RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 GPNMBQ14956 572 aa18.89■□□□□ 0.61
LIG1-204ENST00000542460 TSHZ1Q6ZSZ6 1077 aa18.89■□□□□ 0.61
LIG1-204ENST00000542460 SFR1Q86XK3 245 aa18.89■□□□□ 0.61
LIG1-204ENST00000542460 FAM178BQ8IXR5 827 aa18.89■□□□□ 0.61
LIG1-204ENST00000542460 BADQ92934 168 aa18.89■□□□□ 0.61
LIG1-204ENST00000542460 CCDC47Q96A33 483 aaKnown RBP18.89■□□□□ 0.61
LIG1-204ENST00000542460 NOC2LQ9Y3T9 749 aaKnown RBP18.89■□□□□ 0.61
LIG1-204ENST00000542460 CEP290O15078 2479 aa18.89■□□□□ 0.61
LIG1-204ENST00000542460 SLC16A4O15374 487 aa18.88■□□□□ 0.61
LIG1-204ENST00000542460 KLRC4O43908 158 aa18.88■□□□□ 0.61
LIG1-204ENST00000542460 CSDE1O75534 798 aaKnown RBP18.88■□□□□ 0.61
LIG1-204ENST00000542460 CXCL10P02778 98 aa18.88■□□□□ 0.61
LIG1-204ENST00000542460 CSF2RAP15509 400 aa18.88■□□□□ 0.61
LIG1-204ENST00000542460 SFPQP23246 707 aaKnown RBP eCLIP18.88■□□□□ 0.61
LIG1-204ENST00000542460 NCKAP1LP55160 1127 aa18.88■□□□□ 0.61
LIG1-204ENST00000542460 PCBP1Q15365 356 aaKnown RBP eCLIP18.88■□□□□ 0.61
LIG1-204ENST00000542460 CAMK4Q16566 473 aa18.88■□□□□ 0.61
LIG1-204ENST00000542460 FIZ1Q96SL8 496 aa18.88■□□□□ 0.61
LIG1-204ENST00000542460 LBHD1Q9BQE6 289 aaPredicted RBP18.88■□□□□ 0.61
LIG1-204ENST00000542460 KIFC3Q9BVG8 833 aa18.88■□□□□ 0.61
LIG1-204ENST00000542460 OSBPL7Q9BZF2 842 aa18.88■□□□□ 0.61
LIG1-204ENST00000542460 CLSTN2Q9H4D0 955 aa18.88■□□□□ 0.61
LIG1-204ENST00000542460 MINDY3Q9H8M7 445 aa18.88■□□□□ 0.61
LIG1-204ENST00000542460 ARHGAP28Q9P2N2 729 aa18.88■□□□□ 0.61
LIG1-204ENST00000542460 PHLPP2Q6ZVD8 1323 aa18.87■□□□□ 0.61
LIG1-204ENST00000542460 ADGRA3Q8IWK6 1321 aa18.87■□□□□ 0.61
LIG1-204ENST00000542460 INO80B-WBP1J3KQ70 363 aa18.87■□□□□ 0.61
LIG1-204ENST00000542460 GPR182O15218 404 aa18.87■□□□□ 0.61
LIG1-204ENST00000542460 ABCD1P33897 745 aa18.87■□□□□ 0.61
LIG1-204ENST00000542460 MBTD1Q05BQ5 628 aa18.87■□□□□ 0.61
LIG1-204ENST00000542460 EHHADHQ08426 723 aa18.87■□□□□ 0.61
LIG1-204ENST00000542460 KMT5BQ4FZB7 885 aa18.87■□□□□ 0.61
LIG1-204ENST00000542460 HABP4Q5JVS0 413 aaKnown RBP18.87■□□□□ 0.61
LIG1-204ENST00000542460 ZNF720Q7Z2F6 126 aa18.87■□□□□ 0.61
LIG1-204ENST00000542460 HAUS6Q7Z4H7 955 aa18.87■□□□□ 0.61
LIG1-204ENST00000542460 RPUSD2Q8IZ73 545 aaKnown RBP18.87■□□□□ 0.61
LIG1-204ENST00000542460 TMEM161BQ8NDZ6 487 aa18.87■□□□□ 0.61
LIG1-204ENST00000542460 GSDMAQ96QA5 445 aa18.87■□□□□ 0.61
LIG1-204ENST00000542460 NUP62CLQ9H1M0 184 aa18.87■□□□□ 0.61
LIG1-204ENST00000542460 TMEM134Q9H6X4 195 aa18.87■□□□□ 0.61
LIG1-204ENST00000542460 AGO3Q9H9G7 860 aaKnown RBP18.87■□□□□ 0.61
LIG1-204ENST00000542460 MRPL44Q9H9J2 332 aaKnown RBP18.87■□□□□ 0.61
LIG1-204ENST00000542460 EXOC1Q9NV70 894 aa18.87■□□□□ 0.61
LIG1-204ENST00000542460 K7ENM7 598 aa18.86■□□□□ 0.61
LIG1-204ENST00000542460 K7ERI5 159 aa18.86■□□□□ 0.61
LIG1-204ENST00000542460 NMT1P30419 496 aaKnown RBP18.86■□□□□ 0.61
LIG1-204ENST00000542460 CD52P31358 61 aa18.86■□□□□ 0.61
LIG1-204ENST00000542460 FPGSQ05932 587 aa18.86■□□□□ 0.61
LIG1-204ENST00000542460 PAK2Q13177 524 aa18.86■□□□□ 0.61
LIG1-204ENST00000542460 PSMD2Q13200 908 aa18.86■□□□□ 0.61
LIG1-204ENST00000542460 KCNB1Q14721 858 aa18.86■□□□□ 0.61
LIG1-204ENST00000542460 MAPK6Q16659 721 aa18.86■□□□□ 0.61
LIG1-204ENST00000542460 FAM43BQ6ZT52 329 aaPredicted RBP18.86■□□□□ 0.61
LIG1-204ENST00000542460 DEFB128Q7Z7B8 93 aa18.86■□□□□ 0.61
LIG1-204ENST00000542460 FAM228AQ86W67 206 aa18.86■□□□□ 0.61
LIG1-204ENST00000542460 SPATA20Q8TB22 786 aa18.86■□□□□ 0.61
LIG1-204ENST00000542460 KCNN1Q92952 543 aa18.86■□□□□ 0.61
LIG1-204ENST00000542460 SMARCE1Q969G3 411 aa18.86■□□□□ 0.61
LIG1-204ENST00000542460 IFIH1Q9BYX4 1025 aaKnown RBP18.86■□□□□ 0.61
LIG1-204ENST00000542460 FZD8Q9H461 694 aa18.86■□□□□ 0.61
LIG1-204ENST00000542460 ST6GALNAC4Q9H4F1 302 aa18.86■□□□□ 0.61
LIG1-204ENST00000542460 PRMT7Q9NVM4 692 aaPredicted RBP18.86■□□□□ 0.61
LIG1-204ENST00000542460 TBC1D7Q9P0N9 293 aa18.86■□□□□ 0.61
LIG1-204ENST00000542460 PADI3Q9ULW8 664 aa18.86■□□□□ 0.61
LIG1-204ENST00000542460 ST3GAL5Q9UNP4 418 aa18.86■□□□□ 0.61
LIG1-204ENST00000542460 PCDHA5Q9Y5H7 936 aa18.86■□□□□ 0.61
LIG1-204ENST00000542460 DENND3A2RUS2 1198 aa18.85■□□□□ 0.61
LIG1-204ENST00000542460 PFKMP08237 780 aa18.85■□□□□ 0.61
LIG1-204ENST00000542460 NFX1Q12986 1120 aaKnown RBP18.85■□□□□ 0.61
LIG1-204ENST00000542460 PPIGQ13427 754 aaKnown RBP eCLIP18.85■□□□□ 0.612e-7■■■□□ 17.9
LIG1-204ENST00000542460 PLEKHG4Q58EX7 1191 aa18.85■□□□□ 0.61
LIG1-204ENST00000542460 FAM26FQ5R3K3 315 aa18.85■□□□□ 0.61
LIG1-204ENST00000542460 CATSPER4Q7RTX7 472 aa18.85■□□□□ 0.61
LIG1-204ENST00000542460 SEPT8Q92599 483 aa18.85■□□□□ 0.61
LIG1-204ENST00000542460 ERCC4Q92889 916 aaPredicted RBP18.85■□□□□ 0.61
LIG1-204ENST00000542460 PRIMPOLQ96LW4 560 aa18.85■□□□□ 0.61
LIG1-204ENST00000542460 CCDC113Q9H0I3 377 aa18.85■□□□□ 0.61
LIG1-204ENST00000542460 IL23AQ9NPF7 189 aa18.85■□□□□ 0.61
LIG1-204ENST00000542460 RMND1Q9NWS8 449 aa18.85■□□□□ 0.61
LIG1-204ENST00000542460 COLQQ9Y215 455 aaPredicted RBP18.85■□□□□ 0.61
LIG1-204ENST00000542460 ERLIN2O94905 339 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 RHOBTB3O94955 611 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 FGFR4P22455 802 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 SARSP49591 514 aaKnown RBP18.84■□□□□ 0.61
LIG1-204ENST00000542460 GTF2BQ00403 316 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 NCBP1Q09161 790 aaKnown RBP18.84■□□□□ 0.61
LIG1-204ENST00000542460 ALCAMQ13740 583 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 NFKBIBQ15653 356 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 FAM187BQ17R55 369 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 NT5DC1Q5TFE4 455 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 STXBP4Q6ZWJ1 553 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 DBF4BQ8NFT6 615 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 APBB2Q92870 758 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 HPS3Q969F9 1004 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 ERVK-5Q9HDB9 667 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 PCDH10Q9P2E7 1040 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 PCDHB13Q9Y5F0 798 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 ACKR2O00590 384 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 GCNT3O95395 438 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 PRKCBP05771 671 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms