RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 KLHL7Q8IXQ5 586 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 GOLGA6L1Q8N7Z2 621 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 ZSWIM2Q8NEG5 633 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 CASKIN2Q8WXE0 1202 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 IFT81Q8WYA0 676 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 PNMA2Q9UL42 364 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 WDR64B1ANS9 1081 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 VWA5AO00534 786 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 SLC16A4O15374 487 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 P4HA2O15460 535 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 TNFAIP3P21580 790 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 RPS12P25398 132 aaKnown RBP19.55■□□□□ 0.72
VIM-209ENST00000544301 NCKAP1LP55160 1127 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 PEX3P56589 373 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 TGFB2P61812 414 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 DALRD3Q5D0E6 543 aaKnown RBP19.55■□□□□ 0.72
VIM-209ENST00000544301 ALS2CLQ60I27 953 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 NSMFQ6X4W1 530 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 SLC35G2Q8TBE7 412 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 RFFLQ8WZ73 363 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 WNK4Q96J92 1243 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 SH3GL2Q99962 352 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 UBE2TQ9NPD8 197 aaPredicted RBP19.55■□□□□ 0.72
VIM-209ENST00000544301 OSGEPQ9NPF4 335 aa19.55■□□□□ 0.72
VIM-209ENST00000544301 IGSF9BQ9UPX0 1349 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 PGRMC1O00264 195 aaKnown RBP19.54■□□□□ 0.72
VIM-209ENST00000544301 LRRN2O75325 713 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 FAM153BP0C7A2 387 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 SFNP31947 248 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 GCLMP48507 274 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 KRT76Q01546 638 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 CETN1Q12798 172 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 FAM153CQ494X1 144 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 EPC2Q52LR7 807 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 PLA2G4FQ68DD2 849 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 ARHGEF19Q8IW93 802 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 PLEKHO2Q8TD55 490 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 CTNNBL1Q8WYA6 563 aaPredicted RBP19.54■□□□□ 0.72
VIM-209ENST00000544301 ATG4CQ96DT6 458 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 HES6Q96HZ4 224 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.54■□□□□ 0.722e-7■■■■□ 26.5
VIM-209ENST00000544301 ANKEF1Q9NU02 776 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 FAM153AQ9UHL3 310 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 BCS1LQ9Y276 419 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 TESPA1A2RU30 521 aaPredicted RBP19.54■□□□□ 0.72
VIM-209ENST00000544301 MAPK13O15264 365 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 BUB1BO60566 1050 aaPredicted RBP19.54■□□□□ 0.72
VIM-209ENST00000544301 SNRPFP62306 86 aaKnown RBP19.54■□□□□ 0.72
VIM-209ENST00000544301 XKR9Q5GH70 373 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 NBPF12Q5TAG4 269 aaPredicted RBP19.54■□□□□ 0.72
VIM-209ENST00000544301 TRMT1LQ7Z2T5 733 aaKnown RBP19.54■□□□□ 0.72
VIM-209ENST00000544301 SAMD7Q7Z3H4 446 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 RASGEF1CQ8N431 466 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 CALR3Q96L12 384 aaKnown RBP19.54■□□□□ 0.72
VIM-209ENST00000544301 TAS2R14Q9NYV8 317 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 TCEAL9Q9UHQ7 104 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 HACL1Q9UJ83 578 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 NOC2LQ9Y3T9 749 aaKnown RBP19.54■□□□□ 0.72
VIM-209ENST00000544301 RIPK3Q9Y572 518 aa19.54■□□□□ 0.72
VIM-209ENST00000544301 NFKBIEO00221 500 aa19.53■□□□□ 0.72
VIM-209ENST00000544301 FDX1P10109 184 aa19.53■□□□□ 0.72
VIM-209ENST00000544301 ABCB4P21439 1286 aa19.53■□□□□ 0.72
VIM-209ENST00000544301 PPATQ06203 517 aa19.53■□□□□ 0.72
VIM-209ENST00000544301 FAM102BQ5T8I3 360 aa19.53■□□□□ 0.72
VIM-209ENST00000544301 PALB2Q86YC2 1186 aa19.53■□□□□ 0.72
VIM-209ENST00000544301 IWS1Q96ST2 819 aa19.53■□□□□ 0.72
VIM-209ENST00000544301 AGPAT1Q99943 283 aa19.53■□□□□ 0.72
VIM-209ENST00000544301 AMFRQ9UKV5 643 aa19.53■□□□□ 0.72
VIM-209ENST00000544301 HSF2BPO75031 334 aa19.52■□□□□ 0.72
VIM-209ENST00000544301 BAG6P46379 1132 aa19.52■□□□□ 0.72
VIM-209ENST00000544301 BAATQ14032 418 aaPredicted RBP19.52■□□□□ 0.72
VIM-209ENST00000544301 TRADDQ15628 312 aa19.52■□□□□ 0.72
VIM-209ENST00000544301 TBC1D10BQ4KMP7 808 aaPredicted RBP19.52■□□□□ 0.72
VIM-209ENST00000544301 LEKR1Q6ZMV7 388 aa19.52■□□□□ 0.72
VIM-209ENST00000544301 MICALL2Q8IY33 904 aa19.52■□□□□ 0.72
VIM-209ENST00000544301 VTI1AQ96AJ9 217 aa19.52■□□□□ 0.72
VIM-209ENST00000544301 ARHGEF26Q96DR7 871 aa19.52■□□□□ 0.72
VIM-209ENST00000544301 AP1M1Q9BXS5 423 aa19.52■□□□□ 0.72
VIM-209ENST00000544301 RNF146Q9NTX7 359 aa19.52■□□□□ 0.72
VIM-209ENST00000544301 SEPT11Q9NVA2 429 aaKnown RBP19.52■□□□□ 0.72
VIM-209ENST00000544301 OPA1O60313 960 aa19.52■□□□□ 0.72
VIM-209ENST00000544301 GMPSP49915 693 aaPredicted RBP19.52■□□□□ 0.72
VIM-209ENST00000544301 XRRA1Q6P2D8 792 aa19.52■□□□□ 0.72
VIM-209ENST00000544301 VSIG10LQ86VR7 867 aa19.52■□□□□ 0.72
VIM-209ENST00000544301 SLC17A8Q8NDX2 589 aa19.52■□□□□ 0.72
VIM-209ENST00000544301 SLC20A1Q8WUM9 679 aa19.52■□□□□ 0.72
VIM-209ENST00000544301 THAP2Q9H0W7 228 aa19.52■□□□□ 0.72
VIM-209ENST00000544301 PARP14Q460N5 1801 aa19.51■□□□□ 0.71
VIM-209ENST00000544301 ANKRD62A6NC57 917 aa19.51■□□□□ 0.71
VIM-209ENST00000544301 GOLGA6CA6NDK9 693 aa19.51■□□□□ 0.71
VIM-209ENST00000544301 GOLGA8KD6RF30 607 aa19.51■□□□□ 0.71
VIM-209ENST00000544301 RPS6KA5O75582 802 aa19.51■□□□□ 0.71
VIM-209ENST00000544301 CLSTN1O94985 981 aa19.51■□□□□ 0.71
VIM-209ENST00000544301 GOLGA6DP0CG33 693 aa19.51■□□□□ 0.71
VIM-209ENST00000544301 CCND2P30279 289 aa19.51■□□□□ 0.71
VIM-209ENST00000544301 BACE1P56817 501 aa19.51■□□□□ 0.71
VIM-209ENST00000544301 ANO5Q75V66 913 aa19.51■□□□□ 0.71
VIM-209ENST00000544301 FAM76AQ8TAV0 307 aa19.51■□□□□ 0.71
VIM-209ENST00000544301 MOV10L1Q9BXT6 1211 aaKnown RBP19.51■□□□□ 0.71
VIM-209ENST00000544301 GOLGA6AQ9NYA3 693 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms