RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 GDAP1L1Q96MZ0 367 aa17.75■□□□□ 0.43
COL4A1-204ENST00000543140 LRRC1Q9BTT6 524 aa17.75■□□□□ 0.43
COL4A1-204ENST00000543140 TBX20Q9UMR3 447 aa17.75■□□□□ 0.43
COL4A1-204ENST00000543140 MYH9P35579 1960 aaKnown RBP17.75■□□□□ 0.43
COL4A1-204ENST00000543140 ATP2A1O14983 1001 aa17.74■□□□□ 0.43
COL4A1-204ENST00000543140 MAFGO15525 162 aa17.74■□□□□ 0.43
COL4A1-204ENST00000543140 TUBBP07437 444 aa17.74■□□□□ 0.43
COL4A1-204ENST00000543140 LMNB1P20700 586 aa17.74■□□□□ 0.43
COL4A1-204ENST00000543140 OAS2P29728 719 aaKnown RBP17.74■□□□□ 0.43
COL4A1-204ENST00000543140 PAFAH1B1P43034 410 aa17.74■□□□□ 0.43
COL4A1-204ENST00000543140 SMTNP53814 917 aa17.74■□□□□ 0.43
COL4A1-204ENST00000543140 DMP1Q13316 513 aaPredicted RBP17.74■□□□□ 0.43
COL4A1-204ENST00000543140 C1orf220Q5T0J3 134 aa17.74■□□□□ 0.43
COL4A1-204ENST00000543140 MEI1Q5TIA1 1274 aa17.74■□□□□ 0.43
COL4A1-204ENST00000543140 OTUD6AQ7L8S5 288 aa17.74■□□□□ 0.43
COL4A1-204ENST00000543140 CCDC60Q8IWA6 550 aaPredicted RBP17.74■□□□□ 0.43
COL4A1-204ENST00000543140 LNX1Q8TBB1 728 aaPredicted RBP17.74■□□□□ 0.43
COL4A1-204ENST00000543140 SLC9A2Q9UBY0 812 aa17.74■□□□□ 0.43
COL4A1-204ENST00000543140 SEPT9Q9UHD8 586 aaPredicted RBP17.74■□□□□ 0.43
COL4A1-204ENST00000543140 DENND3A2RUS2 1198 aa17.74■□□□□ 0.43
COL4A1-204ENST00000543140 ADSSP30520 456 aa17.74■□□□□ 0.43
COL4A1-204ENST00000543140 ACTR2P61160 394 aa17.74■□□□□ 0.43
COL4A1-204ENST00000543140 SP2Q02086 613 aa17.74■□□□□ 0.43
COL4A1-204ENST00000543140 GABPB1Q06547 395 aaPredicted RBP17.74■□□□□ 0.43
COL4A1-204ENST00000543140 CBWD2Q8IUF1 395 aa17.74■□□□□ 0.43
COL4A1-204ENST00000543140 RDM1Q8NG50 284 aa17.74■□□□□ 0.43
COL4A1-204ENST00000543140 ATP6V0A1Q93050 837 aa17.74■□□□□ 0.43
COL4A1-204ENST00000543140 SENP7Q9BQF6 1050 aa17.74■□□□□ 0.43
COL4A1-204ENST00000543140 TIPINQ9BVW5 301 aa17.74■□□□□ 0.43
COL4A1-204ENST00000543140 UBE2TQ9NPD8 197 aaPredicted RBP17.74■□□□□ 0.43
COL4A1-204ENST00000543140 KMT5AQ9NQR1 393 aa17.74■□□□□ 0.43
COL4A1-204ENST00000543140 SNCAIPQ9Y6H5 919 aa17.74■□□□□ 0.43
COL4A1-204ENST00000543140 FOXN3O00409 490 aaPredicted RBP17.73■□□□□ 0.43
COL4A1-204ENST00000543140 STBD1O95210 358 aa17.73■□□□□ 0.43
COL4A1-204ENST00000543140 ADRB2P07550 413 aa17.73■□□□□ 0.43
COL4A1-204ENST00000543140 PSAPP07602 524 aa17.73■□□□□ 0.43
COL4A1-204ENST00000543140 H2AFZP0C0S5 128 aa17.73■□□□□ 0.43
COL4A1-204ENST00000543140 SLC7A5Q01650 507 aa17.73■□□□□ 0.43
COL4A1-204ENST00000543140 CASP8Q14790 479 aa17.73■□□□□ 0.43
COL4A1-204ENST00000543140 NOL9Q5SY16 702 aaKnown RBP17.73■□□□□ 0.43
COL4A1-204ENST00000543140 H2AFVQ71UI9 128 aa17.73■□□□□ 0.43
COL4A1-204ENST00000543140 ANKRD35Q8N283 1001 aa17.73■□□□□ 0.43
COL4A1-204ENST00000543140 CCDC127Q96BQ5 260 aa17.73■□□□□ 0.43
COL4A1-204ENST00000543140 UBXN6Q9BZV1 441 aa17.73■□□□□ 0.43
COL4A1-204ENST00000543140 ST6GALNAC4Q9H4F1 302 aa17.73■□□□□ 0.43
COL4A1-204ENST00000543140 RBM12Q9NTZ6 932 aaKnown RBP17.73■□□□□ 0.43
COL4A1-204ENST00000543140 SEPT11Q9NVA2 429 aaKnown RBP17.73■□□□□ 0.43
COL4A1-204ENST00000543140 TSKSQ9UJT2 592 aa17.73■□□□□ 0.43
COL4A1-204ENST00000543140 PPP2R3BQ9Y5P8 575 aa17.73■□□□□ 0.43
COL4A1-204ENST00000543140 LCTP09848 1927 aa17.73■□□□□ 0.43
COL4A1-204ENST00000543140 TARSL2A2RTX5 802 aaKnown RBP17.73■□□□□ 0.43
COL4A1-204ENST00000543140 ADM5C9JUS6 153 aa17.73■□□□□ 0.43
COL4A1-204ENST00000543140 MYBL2P10244 700 aa17.73■□□□□ 0.43
COL4A1-204ENST00000543140 PRKCEQ02156 737 aa17.73■□□□□ 0.43
COL4A1-204ENST00000543140 ARHGEF19Q8IW93 802 aa17.73■□□□□ 0.43
COL4A1-204ENST00000543140 C12orf56Q8IXR9 622 aa17.73■□□□□ 0.43
COL4A1-204ENST00000543140 MMGT1Q8N4V1 131 aa17.73■□□□□ 0.43
COL4A1-204ENST00000543140 PDE11AQ9HCR9 933 aa17.73■□□□□ 0.43
COL4A1-204ENST00000543140 NENFQ9UMX5 172 aa17.73■□□□□ 0.43
COL4A1-204ENST00000543140 PFASO15067 1338 aa17.73■□□□□ 0.43
COL4A1-204ENST00000543140 WDR90Q96KV7 1748 aa17.72■□□□□ 0.43
COL4A1-204ENST00000543140 CNGA1P29973 690 aa17.72■□□□□ 0.43
COL4A1-204ENST00000543140 TERF2Q15554 542 aa17.72■□□□□ 0.43
COL4A1-204ENST00000543140 CFAP221Q4G0U5 840 aa17.72■□□□□ 0.43
COL4A1-204ENST00000543140 CYFIP1Q7L576 1253 aa17.72■□□□□ 0.43
COL4A1-204ENST00000543140 ZNF572Q7Z3I7 529 aaPredicted RBP17.72■□□□□ 0.43
COL4A1-204ENST00000543140 OLIG1Q8TAK6 271 aa17.72■□□□□ 0.43
COL4A1-204ENST00000543140 POP1Q99575 1024 aaKnown RBP17.72■□□□□ 0.43
COL4A1-204ENST00000543140 DMGDHQ9UI17 866 aaKnown RBP17.72■□□□□ 0.43
COL4A1-204ENST00000543140 LRRIQ3A6PVS8 624 aaPredicted RBP17.72■□□□□ 0.43
COL4A1-204ENST00000543140 SPATA31C2B4DYI2 1134 aa17.72■□□□□ 0.43
COL4A1-204ENST00000543140 H3BQF6 201 aa17.72■□□□□ 0.43
COL4A1-204ENST00000543140 TNNT3P45378 269 aaPredicted RBP17.72■□□□□ 0.43
COL4A1-204ENST00000543140 GALCP54803 685 aa17.72■□□□□ 0.43
COL4A1-204ENST00000543140 SNRNP35Q16560 246 aaKnown RBP17.72■□□□□ 0.43
COL4A1-204ENST00000543140 GNPTABQ3T906 1256 aa17.72■□□□□ 0.43
COL4A1-204ENST00000543140 CCDC70Q6NSX1 233 aa17.72■□□□□ 0.43
COL4A1-204ENST00000543140 SEPT14Q6ZU15 432 aa17.72■□□□□ 0.43
COL4A1-204ENST00000543140 SLC30A5Q8TAD4 765 aa17.72■□□□□ 0.43
COL4A1-204ENST00000543140 ZNF526Q8TF50 670 aaPredicted RBP17.72■□□□□ 0.43
COL4A1-204ENST00000543140 IWS1Q96ST2 819 aa17.72■□□□□ 0.43
COL4A1-204ENST00000543140 ARID2Q68CP9 1835 aa17.72■□□□□ 0.43
COL4A1-204ENST00000543140 ADGRA3Q8IWK6 1321 aa17.72■□□□□ 0.43
COL4A1-204ENST00000543140 BTNL10A8MVZ5 291 aa17.71■□□□□ 0.43
COL4A1-204ENST00000543140 ABCB4P21439 1286 aa17.71■□□□□ 0.43
COL4A1-204ENST00000543140 MAP2K1Q02750 393 aaPredicted RBP17.71■□□□□ 0.43
COL4A1-204ENST00000543140 CETN1Q12798 172 aa17.71■□□□□ 0.43
COL4A1-204ENST00000543140 TMEM117Q9H0C3 514 aa17.71■□□□□ 0.43
COL4A1-204ENST00000543140 PLEKHA4Q9H4M7 779 aa17.71■□□□□ 0.43
COL4A1-204ENST00000543140 EXOC7Q9UPT5 735 aa17.71■□□□□ 0.43
COL4A1-204ENST00000543140 DICER1Q9UPY3 1922 aaKnown RBP17.71■□□□□ 0.43
COL4A1-204ENST00000543140 USP8P40818 1118 aa17.71■□□□□ 0.43
COL4A1-204ENST00000543140 DMTNQ08495 405 aa17.71■□□□□ 0.43
COL4A1-204ENST00000543140 MTERF2Q49AM1 385 aa17.71■□□□□ 0.43
COL4A1-204ENST00000543140 ABHD15Q6UXT9 468 aa17.71■□□□□ 0.43
COL4A1-204ENST00000543140 PALB2Q86YC2 1186 aa17.71■□□□□ 0.43
COL4A1-204ENST00000543140 KIFAP3Q92845 792 aa17.71■□□□□ 0.43
COL4A1-204ENST00000543140 KAT5Q92993 513 aa17.71■□□□□ 0.43
COL4A1-204ENST00000543140 CDHR1Q96JP9 859 aa17.71■□□□□ 0.43
COL4A1-204ENST00000543140 CYP26B1Q9NR63 512 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms