RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 SH2D4AQ9H788 454 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 KRT82Q9NSB4 513 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.16□□□□□ -0.78
CLIP1-214ENST00000540539 CHPF2Q9P2E5 772 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 LIMA1Q9UHB6 759 aaKnown RBP10.16□□□□□ -0.78
CLIP1-214ENST00000540539 HBS1LQ9Y450 684 aaKnown RBP10.16□□□□□ -0.78
CLIP1-214ENST00000540539 TTLL13PA6NNM8 815 aa10.15□□□□□ -0.78
CLIP1-214ENST00000540539 RASA4BC9J798 803 aa10.15□□□□□ -0.78
CLIP1-214ENST00000540539 SPECC1L-ADORA2AF8WAN1 911 aa10.15□□□□□ -0.78
CLIP1-214ENST00000540539 ZNF263O14978 683 aa10.15□□□□□ -0.78
CLIP1-214ENST00000540539 RASA4O43374 803 aa10.15□□□□□ -0.78
CLIP1-214ENST00000540539 VPS41P49754 854 aa10.15□□□□□ -0.78
CLIP1-214ENST00000540539 AP1B1Q10567 949 aa10.15□□□□□ -0.78
CLIP1-214ENST00000540539 MAMSTRQ6ZN01 415 aa10.15□□□□□ -0.78
CLIP1-214ENST00000540539 CLASRPQ8N2M8 674 aaKnown RBP10.15□□□□□ -0.78
CLIP1-214ENST00000540539 NSMCE3Q96MG7 304 aa10.15□□□□□ -0.78
CLIP1-214ENST00000540539 PHF12Q96QT6 1004 aa10.15□□□□□ -0.78
CLIP1-214ENST00000540539 LBHD1Q9BQE6 289 aaPredicted RBP10.15□□□□□ -0.78
CLIP1-214ENST00000540539 HGH1Q9BTY7 390 aa10.15□□□□□ -0.78
CLIP1-214ENST00000540539 TANGO6Q9C0B7 1094 aa10.15□□□□□ -0.78
CLIP1-214ENST00000540539 CLK4Q9HAZ1 481 aaKnown RBP10.15□□□□□ -0.78
CLIP1-214ENST00000540539 USP29Q9HBJ7 922 aa10.15□□□□□ -0.78
CLIP1-214ENST00000540539 PRKAG3Q9UGI9 489 aa10.15□□□□□ -0.78
CLIP1-214ENST00000540539 DOLKQ9UPQ8 538 aa10.15□□□□□ -0.78
CLIP1-214ENST00000540539 CAPN9O14815 690 aa10.15□□□□□ -0.79
CLIP1-214ENST00000540539 MAP3K7O43318 606 aa10.15□□□□□ -0.79
CLIP1-214ENST00000540539 CBFA2T3O75081 653 aa10.15□□□□□ -0.79
CLIP1-214ENST00000540539 COBLO75128 1261 aa10.15□□□□□ -0.79
CLIP1-214ENST00000540539 KRT36O76013 467 aa10.15□□□□□ -0.79
CLIP1-214ENST00000540539 ZFYP08048 801 aaPredicted RBP10.15□□□□□ -0.79
CLIP1-214ENST00000540539 ITGA9Q13797 1035 aa10.15□□□□□ -0.79
CLIP1-214ENST00000540539 TTF1Q15361 905 aaPredicted RBP10.15□□□□□ -0.79
CLIP1-214ENST00000540539 TTC39AQ5SRH9 613 aa10.15□□□□□ -0.79
CLIP1-214ENST00000540539 STOX1Q6ZVD7 989 aa10.15□□□□□ -0.79
CLIP1-214ENST00000540539 VASH1Q7L8A9 365 aaPredicted RBP10.15□□□□□ -0.79
CLIP1-214ENST00000540539 STK11IPQ8N1F8 1099 aa10.15□□□□□ -0.79
CLIP1-214ENST00000540539 ARHGAP24Q8N264 748 aa10.15□□□□□ -0.79
CLIP1-214ENST00000540539 ESX1Q8N693 406 aa10.15□□□□□ -0.79
CLIP1-214ENST00000540539 RIN3Q8TB24 985 aa10.15□□□□□ -0.79
CLIP1-214ENST00000540539 USP44Q9H0E7 712 aa10.15□□□□□ -0.79
CLIP1-214ENST00000540539 NHEJ1Q9H9Q4 299 aaPredicted RBP10.15□□□□□ -0.79
CLIP1-214ENST00000540539 SELENONQ9NZV5 590 aa10.15□□□□□ -0.79
CLIP1-214ENST00000540539 DBF4Q9UBU7 674 aaPredicted RBP10.15□□□□□ -0.79
CLIP1-214ENST00000540539 SERTAD1Q9UHV2 236 aa10.15□□□□□ -0.79
CLIP1-214ENST00000540539 STX8Q9UNK0 236 aa10.15□□□□□ -0.79
CLIP1-214ENST00000540539 TJP1Q07157 1748 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 TNFRSF10AO00220 468 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 VILLO15195 856 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 TEX28O15482 410 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 SLC26A4O43511 780 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 RNASEH1O60930 286 aaKnown RBP10.14□□□□□ -0.79
CLIP1-214ENST00000540539 ZPR1O75312 459 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 TBX10O75333 385 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 ANXA1P04083 346 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 CYP21A2P08686 494 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 UBTFL1P0CB47 393 aaPredicted RBP10.14□□□□□ -0.79
CLIP1-214ENST00000540539 UBL4AP11441 157 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 BDNFP23560 247 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 TARSP26639 723 aaKnown RBP10.14□□□□□ -0.79
CLIP1-214ENST00000540539 PDIA3P30101 505 aaKnown RBP10.14□□□□□ -0.79
CLIP1-214ENST00000540539 SLC34A1Q06495 639 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 CUL1Q13616 776 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 CYTH1Q15438 398 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 CTC1Q2NKJ3 1217 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 FAM117BQ6P1L5 589 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 KRT26Q7Z3Y9 468 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 TMC3Q7Z5M5 1100 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 CATIPQ7Z7H3 387 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 SMYD4Q8IYR2 804 aaPredicted RBP10.14□□□□□ -0.79
CLIP1-214ENST00000540539 MYO1HQ8N1T3 1032 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 SPATA20Q8TB22 786 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 DGCR14Q96DF8 476 aaKnown RBP10.14□□□□□ -0.79
CLIP1-214ENST00000540539 EPB41L1Q9H4G0 881 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 COL15A1P39059 1388 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 LY75O60449 1722 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 TTC34A8MYJ7 566 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 TCP11X1B4DZS4 312 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 SH2B2O14492 632 aaPredicted RBP10.14□□□□□ -0.79
CLIP1-214ENST00000540539 POLR2DO15514 142 aaKnown RBP10.14□□□□□ -0.79
CLIP1-214ENST00000540539 MTRF1O75570 445 aaKnown RBP10.14□□□□□ -0.79
CLIP1-214ENST00000540539 STARD3NLO95772 234 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 ZBED1O96006 694 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 LDHCP07864 332 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 MZF1P28698 734 aaPredicted RBP10.14□□□□□ -0.79
CLIP1-214ENST00000540539 TRIM29Q14134 588 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 E2F2Q14209 437 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 HLFQ16534 295 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 WASHC4Q2M389 1173 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 PROSER3Q2NL68 480 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 KCTD21Q4G0X4 260 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 ECHDC2Q86YB7 292 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 MRGBPQ9NV56 204 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 HAO1Q9UJM8 370 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 ANGEL1Q9UNK9 670 aaKnown RBP10.14□□□□□ -0.79
CLIP1-214ENST00000540539 RPL26L1Q9UNX3 145 aaKnown RBP10.14□□□□□ -0.79
CLIP1-214ENST00000540539 ATP6V0A2Q9Y487 856 aa10.14□□□□□ -0.79
CLIP1-214ENST00000540539 LAMA4Q16363 1823 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 ZNF831Q5JPB2 1677 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 TBKBP1A7MCY6 615 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 BBOX1O75936 387 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms