□□□□ -0.31
HDAC4-216ENST00000544989 PRIMPOLQ96LW4 560 aa13.1□□□□□ -0.31
HDAC4-216ENST00000544989 AK8Q96MA6 479 aa13.1□□□□□ -0.31
HDAC4-216ENST00000544989 CASD1Q96PB1 797 aa13.1□□□□□ -0.31
HDAC4-216ENST00000544989 NT5C3AQ9H0P0 336 aa13.1□□□□□ -0.31
HDAC4-216ENST00000544989 POLR3FQ9H1D9 316 aaPredicted RBP13.1□□□□□ -0.31
HDAC4-216ENST00000544989 BMP2KQ9NSY1 1161 aaPredicted RBP13.1□□□□□ -0.31
HDAC4-216ENST00000544989 FAM105AQ9NUU6 356 aa13.1□□□□□ -0.31
HDAC4-216ENST00000544989 TYW1Q9NV66 732 aaKnown RBP13.1□□□□□ -0.31
HDAC4-216ENST00000544989 PLAGL2Q9UPG8 496 aa13.1□□□□□ -0.31
HDAC4-216ENST00000544989 PHLPP2Q6ZVD8 1323 aa13.1□□□□□ -0.31
HDAC4-216ENST00000544989 CNTNAP2Q9UHC6 1331 aa13.1□□□□□ -0.31
HDAC4-216ENST00000544989 ARID2Q68CP9 1835 aa13.09□□□□□ -0.31
HDAC4-216ENST00000544989 INO80B-WBP1J3KQ70 363 aa13.09□□□□□ -0.31
HDAC4-216ENST00000544989 FGFR1P11362 822 aa13.09□□□□□ -0.31
HDAC4-216ENST00000544989 CAPSQ13938 189 aa13.09□□□□□ -0.31
HDAC4-216ENST00000544989 THNSL1Q8IYQ7 743 aa13.09□□□□□ -0.31
HDAC4-216ENST00000544989 KLHL23Q8NBE8 558 aa13.09□□□□□ -0.31
HDAC4-216ENST00000544989 SNX21Q969T3 373 aa13.09□□□□□ -0.31
HDAC4-216ENST00000544989 IFT74Q96LB3 600 aa13.09□□□□□ -0.31
HDAC4-216ENST00000544989 TIPINQ9BVW5 301 aa13.09□□□□□ -0.31
HDAC4-216ENST00000544989 KANSL3Q9P2N6 904 aa13.09□□□□□ -0.31
HDAC4-216ENST00000544989 STK39Q9UEW8 545 aa13.09□□□□□ -0.31
HDAC4-216ENST00000544989 PUF60Q9UHX1 559 aaKnown RBP13.09□□□□□ -0.31
HDAC4-216ENST00000544989 KCNG1Q9UIX4 513 aa13.09□□□□□ -0.31
HDAC4-216ENST00000544989 KIAA1024Q9UPX6 916 aa13.09□□□□□ -0.31
HDAC4-216ENST00000544989 LZTS1Q9Y250 596 aa13.09□□□□□ -0.31
HDAC4-216ENST00000544989 VPS37CA5D8V6 355 aaPredicted RBP13.08□□□□□ -0.32
HDAC4-216ENST00000544989 LRRIQ4A6NIV6 560 aa13.08□□□□□ -0.32
HDAC4-216ENST00000544989 EYA4O95677 639 aa13.08□□□□□ -0.32
HDAC4-216ENST00000544989 ITGB1P05556 798 aa13.08□□□□□ -0.32
HDAC4-216ENST00000544989 GLRA2P23416 452 aa13.08□□□□□ -0.32
HDAC4-216ENST00000544989 ALDH7A1P49419 539 aaKnown RBP13.08□□□□□ -0.32
HDAC4-216ENST00000544989 GATMP50440 423 aa13.08□□□□□ -0.32
HDAC4-216ENST00000544989 EFNA5P52803 228 aa13.08□□□□□ -0.32
HDAC4-216ENST00000544989 KRT17Q04695 432 aa13.08□□□□□ -0.32
HDAC4-216ENST00000544989 BMS1Q14692 1282 aaKnown RBP13.08□□□□□ -0.32
HDAC4-216ENST00000544989 PUS10Q3MIT2 529 aaKnown RBP13.08□□□□□ -0.32
HDAC4-216ENST00000544989 CDCA2Q69YH5 1023 aaPredicted RBP13.08□□□□□ -0.32
HDAC4-216ENST00000544989 MRPL10Q7Z7H8 261 aaKnown RBP13.08□□□□□ -0.32
HDAC4-216ENST00000544989 COLGALT1Q8NBJ5 622 aa13.08□□□□□ -0.32
HDAC4-216ENST00000544989 SPPL3Q8TCT6 385 aa13.08□□□□□ -0.32
HDAC4-216ENST00000544989 URGCPQ8TCY9 931 aa13.08□□□□□ -0.32
HDAC4-216ENST00000544989 ASAP3Q8TDY4 903 aa13.08□□□□□ -0.32
HDAC4-216ENST00000544989 CDK5RAP3Q96JB5 506 aa13.08□□□□□ -0.32
HDAC4-216ENST00000544989 ZNF558Q96NG5 402 aa13.08□□□□□ -0.32
HDAC4-216ENST00000544989 BHMT2Q9H2M3 363 aa13.08□□□□□ -0.32
HDAC4-216ENST00000544989 CWH43Q9H720 699 aa13.08□□□□□ -0.32
HDAC4-216ENST00000544989 MINDY3Q9H8M7 445 aa13.08□□□□□ -0.32
HDAC4-216ENST00000544989 DDX19AQ9NUU7 478 aaKnown RBP13.08□□□□□ -0.32
HDAC4-216ENST00000544989 RNF19AQ9NV58 838 aa13.08□□□□□ -0.32
HDAC4-216ENST00000544989 PRMT7Q9NVM4 692 aaPredicted RBP13.08□□□□□ -0.32
HDAC4-216ENST00000544989 PCDHB2Q9Y5E7 798 aa13.08□□□□□ -0.32
HDAC4-216ENST00000544989 FNDC1Q4ZHG4 1894 aaPredicted RBP13.08□□□□□ -0.32
HDAC4-216ENST00000544989 ZMYM2Q9UBW7 1377 aa13.07□□□□□ -0.32
HDAC4-216ENST00000544989 GRM6O15303 877 aa13.07□□□□□ -0.32
HDAC4-216ENST00000544989 TSPAN1O60635 241 aa13.07□□□□□ -0.32
HDAC4-216ENST00000544989 FGF18O76093 207 aa13.07□□□□□ -0.32
HDAC4-216ENST00000544989 ATF7P17544 494 aaPredicted RBP13.07□□□□□ -0.32
HDAC4-216ENST00000544989 NCLP19338 710 aaKnown RBP13.07□□□□□ -0.32
HDAC4-216ENST00000544989 HOXA11P31270 313 aaPredicted RBP13.07□□□□□ -0.32
HDAC4-216ENST00000544989 NAMPTP43490 491 aa13.07□□□□□ -0.32
HDAC4-216ENST00000544989 PLCB3Q01970 1234 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms