RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 DNM3Q9UQ16 869 aa14.54□□□□□ -0.08
LTBR-208ENST00000541005 PRUNE2Q8WUY3 3088 aa14.54□□□□□ -0.08
LTBR-208ENST00000541005 H3BNC9 293 aa14.53□□□□□ -0.08
LTBR-208ENST00000541005 GTPBP6O43824 516 aaPredicted RBP14.53□□□□□ -0.08
LTBR-208ENST00000541005 ZNF623O75123 536 aa14.53□□□□□ -0.08
LTBR-208ENST00000541005 SKIP12755 728 aa14.53□□□□□ -0.08
LTBR-208ENST00000541005 IGFBP4P22692 258 aa14.53□□□□□ -0.08
LTBR-208ENST00000541005 AXLP30530 894 aa14.53□□□□□ -0.08
LTBR-208ENST00000541005 HOXA11P31270 313 aaPredicted RBP14.53□□□□□ -0.08
LTBR-208ENST00000541005 BMPR1AP36894 532 aa14.53□□□□□ -0.08
LTBR-208ENST00000541005 GATMP50440 423 aa14.53□□□□□ -0.08
LTBR-208ENST00000541005 AMHR2Q16671 573 aa14.53□□□□□ -0.08
LTBR-208ENST00000541005 FAM102BQ5T8I3 360 aa14.53□□□□□ -0.08
LTBR-208ENST00000541005 TWF2Q6IBS0 349 aaKnown RBP14.53□□□□□ -0.08
LTBR-208ENST00000541005 KCNK18Q7Z418 384 aa14.53□□□□□ -0.08
LTBR-208ENST00000541005 KIFAP3Q92845 792 aa14.53□□□□□ -0.08
LTBR-208ENST00000541005 CCDC51Q96ER9 411 aa14.53□□□□□ -0.08
LTBR-208ENST00000541005 TMEM117Q9H0C3 514 aa14.53□□□□□ -0.08
LTBR-208ENST00000541005 FAM105AQ9NUU6 356 aa14.53□□□□□ -0.08
LTBR-208ENST00000541005 CLIC4Q9Y696 253 aa14.53□□□□□ -0.08
LTBR-208ENST00000541005 PDCD11Q14690 1871 aaKnown RBP14.52□□□□□ -0.08
LTBR-208ENST00000541005 E9PMD0 336 aa14.52□□□□□ -0.09
LTBR-208ENST00000541005 TSPAN1O60635 241 aa14.52□□□□□ -0.09
LTBR-208ENST00000541005 ERLIN2O94905 339 aa14.52□□□□□ -0.09
LTBR-208ENST00000541005 HSP90AA1P07900 732 aaKnown RBP14.52□□□□□ -0.09
LTBR-208ENST00000541005 FGFR1P11362 822 aa14.52□□□□□ -0.09
LTBR-208ENST00000541005 CTNNB1P35222 781 aa14.52□□□□□ -0.09
LTBR-208ENST00000541005 NAMPTP43490 491 aa14.52□□□□□ -0.09
LTBR-208ENST00000541005 GRIN1Q05586 938 aa14.52□□□□□ -0.09
LTBR-208ENST00000541005 PPP2R5AQ15172 486 aa14.52□□□□□ -0.09
LTBR-208ENST00000541005 FAM187BQ17R55 369 aa14.52□□□□□ -0.09
LTBR-208ENST00000541005 PAN2Q504Q3 1202 aaKnown RBP14.52□□□□□ -0.09
LTBR-208ENST00000541005 NAALADL2Q58DX5 795 aa14.52□□□□□ -0.09
LTBR-208ENST00000541005 CLLU1OSQ5K130 101 aa14.52□□□□□ -0.09
LTBR-208ENST00000541005 FAM173BQ6P4H8 233 aa14.52□□□□□ -0.09
LTBR-208ENST00000541005 PPP4R3CPQ6ZMV5 832 aa14.52□□□□□ -0.09
LTBR-208ENST00000541005 BSNDQ8WZ55 320 aa14.52□□□□□ -0.09
LTBR-208ENST00000541005 P2RX5Q93086 422 aa14.52□□□□□ -0.09
LTBR-208ENST00000541005 PRIMPOLQ96LW4 560 aa14.52□□□□□ -0.09
LTBR-208ENST00000541005 C11orf84Q9BUA3 381 aaPredicted RBP14.52□□□□□ -0.09
LTBR-208ENST00000541005 TIPINQ9BVW5 301 aa14.52□□□□□ -0.09
LTBR-208ENST00000541005 KCND2Q9NZV8 630 aa14.52□□□□□ -0.09
LTBR-208ENST00000541005 REV3LO60673 3130 aa14.51□□□□□ -0.09
LTBR-208ENST00000541005 LRRIQ4A6NIV6 560 aa14.51□□□□□ -0.09
LTBR-208ENST00000541005 TBKBP1A7MCY6 615 aa14.51□□□□□ -0.09
LTBR-208ENST00000541005 INO80B-WBP1J3KQ70 363 aa14.51□□□□□ -0.09
LTBR-208ENST00000541005 GUCY2CP25092 1073 aa14.51□□□□□ -0.09
LTBR-208ENST00000541005 NASPP49321 788 aaPredicted RBP14.51□□□□□ -0.09
LTBR-208ENST00000541005 GPM6BQ13491 265 aa14.51□□□□□ -0.09
LTBR-208ENST00000541005 UBXN11Q5T124 520 aa14.51□□□□□ -0.09
LTBR-208ENST00000541005 RINT1Q6NUQ1 792 aa14.51□□□□□ -0.09
LTBR-208ENST00000541005 NOTUMQ6P988 496 aa14.51□□□□□ -0.09
LTBR-208ENST00000541005 C1orf186Q6ZWK4 172 aa14.51□□□□□ -0.09
LTBR-208ENST00000541005 MAEAQ7L5Y9 396 aa14.51□□□□□ -0.09
LTBR-208ENST00000541005 CABP7Q86V35 215 aa14.51□□□□□ -0.09
LTBR-208ENST00000541005 LRRC43Q8N309 656 aa14.51□□□□□ -0.09
LTBR-208ENST00000541005 MRPL38Q96DV4 380 aaKnown RBP14.51□□□□□ -0.09
LTBR-208ENST00000541005 CASD1Q96PB1 797 aa14.51□□□□□ -0.09
LTBR-208ENST00000541005 USP28Q96RU2 1077 aa14.51□□□□□ -0.09
LTBR-208ENST00000541005 RUSC1Q9BVN2 902 aa14.51□□□□□ -0.09
LTBR-208ENST00000541005 CCSER1Q9C0I3 900 aa14.51□□□□□ -0.09
LTBR-208ENST00000541005 LMAN2LQ9H0V9 348 aa14.51□□□□□ -0.09
LTBR-208ENST00000541005 C2orf40Q9H1Z8 148 aa14.51□□□□□ -0.09
LTBR-208ENST00000541005 FBXO2Q9UK22 296 aaPredicted RBP14.51□□□□□ -0.09
LTBR-208ENST00000541005 PCDHB2Q9Y5E7 798 aa14.51□□□□□ -0.09
LTBR-208ENST00000541005 SRPRBQ9Y5M8 271 aaKnown RBP14.51□□□□□ -0.09
LTBR-208ENST00000541005 CUL9Q8IWT3 2517 aa14.51□□□□□ -0.09
LTBR-208ENST00000541005 CNTNAP2Q9UHC6 1331 aa14.5□□□□□ -0.09
LTBR-208ENST00000541005 ZSCAN22P10073 491 aaPredicted RBP14.5□□□□□ -0.09
LTBR-208ENST00000541005 ARF4P18085 180 aaPredicted RBP14.5□□□□□ -0.09
LTBR-208ENST00000541005 IBSPP21815 317 aaPredicted RBP14.5□□□□□ -0.09
LTBR-208ENST00000541005 UBA7P41226 1012 aa14.5□□□□□ -0.09
LTBR-208ENST00000541005 SLC12A3P55017 1021 aa14.5□□□□□ -0.09
LTBR-208ENST00000541005 MAPK7Q13164 816 aa14.5□□□□□ -0.09
LTBR-208ENST00000541005 SLC39A14Q15043 492 aa14.5□□□□□ -0.09
LTBR-208ENST00000541005 PTPROQ16827 1216 aa14.5□□□□□ -0.09
LTBR-208ENST00000541005 MRPL10Q7Z7H8 261 aaKnown RBP14.5□□□□□ -0.09
LTBR-208ENST00000541005 ZBTB8OSQ8IWT0 167 aa14.5□□□□□ -0.09
LTBR-208ENST00000541005 ABI1Q8IZP0 508 aa14.5□□□□□ -0.09
LTBR-208ENST00000541005 DAW1Q8N136 415 aa14.5□□□□□ -0.09
LTBR-208ENST00000541005 SYT2Q8N9I0 419 aaPredicted RBP14.5□□□□□ -0.09
LTBR-208ENST00000541005 CALML4Q96GE6 196 aa14.5□□□□□ -0.09
LTBR-208ENST00000541005 CDK5RAP3Q96JB5 506 aa14.5□□□□□ -0.09
LTBR-208ENST00000541005 MRPL9Q9BYD2 267 aaKnown RBP14.5□□□□□ -0.09
LTBR-208ENST00000541005 CCDC113Q9H0I3 377 aa14.5□□□□□ -0.09
LTBR-208ENST00000541005 FZD8Q9H461 694 aa14.5□□□□□ -0.09
LTBR-208ENST00000541005 CWH43Q9H720 699 aa14.5□□□□□ -0.09
LTBR-208ENST00000541005 C17orf75Q9HAS0 396 aa14.5□□□□□ -0.09
LTBR-208ENST00000541005 PRMT7Q9NVM4 692 aaPredicted RBP14.5□□□□□ -0.09
LTBR-208ENST00000541005 DAXXQ9UER7 740 aaPredicted RBP14.5□□□□□ -0.09
LTBR-208ENST00000541005 TTC28Q96AY4 2481 aa14.5□□□□□ -0.09
LTBR-208ENST00000541005 ZMYM2Q9UBW7 1377 aa14.49□□□□□ -0.09
LTBR-208ENST00000541005 LAG3P18627 525 aa14.49□□□□□ -0.09
LTBR-208ENST00000541005 NCBP1Q09161 790 aaKnown RBP14.49□□□□□ -0.09
LTBR-208ENST00000541005 ZRSR1Q15695 479 aaKnown RBP14.49□□□□□ -0.09
LTBR-208ENST00000541005 CSPP1Q1MSJ5 1256 aa14.49□□□□□ -0.09
LTBR-208ENST00000541005 TIGD5Q53EQ6 642 aa14.49□□□□□ -0.09
LTBR-208ENST00000541005 LRRC55Q6ZSA7 311 aa14.49□□□□□ -0.09
LTBR-208ENST00000541005 CNNM3Q8NE01 707 aa14.49□□□□□ -0.09
LTBR-208ENST00000541005 LRRC15Q8TF66 581 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms