RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 DEFB129Q9H1M3 183 aa18.35■□□□□ 0.53
USP28-208ENST00000540438 FRMPD4Q14CM0 1322 aa18.34■□□□□ 0.53
USP28-208ENST00000540438 PHF20L1A8MW92 1017 aa18.34■□□□□ 0.53
USP28-208ENST00000540438 GAP43P17677 238 aa18.34■□□□□ 0.53
USP28-208ENST00000540438 PTGER2P43116 358 aa18.34■□□□□ 0.53
USP28-208ENST00000540438 JAM2P57087 298 aa18.34■□□□□ 0.53
USP28-208ENST00000540438 UBAP2Q5T6F2 1119 aaKnown RBP18.34■□□□□ 0.53
USP28-208ENST00000540438 SYN2Q92777 582 aaPredicted RBP18.34■□□□□ 0.53
USP28-208ENST00000540438 FAM118BQ9BPY3 351 aa18.34■□□□□ 0.53
USP28-208ENST00000540438 AGO4Q9HCK5 861 aaKnown RBP18.34■□□□□ 0.53
USP28-208ENST00000540438 ERVK-5Q9HDB9 667 aa18.34■□□□□ 0.53
USP28-208ENST00000540438 HSPBP1Q9NZL4 362 aa18.34■□□□□ 0.53
USP28-208ENST00000540438 CTTNBP2NLQ9P2B4 639 aa18.34■□□□□ 0.53
USP28-208ENST00000540438 HACL1Q9UJ83 578 aa18.34■□□□□ 0.53
USP28-208ENST00000540438 KRT13P13646 458 aa18.34■□□□□ 0.53
USP28-208ENST00000540438 NF2P35240 595 aa18.34■□□□□ 0.53
USP28-208ENST00000540438 FKBP1AP62942 108 aaKnown RBP18.34■□□□□ 0.53
USP28-208ENST00000540438 RNF207Q6ZRF8 634 aa18.34■□□□□ 0.53
USP28-208ENST00000540438 ZC3H3Q8IXZ2 948 aaKnown RBP18.34■□□□□ 0.53
USP28-208ENST00000540438 RTKN2Q8IZC4 609 aa18.34■□□□□ 0.53
USP28-208ENST00000540438 LRRC57Q8N9N7 239 aa18.34■□□□□ 0.53
USP28-208ENST00000540438 SEMA4DQ92854 862 aa18.34■□□□□ 0.53
USP28-208ENST00000540438 IQCDQ96DY2 449 aa18.34■□□□□ 0.53
USP28-208ENST00000540438 FTLP02792 175 aaPredicted RBP18.33■□□□□ 0.53
USP28-208ENST00000540438 QARSP47897 775 aaKnown RBP18.33■□□□□ 0.53
USP28-208ENST00000540438 SWSAP1Q6NVH7 229 aa18.33■□□□□ 0.53
USP28-208ENST00000540438 VPS36Q86VN1 386 aa18.33■□□□□ 0.53
USP28-208ENST00000540438 RPUSD2Q8IZ73 545 aaKnown RBP18.33■□□□□ 0.53
USP28-208ENST00000540438 FAM76AQ8TAV0 307 aa18.33■□□□□ 0.53
USP28-208ENST00000540438 GABBR1Q9UBS5 961 aa18.33■□□□□ 0.53
USP28-208ENST00000540438 APEX2Q9UBZ4 518 aa18.33■□□□□ 0.53
USP28-208ENST00000540438 RGS17Q9UGC6 210 aaPredicted RBP18.33■□□□□ 0.53
USP28-208ENST00000540438 GMPSP49915 693 aaPredicted RBP18.33■□□□□ 0.52
USP28-208ENST00000540438 VAMP7P51809 220 aa18.33■□□□□ 0.52
USP28-208ENST00000540438 GUCY1A3Q02108 690 aa18.33■□□□□ 0.52
USP28-208ENST00000540438 PGM5Q15124 567 aa18.33■□□□□ 0.52
USP28-208ENST00000540438 CTNNBL1Q8WYA6 563 aaPredicted RBP18.33■□□□□ 0.52
USP28-208ENST00000540438 WRNIP1Q96S55 665 aa18.33■□□□□ 0.52
USP28-208ENST00000540438 LARSQ9P2J5 1176 aaKnown RBP18.33■□□□□ 0.52
USP28-208ENST00000540438 HSF2BPO75031 334 aa18.33■□□□□ 0.52
USP28-208ENST00000540438 P4HBP07237 508 aaKnown RBP18.33■□□□□ 0.52
USP28-208ENST00000540438 BMT2Q1RMZ1 405 aa18.33■□□□□ 0.52
USP28-208ENST00000540438 CFAP58Q5T655 872 aa18.33■□□□□ 0.52
USP28-208ENST00000540438 DCAF12L1Q5VU92 463 aa18.33■□□□□ 0.52
USP28-208ENST00000540438 SNRNP48Q6IEG0 339 aaKnown RBP18.33■□□□□ 0.52
USP28-208ENST00000540438 IFT20Q8IY31 132 aa18.33■□□□□ 0.52
USP28-208ENST00000540438 CNKSR2Q8WXI2 1034 aa18.33■□□□□ 0.52
USP28-208ENST00000540438 ALG3Q92685 438 aa18.33■□□□□ 0.52
USP28-208ENST00000540438 TRIM7Q9C029 511 aa18.33■□□□□ 0.52
USP28-208ENST00000540438 PTPN22Q9Y2R2 807 aa18.33■□□□□ 0.52
USP28-208ENST00000540438 ZNF233A6NK53 670 aa18.32■□□□□ 0.52
USP28-208ENST00000540438 GNGT1P63211 74 aa18.32■□□□□ 0.52
USP28-208ENST00000540438 CEP85LQ5SZL2 805 aa18.32■□□□□ 0.52
USP28-208ENST00000540438 TMEM130Q8N3G9 435 aa18.32■□□□□ 0.52
USP28-208ENST00000540438 OLIG1Q8TAK6 271 aa18.32■□□□□ 0.52
USP28-208ENST00000540438 UBLCP1Q8WVY7 318 aaPredicted RBP18.32■□□□□ 0.52
USP28-208ENST00000540438 CEP170P1Q96L14 293 aa18.32■□□□□ 0.52
USP28-208ENST00000540438 RNF146Q9NTX7 359 aa18.32■□□□□ 0.52
USP28-208ENST00000540438 CALCOCO1Q9P1Z2 691 aa18.32■□□□□ 0.52
USP28-208ENST00000540438 TCRBV7S2A1N4TA0A589 114 aa18.32■□□□□ 0.52
USP28-208ENST00000540438 ADSSP30520 456 aa18.32■□□□□ 0.52
USP28-208ENST00000540438 CCT5P48643 541 aa18.32■□□□□ 0.52
USP28-208ENST00000540438 EPHB4P54760 987 aa18.32■□□□□ 0.52
USP28-208ENST00000540438 ANO5Q75V66 913 aa18.32■□□□□ 0.52
USP28-208ENST00000540438 ZNF526Q8TF50 670 aaPredicted RBP18.32■□□□□ 0.52
USP28-208ENST00000540438 TATDN2Q93075 761 aa18.32■□□□□ 0.52
USP28-208ENST00000540438 BICD1Q96G01 975 aa18.32■□□□□ 0.52
USP28-208ENST00000540438 PCDHB18PQ96TA0 734 aa18.32■□□□□ 0.52
USP28-208ENST00000540438 R3HDMLQ9H3Y0 253 aa18.32■□□□□ 0.52
USP28-208ENST00000540438 MED4Q9NPJ6 270 aa18.32■□□□□ 0.52
USP28-208ENST00000540438 DENND3A2RUS2 1198 aa18.31■□□□□ 0.52
USP28-208ENST00000540438 MMEP08473 750 aa18.31■□□□□ 0.52
USP28-208ENST00000540438 DHX9Q08211 1270 aaKnown RBP18.31■□□□□ 0.52
USP28-208ENST00000540438 NNTQ13423 1086 aa18.31■□□□□ 0.52
USP28-208ENST00000540438 C1orf220Q5T0J3 134 aa18.31■□□□□ 0.52
USP28-208ENST00000540438 NT5DC3Q86UY8 548 aa18.31■□□□□ 0.52
USP28-208ENST00000540438 FAM160B2Q86V87 743 aa18.31■□□□□ 0.52
USP28-208ENST00000540438 TEPSINQ96N21 525 aa18.31■□□□□ 0.52
USP28-208ENST00000540438 QSER1Q2KHR3 1735 aa18.31■□□□□ 0.52
USP28-208ENST00000540438 NPM3O75607 178 aaKnown RBP18.31■□□□□ 0.52
USP28-208ENST00000540438 KRT5P13647 590 aa18.31■□□□□ 0.52
USP28-208ENST00000540438 PRLRP16471 622 aa18.31■□□□□ 0.52
USP28-208ENST00000540438 MCM3P25205 808 aa18.31■□□□□ 0.52
USP28-208ENST00000540438 GJC1P36383 396 aa18.31■□□□□ 0.52
USP28-208ENST00000540438 KCNJ1P48048 391 aa18.31■□□□□ 0.52
USP28-208ENST00000540438 MTERF2Q49AM1 385 aa18.31■□□□□ 0.52
USP28-208ENST00000540438 SPOPLQ6IQ16 392 aa18.31■□□□□ 0.52
USP28-208ENST00000540438 TMEM143Q96AN5 459 aa18.31■□□□□ 0.52
USP28-208ENST00000540438 ZBTB10Q96DT7 871 aa18.31■□□□□ 0.52
USP28-208ENST00000540438 STK33Q9BYT3 514 aa18.31■□□□□ 0.52
USP28-208ENST00000540438 TMEM117Q9H0C3 514 aa18.31■□□□□ 0.52
USP28-208ENST00000540438 DNAJC17Q9NVM6 304 aaKnown RBP18.31■□□□□ 0.52
USP28-208ENST00000540438 CNOT7Q9UIV1 285 aaKnown RBP18.31■□□□□ 0.52
USP28-208ENST00000540438 ZNF862O60290 1169 aa18.31■□□□□ 0.52
USP28-208ENST00000540438 PDCD2LQ9BRP1 358 aa18.31■□□□□ 0.52
USP28-208ENST00000540438 EHMT1Q9H9B1 1298 aa18.31■□□□□ 0.52
USP28-208ENST00000540438 PLAAQ9Y263 795 aa18.31■□□□□ 0.52
USP28-208ENST00000540438 FERP16591 822 aa18.3■□□□□ 0.52
USP28-208ENST00000540438 ACOT2P49753 483 aa18.3■□□□□ 0.52
USP28-208ENST00000540438 TNIP1Q15025 636 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms