RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 EPSTI1Q96J88 318 aa13.75□□□□□ -0.21
VPS33A-207ENST00000542790 RAD9AQ99638 391 aa13.75□□□□□ -0.21
VPS33A-207ENST00000542790 ADAM2Q99965 735 aa13.75□□□□□ -0.21
VPS33A-207ENST00000542790 TIPINQ9BVW5 301 aa13.75□□□□□ -0.21
VPS33A-207ENST00000542790 GPRC5CQ9NQ84 441 aa13.75□□□□□ -0.21
VPS33A-207ENST00000542790 CHST12Q9NRB3 414 aa13.75□□□□□ -0.21
VPS33A-207ENST00000542790 RGS18Q9NS28 235 aa13.75□□□□□ -0.21
VPS33A-207ENST00000542790 C1orf112Q9NSG2 853 aa13.75□□□□□ -0.21
VPS33A-207ENST00000542790 KCND2Q9NZV8 630 aa13.75□□□□□ -0.21
VPS33A-207ENST00000542790 TMEM265A0A087WTH1 108 aa13.74□□□□□ -0.21
VPS33A-207ENST00000542790 RBAK-RBAKDNI3L0D1 243 aa13.74□□□□□ -0.21
VPS33A-207ENST00000542790 CUTAO60888 179 aa13.74□□□□□ -0.21
VPS33A-207ENST00000542790 CSDE1O75534 798 aaKnown RBP13.74□□□□□ -0.21
VPS33A-207ENST00000542790 GLRA2P23416 452 aa13.74□□□□□ -0.21
VPS33A-207ENST00000542790 PBX2P40425 430 aa13.74□□□□□ -0.21
VPS33A-207ENST00000542790 PTENP60484 403 aa13.74□□□□□ -0.21
VPS33A-207ENST00000542790 KRT85P78386 507 aa13.74□□□□□ -0.21
VPS33A-207ENST00000542790 CAPSQ13938 189 aa13.74□□□□□ -0.21
VPS33A-207ENST00000542790 PPP2R5AQ15172 486 aa13.74□□□□□ -0.21
VPS33A-207ENST00000542790 RINT1Q6NUQ1 792 aa13.74□□□□□ -0.21
VPS33A-207ENST00000542790 C1orf186Q6ZWK4 172 aa13.74□□□□□ -0.21
VPS33A-207ENST00000542790 SLC24A5Q71RS6 500 aa13.74□□□□□ -0.21
VPS33A-207ENST00000542790 CATSPER4Q7RTX7 472 aa13.74□□□□□ -0.21
VPS33A-207ENST00000542790 TMCO2Q7Z6W1 182 aaPredicted RBP13.74□□□□□ -0.21
VPS33A-207ENST00000542790 RTN4RL1Q86UN2 441 aaPredicted RBP13.74□□□□□ -0.21
VPS33A-207ENST00000542790 LINC01599Q8WXQ3 324 aa13.74□□□□□ -0.21
VPS33A-207ENST00000542790 NFKBIZQ9BYH8 718 aa13.74□□□□□ -0.21
VPS33A-207ENST00000542790 SLC28A3Q9HAS3 691 aa13.74□□□□□ -0.21
VPS33A-207ENST00000542790 RCOR1Q9UKL0 485 aa13.74□□□□□ -0.21
VPS33A-207ENST00000542790 INSL6Q9Y581 213 aa13.74□□□□□ -0.21
VPS33A-207ENST00000542790 TANC1Q9C0D5 1861 aa13.74□□□□□ -0.21
VPS33A-207ENST00000542790 RANBP2P49792 3224 aaKnown RBP13.73□□□□□ -0.21
VPS33A-207ENST00000542790 MGEA5O60502 916 aa13.73□□□□□ -0.21
VPS33A-207ENST00000542790 UPP2O95045 317 aa13.73□□□□□ -0.21
VPS33A-207ENST00000542790 STAG3L1P0CL83 205 aa13.73□□□□□ -0.21
VPS33A-207ENST00000542790 PLCG1P19174 1290 aa13.73□□□□□ -0.21
VPS33A-207ENST00000542790 NCLP19338 710 aaKnown RBP13.73□□□□□ -0.21
VPS33A-207ENST00000542790 FGFR4P22455 802 aa13.73□□□□□ -0.21
VPS33A-207ENST00000542790 GUCY2CP25092 1073 aa13.73□□□□□ -0.21
VPS33A-207ENST00000542790 DDIT3P35638 169 aa13.73□□□□□ -0.21
VPS33A-207ENST00000542790 ME1P48163 572 aa13.73□□□□□ -0.21
VPS33A-207ENST00000542790 SLC12A3P55017 1021 aa13.73□□□□□ -0.21
VPS33A-207ENST00000542790 NCBP1Q09161 790 aaKnown RBP13.73□□□□□ -0.21
VPS33A-207ENST00000542790 DSC3Q14574 896 aa13.73□□□□□ -0.21
VPS33A-207ENST00000542790 ZNF697Q5TEC3 545 aa13.73□□□□□ -0.21
VPS33A-207ENST00000542790 RRAGBQ5VZM2 374 aa13.73□□□□□ -0.21
VPS33A-207ENST00000542790 FAM117BQ6P1L5 589 aa13.73□□□□□ -0.21
VPS33A-207ENST00000542790 CCDC73Q6ZRK6 1079 aa13.73□□□□□ -0.21
VPS33A-207ENST00000542790 USP49Q70CQ1 688 aa13.73□□□□□ -0.21
VPS33A-207ENST00000542790 IFT74Q96LB3 600 aa13.73□□□□□ -0.21
VPS33A-207ENST00000542790 DRC1Q96MC2 740 aa13.73□□□□□ -0.21
VPS33A-207ENST00000542790 DACT1Q9NYF0 836 aa13.73□□□□□ -0.21
VPS33A-207ENST00000542790 KCNG1Q9UIX4 513 aa13.73□□□□□ -0.21
VPS33A-207ENST00000542790 YBX2Q9Y2T7 364 aaKnown RBP13.73□□□□□ -0.21
VPS33A-207ENST00000542790 LRRIQ4A6NIV6 560 aa13.72□□□□□ -0.21
VPS33A-207ENST00000542790 C9IYK1 514 aa13.72□□□□□ -0.21
VPS33A-207ENST00000542790 INO80B-WBP1J3KQ70 363 aa13.72□□□□□ -0.21
VPS33A-207ENST00000542790 ERLIN2O94905 339 aa13.72□□□□□ -0.21
VPS33A-207ENST00000542790 MYOGP15173 224 aa13.72□□□□□ -0.21
VPS33A-207ENST00000542790 NAMPTP43490 491 aa13.72□□□□□ -0.21
VPS33A-207ENST00000542790 SARSP49591 514 aaKnown RBP13.72□□□□□ -0.21
VPS33A-207ENST00000542790 FAM189BP81408 668 aa13.72□□□□□ -0.21
VPS33A-207ENST00000542790 HTRA4P83105 476 aaPredicted RBP13.72□□□□□ -0.21
VPS33A-207ENST00000542790 NPAS4Q8IUM7 802 aa13.72□□□□□ -0.21
VPS33A-207ENST00000542790 ZBTB8OSQ8IWT0 167 aa13.72□□□□□ -0.21
VPS33A-207ENST00000542790 RAD54LQ92698 747 aa13.72□□□□□ -0.21
VPS33A-207ENST00000542790 YME1L1Q96TA2 773 aa13.72□□□□□ -0.21
VPS33A-207ENST00000542790 RUSC1Q9BVN2 902 aa13.72□□□□□ -0.21
VPS33A-207ENST00000542790 C2orf40Q9H1Z8 148 aa13.72□□□□□ -0.21
VPS33A-207ENST00000542790 NKX2-4Q9H2Z4 354 aa13.72□□□□□ -0.21
VPS33A-207ENST00000542790 MINDY3Q9H8M7 445 aa13.72□□□□□ -0.21
VPS33A-207ENST00000542790 C17orf75Q9HAS0 396 aa13.72□□□□□ -0.21
VPS33A-207ENST00000542790 BLOC1S4Q9NUP1 217 aa13.72□□□□□ -0.21
VPS33A-207ENST00000542790 STK17AQ9UEE5 414 aa13.72□□□□□ -0.21
VPS33A-207ENST00000542790 LRFN2Q9ULH4 789 aa13.72□□□□□ -0.21
VPS33A-207ENST00000542790 PCDHB7Q9Y5E2 793 aa13.72□□□□□ -0.21
VPS33A-207ENST00000542790 TRIOBPQ9H2D6 2365 aa13.72□□□□□ -0.21
VPS33A-207ENST00000542790 TRIP12Q14669 1992 aaPredicted RBP13.71□□□□□ -0.21
VPS33A-207ENST00000542790 HIP1RO75146 1068 aa13.71□□□□□ -0.21
VPS33A-207ENST00000542790 CA3P07451 260 aa13.71□□□□□ -0.21
VPS33A-207ENST00000542790 MBTD1Q05BQ5 628 aa13.71□□□□□ -0.21
VPS33A-207ENST00000542790 DHX8Q14562 1220 aaKnown RBP13.71□□□□□ -0.21
VPS33A-207ENST00000542790 AXDND1Q5T1B0 1012 aaPredicted RBP13.71□□□□□ -0.21
VPS33A-207ENST00000542790 PPP2R2DQ66LE6 453 aa13.71□□□□□ -0.21
VPS33A-207ENST00000542790 CRIPAKQ8N1N5 446 aa13.71□□□□□ -0.21
VPS33A-207ENST00000542790 DEFB123Q8N688 67 aa13.71□□□□□ -0.21
VPS33A-207ENST00000542790 DEPTORQ8TB45 409 aa13.71□□□□□ -0.21
VPS33A-207ENST00000542790 LARP4BQ92615 738 aaKnown RBP13.71□□□□□ -0.21
VPS33A-207ENST00000542790 SPATA32Q96LK8 384 aa13.71□□□□□ -0.21
VPS33A-207ENST00000542790 TRAIPQ9BWF2 469 aa13.71□□□□□ -0.21
VPS33A-207ENST00000542790 SCAND2PQ9GZW5 306 aaPredicted RBP13.71□□□□□ -0.21
VPS33A-207ENST00000542790 SEMA6BQ9H3T3 888 aa13.71□□□□□ -0.21
VPS33A-207ENST00000542790 ZNF576Q9H609 170 aa13.71□□□□□ -0.21
VPS33A-207ENST00000542790 ELAC1Q9H777 363 aaKnown RBP13.71□□□□□ -0.21
VPS33A-207ENST00000542790 POLD4Q9HCU8 107 aa13.71□□□□□ -0.21
VPS33A-207ENST00000542790 AGPAT5Q9NUQ2 364 aa13.71□□□□□ -0.21
VPS33A-207ENST00000542790 TMEM161AQ9NX61 479 aa13.71□□□□□ -0.21
VPS33A-207ENST00000542790 PCDHA7Q9UN72 937 aa13.71□□□□□ -0.21
VPS33A-207ENST00000542790 PIN4Q9Y237 131 aaKnown RBP13.71□□□□□ -0.21
VPS33A-207ENST00000542790 MYH9P35579 1960 aaKnown RBP13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms