RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 FAM228AQ86W67 206 aa9.76□□□□□ -0.85
CLSTN3-212ENST00000541770 LRRC43Q8N309 656 aa9.76□□□□□ -0.85
CLSTN3-212ENST00000541770 METTL13Q8N6R0 699 aa9.76□□□□□ -0.85
CLSTN3-212ENST00000541770 CASD1Q96PB1 797 aa9.76□□□□□ -0.85
CLSTN3-212ENST00000541770 TMEM117Q9H0C3 514 aa9.76□□□□□ -0.85
CLSTN3-212ENST00000541770 FOXD4L1Q9NU39 408 aa9.76□□□□□ -0.85
CLSTN3-212ENST00000541770 SPG21Q9NZD8 308 aa9.76□□□□□ -0.85
CLSTN3-212ENST00000541770 DENND4AQ7Z401 1863 aa9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 IPO5O00410 1097 aaKnown RBP9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 TBX3O15119 743 aa9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 HOXA2O43364 376 aa9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 STX6O43752 255 aa9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 CCNT1O60563 726 aaKnown RBP9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 CLASP2O75122 1294 aaKnown RBP9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 TDP2O95551 362 aa9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 CXCL14O95715 111 aa9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 CRYBB1P53674 252 aaPredicted RBP9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 ITGB3BPQ13352 177 aaPredicted RBP9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 ATAT1Q5SQI0 421 aa9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 MCTP1Q6DN14 999 aa9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 PDXDC2PQ6P474 469 aa9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 BRAPQ7Z569 592 aa9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 KIAA0319LQ8IZA0 1049 aa9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 ETNPPLQ8TBG4 499 aa9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 ZNF668Q96K58 619 aaPredicted RBP9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 FAM20AQ96MK3 541 aa9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 RIT2Q99578 217 aa9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 ZNF577Q9BSK1 485 aa9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 ELAC1Q9H777 363 aaKnown RBP9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 KCNMB3Q9NPA1 279 aa9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 ZNF302Q9NR11 478 aa9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 TBC1D22BQ9NU19 505 aa9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 DDX25Q9UHL0 483 aaKnown RBP9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 FBXL21Q9UKT6 434 aa9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 NOL7Q9UMY1 257 aaKnown RBP9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 ZDBF2Q9HCK1 2354 aa9.75□□□□□ -0.85
CLSTN3-212ENST00000541770 WDR81Q562E7 1941 aa9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 VPS37CA5D8V6 355 aaPredicted RBP9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 C2orf71A6NGG8 1288 aa9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 MSH4O15457 936 aa9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 DHX15O43143 795 aaKnown RBP9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 PI15O43692 258 aa9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 SLC37A4O43826 429 aa9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 RFX1P22670 979 aa9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 SLC26A2P50443 739 aa9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 CLCN5P51795 746 aa9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 RILPL1Q5EBL4 403 aa9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 ZNF484Q5JVG2 852 aa9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 SWSAP1Q6NVH7 229 aa9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 ZDHHC14Q8IZN3 488 aa9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 PLCD3Q8N3E9 789 aa9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 MRPL43Q8N983 215 aaKnown RBP9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 HELQQ8TDG4 1101 aa9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 AUTS2Q8WXX7 1259 aa9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 SLC5A5Q92911 643 aa9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 TMEM169Q96HH4 297 aa9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 SCLT1Q96NL6 688 aa9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 HINFPQ9BQA5 517 aa9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 ZSCAN16Q9H4T2 348 aaPredicted RBP9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 TCEAL9Q9UHQ7 104 aa9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 MTMR6Q9Y217 621 aa9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 AKT3Q9Y243 479 aa9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 COL1A2P08123 1366 aa9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 C2orf16Q68DN1 1984 aa9.74□□□□□ -0.85
CLSTN3-212ENST00000541770 CFAP54Q96N23 3096 aa9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 WNT7AO00755 349 aa9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 NEMFO60524 1076 aa9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 PSMD10O75832 226 aa9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 ATG7O95352 703 aa9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 EOMESO95936 686 aa9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 CCNE2O96020 404 aa9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 EPCAMP16422 314 aa9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 ALDH7A1P49419 539 aaKnown RBP9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 TOB1P50616 345 aaPredicted RBP9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 CLCN3P51790 818 aa9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 NLRP11P59045 1033 aaKnown RBP9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 FAM189BP81408 668 aa9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 DSC3Q14574 896 aa9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 ANGPT1Q15389 498 aa9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 TTC38Q5R3I4 469 aa9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 CWF19L1Q69YN2 538 aaKnown RBP9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 KIAA1841Q6NSI8 718 aa9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 ZNF746Q6NUN9 644 aaPredicted RBP9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 MIS18BP1Q6P0N0 1132 aa9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 B3GNT9Q6UX72 402 aa9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 TMC5Q6UXY8 1006 aa9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 ECHDC2Q86YB7 292 aa9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 CCDC60Q8IWA6 550 aaPredicted RBP9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 SLFN12Q8IYM2 578 aa9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 VPS52Q8N1B4 723 aa9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 SLC39A11Q8N1S5 342 aa9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 HAS1Q92839 578 aa9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 ACSF2Q96CM8 615 aaPredicted RBP9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 CYP26B1Q9NR63 512 aa9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 RNF19AQ9NV58 838 aa9.73□□□□□ -0.85
CLSTN3-212ENST00000541770 GAS7O60861 476 aa9.72□□□□□ -0.85
CLSTN3-212ENST00000541770 ZC3H11AO75152 810 aaKnown RBP eCLIP9.72□□□□□ -0.852e-6■■■■■ 37.4
CLSTN3-212ENST00000541770 GPR32O75388 356 aa9.72□□□□□ -0.85
CLSTN3-212ENST00000541770 BAG4O95429 457 aaKnown RBP9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms