RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 GJA3Q9Y6H8 435 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 ZHX2Q9Y6X8 837 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 ASTN2O75129 1339 aaPredicted RBP14.65□□□□□ -0.06
PTPN1-202ENST00000541713 LAMB1P07942 1786 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 FERP16591 822 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 IFI16Q16666 785 aaKnown RBP14.65□□□□□ -0.06
PTPN1-202ENST00000541713 COBLL1Q53SF7 1204 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 NAP1L4Q99733 375 aaKnown RBP14.65□□□□□ -0.06
PTPN1-202ENST00000541713 GRIN2DO15399 1336 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 PSMD10O75832 226 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 MMEP08473 750 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 DR1Q01658 176 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 Q4G0T1 1027 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 DCAF12L1Q5VU92 463 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 ALS2CLQ60I27 953 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 TATDN1Q6P1N9 297 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 DLK2Q6UY11 383 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 PPP4R3CPQ6ZMV5 832 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 EEPD1Q7L9B9 569 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 DAW1Q8N136 415 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 MKL1Q969V6 931 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 ATP6V1G3Q96LB4 118 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 GLT8D2Q9H1C3 349 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 TBK1Q9UHD2 729 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 CYP3A7-CYP3A51PA0A087WV96 503 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 ACSL3O95573 720 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 CYP3A7P24462 503 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 BFSP1Q12934 665 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 EPM2AIP1Q7L775 607 aaPredicted RBP14.64□□□□□ -0.07
PTPN1-202ENST00000541713 LRRC57Q8N9N7 239 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 FBXO25Q8TCJ0 367 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 WNK4Q96J92 1243 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 CEP89Q96ST8 783 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 EDEM3Q9BZQ6 932 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 APEX2Q9UBZ4 518 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 DBR1Q9UK59 544 aaKnown RBP14.64□□□□□ -0.07
PTPN1-202ENST00000541713 ZMYM2Q9UBW7 1377 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 MNAT1P51948 309 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 HAUS6Q7Z4H7 955 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 CPLX4Q7Z7G2 160 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 LMBR1Q8WVP7 490 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 CNOT8Q9UFF9 292 aaKnown RBP14.64□□□□□ -0.07
PTPN1-202ENST00000541713 COMTP21964 271 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 GUCY2CP25092 1073 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 VAMP7P51809 220 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 ZNF394Q53GI3 561 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 SLC27A3Q5K4L6 730 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 CCDC50Q8IVM0 306 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 CCDC26Q8TAB7 109 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 CHURC1Q8WUH1 139 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 CCT8L2Q96SF2 557 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 DAAM1Q9Y4D1 1078 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 CD2APQ9Y5K6 639 aa14.64□□□□□ -0.07
PTPN1-202ENST00000541713 ANKRD63C9JTQ0 380 aa14.63□□□□□ -0.07
PTPN1-202ENST00000541713 ZNF844Q08AG5 666 aa14.63□□□□□ -0.07
PTPN1-202ENST00000541713 CPA5Q8WXQ8 436 aa14.63□□□□□ -0.07
PTPN1-202ENST00000541713 SYN2Q92777 582 aaPredicted RBP14.63□□□□□ -0.07
PTPN1-202ENST00000541713 ZNF653Q96CK0 615 aa14.63□□□□□ -0.07
PTPN1-202ENST00000541713 LARSQ9P2J5 1176 aaKnown RBP14.63□□□□□ -0.07
PTPN1-202ENST00000541713 MRPL11Q9Y3B7 192 aaKnown RBP14.63□□□□□ -0.07
PTPN1-202ENST00000541713 CAND2O75155 1236 aa14.63□□□□□ -0.07
PTPN1-202ENST00000541713 MXI1P50539 228 aa14.63□□□□□ -0.07
PTPN1-202ENST00000541713 MTMR1Q13613 665 aa14.63□□□□□ -0.07
PTPN1-202ENST00000541713 SPOPLQ6IQ16 392 aa14.63□□□□□ -0.07
PTPN1-202ENST00000541713 PLEKHO2Q8TD55 490 aa14.63□□□□□ -0.07
PTPN1-202ENST00000541713 TATDN2Q93075 761 aa14.63□□□□□ -0.07
PTPN1-202ENST00000541713 ACSF2Q96CM8 615 aaPredicted RBP14.63□□□□□ -0.07
PTPN1-202ENST00000541713 FMO2Q99518 471 aa14.63□□□□□ -0.07
PTPN1-202ENST00000541713 HSPBP1Q9NZL4 362 aa14.63□□□□□ -0.07
PTPN1-202ENST00000541713 GOLGA6L7A0A1B0GV03 622 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 FRMD3A2A2Y4 597 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 PIAS1O75925 651 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 CORO7P57737 925 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 ITGB3BPQ13352 177 aaPredicted RBP14.62□□□□□ -0.07
PTPN1-202ENST00000541713 BIRC3Q13489 604 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 TNIP1Q15025 636 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 QPCTQ16769 361 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 SEPT14Q6ZU15 432 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 ANKRD42Q8N9B4 389 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 POMGNT1Q8WZA1 660 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 KAT2BQ92831 832 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 CCDC114Q96M63 670 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 PCDHB18PQ96TA0 734 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 AGPAT1Q99943 283 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 IDI2Q9BXS1 227 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 STK33Q9BYT3 514 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 SUGT1Q9Y2Z0 365 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 BZW2Q9Y6E2 419 aaKnown RBP14.62□□□□□ -0.07
PTPN1-202ENST00000541713 PLIN4Q96Q06 1357 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 CLDN3O15551 220 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 SPP2Q13103 211 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 PPP1R7Q15435 360 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 SAMD7Q7Z3H4 446 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 GMCL1Q96IK5 515 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 PPP1R37O75864 691 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 MAGEA9P43362 315 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 RPS6P62753 249 aaKnown RBP14.62□□□□□ -0.07
PTPN1-202ENST00000541713 IFI35P80217 286 aaPredicted RBP14.62□□□□□ -0.07
PTPN1-202ENST00000541713 SEMA3FQ13275 785 aa14.62□□□□□ -0.07
PTPN1-202ENST00000541713 KAZNQ674X7 775 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms