RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 RECQLP46063 649 aaPredicted RBP15.11■□□□□ 0.01
USP3-204ENST00000540797 DRAP1Q14919 205 aaPredicted RBP15.11■□□□□ 0.01
USP3-204ENST00000540797 STAP1Q9ULZ2 295 aa15.11■□□□□ 0.01
USP3-204ENST00000540797 CCDC160A6NGH7 325 aa15.11■□□□□ 0.01
USP3-204ENST00000540797 KIAA0391O15091 583 aaKnown RBP15.11■□□□□ 0.01
USP3-204ENST00000540797 SDC4P31431 198 aa15.11■□□□□ 0.01
USP3-204ENST00000540797 C2orf54Q08AI8 447 aa15.11■□□□□ 0.01
USP3-204ENST00000540797 XRRA1Q6P2D8 792 aa15.11■□□□□ 0.01
USP3-204ENST00000540797 FBXL13Q8NEE6 735 aa15.11■□□□□ 0.01
USP3-204ENST00000540797 COL5A2P05997 1499 aaPredicted RBP15.11■□□□□ 0.01
USP3-204ENST00000540797 PRKCEQ02156 737 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 RAB44Q7Z6P3 723 aaPredicted RBP15.1■□□□□ 0.01
USP3-204ENST00000540797 NDUFAF2Q8N183 169 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 MCUQ8NE86 351 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 PRPF31Q8WWY3 499 aaKnown RBP15.1■□□□□ 0.01
USP3-204ENST00000540797 RABGGTAQ92696 567 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 PGBD4Q96DM1 585 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 MOV10L1Q9BXT6 1211 aaKnown RBP15.1■□□□□ 0.01
USP3-204ENST00000540797 TNS2Q63HR2 1409 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 POLRMTO00411 1230 aaKnown RBP15.1■□□□□ 0.01
USP3-204ENST00000540797 PDXKO00764 312 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 FOXN1O15353 648 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 EMC2Q15006 297 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 GNASQ5JWF2 1037 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 ENOSF1Q7L5Y1 443 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 CNTNAP5Q8WYK1 1306 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 TJP3O95049 919 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 TXNRD3Q86VQ6 643 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 ACER1Q8TDN7 264 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 LBHD1Q9BQE6 289 aaPredicted RBP15.1■□□□□ 0.01
USP3-204ENST00000540797 BCL2L12Q9HB09 334 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 LCMT1Q9UIC8 334 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 TRAPPC3O43617 180 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 RFC5P40937 340 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 RPS6P62753 249 aaKnown RBP15.1■□□□□ 0.01
USP3-204ENST00000540797 KCNB1Q14721 858 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 VEPH1Q14D04 833 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 TAAR1Q96RJ0 339 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 RIT2Q99578 217 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 GBA2Q9HCG7 927 aaPredicted RBP15.1■□□□□ 0.01
USP3-204ENST00000540797 FBXO28Q9NVF7 368 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 MSH2P43246 934 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 PSMC1P62191 440 aaKnown RBP15.1■□□□□ 0.01
USP3-204ENST00000540797 DGKDQ16760 1214 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 NBPF9Q3BBW0 867 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 LMBRD2Q68DH5 695 aaPredicted RBP15.1■□□□□ 0.01
USP3-204ENST00000540797 BPIFA3Q9BQP9 254 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 TRIM9Q9C026 710 aa15.1■□□□□ 0.01
USP3-204ENST00000540797 APBA1Q02410 837 aa15.09■□□□□ 0.01
USP3-204ENST00000540797 MYLK4Q86YV6 388 aaPredicted RBP15.09■□□□□ 0.01
USP3-204ENST00000540797 RBM41Q96IZ5 413 aaKnown RBP15.09■□□□□ 0.01
USP3-204ENST00000540797 ICAM1P05362 532 aa15.09■□□□□ 0.01
USP3-204ENST00000540797 TMEM62Q0P6H9 643 aa15.09■□□□□ 0.01
USP3-204ENST00000540797 TFDP2Q14188 446 aa15.09■□□□□ 0.01
USP3-204ENST00000540797 SKIV2LQ15477 1246 aaKnown RBP15.09■□□□□ 0.01
USP3-204ENST00000540797 ATP6V1E2Q96A05 226 aa15.09■□□□□ 0.01
USP3-204ENST00000540797 AP1M1Q9BXS5 423 aa15.09■□□□□ 0.01
USP3-204ENST00000540797 ZMYND12Q9H0C1 365 aa15.09■□□□□ 0.01
USP3-204ENST00000540797 ABHD10Q9NUJ1 306 aa15.09■□□□□ 0.01
USP3-204ENST00000540797 ERAP1Q9NZ08 941 aa15.09■□□□□ 0.01
USP3-204ENST00000540797 KLHL14Q9P2G3 628 aa15.09■□□□□ 0.01
USP3-204ENST00000540797 ATP8A1Q9Y2Q0 1164 aa15.09■□□□□ 0.01
USP3-204ENST00000540797 ATP1A2P50993 1020 aa15.09■□□□□ 0.01
USP3-204ENST00000540797 FRMD5Q7Z6J6 570 aa15.09■□□□□ 0.01
USP3-204ENST00000540797 KSR1Q8IVT5 923 aa15.09■□□□□ 0.01
USP3-204ENST00000540797 CFAP57Q96MR6 1250 aa15.09■□□□□ 0.01
USP3-204ENST00000540797 RPS6KA5O75582 802 aa15.09■□□□□ 0.01
USP3-204ENST00000540797 ZRANB2O95218 330 aaKnown RBP eCLIP15.09■□□□□ 0.01
USP3-204ENST00000540797 VEGFAP15692 232 aaPredicted RBP15.09■□□□□ 0.01
USP3-204ENST00000540797 COG7P83436 770 aa15.09■□□□□ 0.01
USP3-204ENST00000540797 BBS9Q3SYG4 887 aa15.09■□□□□ 0.01
USP3-204ENST00000540797 DCLK2Q8N568 766 aa15.09■□□□□ 0.01
USP3-204ENST00000540797 TNIP3Q96KP6 325 aa15.09■□□□□ 0.01
USP3-204ENST00000540797 HPCAL4Q9UM19 191 aa15.09■□□□□ 0.01
USP3-204ENST00000540797 BCL9O00512 1426 aa15.09■□□□□ 0.01
USP3-204ENST00000540797 ASAP2O43150 1006 aa15.08■□□□□ 0.01
USP3-204ENST00000540797 CYP2C9P11712 490 aa15.08■□□□□ 0.01
USP3-204ENST00000540797 PLS3P13797 630 aa15.08■□□□□ 0.01
USP3-204ENST00000540797 BACE1P56817 501 aa15.08■□□□□ 0.01
USP3-204ENST00000540797 LAMC2Q13753 1193 aa15.08■□□□□ 0.01
USP3-204ENST00000540797 PLA2G4FQ68DD2 849 aa15.08■□□□□ 0.01
USP3-204ENST00000540797 KAZALD1Q96I82 304 aa15.08■□□□□ 0.01
USP3-204ENST00000540797 REEP2Q9BRK0 252 aa15.08■□□□□ 0.01
USP3-204ENST00000540797 MAD2L2Q9UI95 211 aa15.08■□□□□ 0.01
USP3-204ENST00000540797 TLK1Q9UKI8 766 aa15.08■□□□□ 0.01
USP3-204ENST00000540797 ZMYND10O75800 440 aa15.08■□□□□ 0
USP3-204ENST00000540797 RGS2P41220 211 aa15.08■□□□□ 0
USP3-204ENST00000540797 CPT1AP50416 773 aa15.08■□□□□ 0
USP3-204ENST00000540797 DR1Q01658 176 aa15.08■□□□□ 0
USP3-204ENST00000540797 SARM1Q6SZW1 724 aa15.08■□□□□ 0
USP3-204ENST00000540797 KCNH7Q9NS40 1196 aa15.08■□□□□ 0
USP3-204ENST00000540797 HSPBP1Q9NZL4 362 aa15.08■□□□□ 0
USP3-204ENST00000540797 KCND2Q9NZV8 630 aa15.08■□□□□ 0
USP3-204ENST00000540797 DDNO94850 711 aaPredicted RBP15.08■□□□□ 0
USP3-204ENST00000540797 FGFR2P21802 821 aa15.08■□□□□ 0
USP3-204ENST00000540797 RTFDC1Q9BY42 306 aaPredicted RBP15.08■□□□□ 0
USP3-204ENST00000540797 MIF4GDA9UHW6 222 aaKnown RBP15.08■□□□□ 0
USP3-204ENST00000540797 SLC26A4O43511 780 aa15.08■□□□□ 0
USP3-204ENST00000540797 HBP1O60381 514 aa15.08■□□□□ 0
USP3-204ENST00000540797 FGGP02679 453 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms