RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 PPM1KQ8N3J5 372 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 KBTBD3Q8NAB2 608 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 RXFP1Q9HBX9 757 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 RRN3Q9NYV6 651 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 KDM3AQ9Y4C1 1321 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 ADCY9O60503 1353 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 hCG_1642624A0A1W2PR95 340 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 SNTNA6NMZ2 147 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 KLHL41O60662 606 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 FKBP6O75344 327 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 HSPA1AP0DMV8 641 aaKnown RBP9.29□□□□□ -0.92
YBX3-208ENST00000540447 HSPA1BP0DMV9 641 aaKnown RBP9.29□□□□□ -0.92
YBX3-208ENST00000540447 JAK1P23458 1154 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 ALDH5A1P51649 535 aaPredicted RBP9.29□□□□□ -0.92
YBX3-208ENST00000540447 FAM26FQ5R3K3 315 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 PRPF39Q86UA1 669 aaKnown RBP9.29□□□□□ -0.92
YBX3-208ENST00000540447 SCUBE1Q8IWY4 988 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 OR8H2Q8N162 312 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 ACAP3Q96P50 834 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 CEP44Q9C0F1 390 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 DISC1Q9NRI5 854 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 GOLGA8JA6NMD2 632 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 TEX33O43247 280 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 MBD4O95243 580 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 ADD1P35611 737 aaKnown RBP9.29□□□□□ -0.92
YBX3-208ENST00000540447 ATXN3P54252 364 aaPredicted RBP9.29□□□□□ -0.92
YBX3-208ENST00000540447 TXNDC2Q86VQ3 553 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 APPBP2Q92624 585 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 MS4A14Q96JA4 679 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 TMBIM4Q9HC24 238 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 A1CFQ9NQ94 594 aaKnown RBP9.29□□□□□ -0.92
YBX3-208ENST00000540447 APPL1Q9UKG1 709 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 HPS5Q9UPZ3 1129 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 TRIM17Q9Y577 477 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 ARHGEF37A1IGU5 675 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 GPAA1O43292 621 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 ENO3P13929 434 aaPredicted RBP9.29□□□□□ -0.92
YBX3-208ENST00000540447 CCDC142Q17RM4 750 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 KRT24Q2M2I5 525 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 TBC1D9BQ66K14 1250 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 SDE2Q6IQ49 451 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 PLEKHM3Q6ZWE6 761 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 SNF8Q96H20 258 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 PHACTR1Q9C0D0 580 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 SCN3BQ9NY72 215 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 ABLIM1O14639 778 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 PLCG2P16885 1265 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 CCNE1P24864 410 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 PTPN4P29074 926 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 DMC1Q14565 340 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 RHOT2Q8IXI1 618 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 LINS1Q8NG48 757 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 PAGE5Q96GU1 130 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 ZNF184Q99676 751 aaPredicted RBP9.29□□□□□ -0.92
YBX3-208ENST00000540447 REXO4Q9GZR2 422 aaKnown RBP9.29□□□□□ -0.92
YBX3-208ENST00000540447 SPATA2Q9UM82 520 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 ITM2BQ9Y287 266 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 COL4A3BPQ9Y5P4 624 aa9.29□□□□□ -0.92
YBX3-208ENST00000540447 CCDC130P13994 396 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 ANO4Q32M45 955 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 TNNI3KQ59H18 835 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 MARK2Q7KZI7 788 aaKnown RBP9.28□□□□□ -0.92
YBX3-208ENST00000540447 VTI1AQ96AJ9 217 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 CSRNP1Q96S65 589 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 ZWILCHQ9H900 591 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 RBM12Q9NTZ6 932 aaKnown RBP9.28□□□□□ -0.92
YBX3-208ENST00000540447 FPGT-TNNI3KV9GXZ4 949 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 ASAP2O43150 1006 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 PGM3O95394 542 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 HLA-DOAP06340 250 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 KRT20P35900 424 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 TECP42680 631 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 GALK1P51570 392 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 CASP5P51878 434 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 NEK10Q6ZWH5 1172 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 PEX5LQ8IYB4 626 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 FMR1NBQ8N0W7 255 aaPredicted RBP9.28□□□□□ -0.92
YBX3-208ENST00000540447 PRCCQ92733 491 aaPredicted RBP9.28□□□□□ -0.92
YBX3-208ENST00000540447 ROPN1BQ9BZX4 212 aaPredicted RBP9.28□□□□□ -0.92
YBX3-208ENST00000540447 ROPN1Q9HAT0 212 aaPredicted RBP9.28□□□□□ -0.92
YBX3-208ENST00000540447 METTL5Q9NRN9 209 aaKnown RBP9.28□□□□□ -0.92
YBX3-208ENST00000540447 ZNF446Q9NWS9 450 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 SPEF1Q9Y4P9 236 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 A0A0D9SFI3 127 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 CDH16O75309 829 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 HSD17B3P37058 310 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 DYNLT1P63172 113 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 MYL7Q01449 175 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 NR1D2Q14995 579 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 SGSM1Q2NKQ1 1148 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 TJAP1Q5JTD0 557 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 DARS2Q6PI48 645 aaKnown RBP9.28□□□□□ -0.92
YBX3-208ENST00000540447 STX19Q8N4C7 294 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 DPF2Q92785 391 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 TMA16Q96EY4 203 aaKnown RBP9.28□□□□□ -0.92
YBX3-208ENST00000540447 ANKRD36BP1Q96IX9 119 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 HMG20AQ9NP66 347 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 IARS2Q9NSE4 1012 aaKnown RBP9.28□□□□□ -0.92
YBX3-208ENST00000540447 MPP6Q9NZW5 540 aa9.28□□□□□ -0.92
YBX3-208ENST00000540447 STK17AQ9UEE5 414 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms