RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 IGLV3-22A0A075B6J6 115 aa11.65□□□□□ -0.54
CLIP1-213ENST00000540338 A6NNZ2 444 aa11.65□□□□□ -0.54
CLIP1-213ENST00000540338 K7ERI5 159 aa11.65□□□□□ -0.54
CLIP1-213ENST00000540338 GYS2P54840 703 aa11.65□□□□□ -0.54
CLIP1-213ENST00000540338 PPP1R7Q15435 360 aa11.65□□□□□ -0.54
CLIP1-213ENST00000540338 TUBB8Q3ZCM7 444 aa11.65□□□□□ -0.54
CLIP1-213ENST00000540338 ZNF571Q7Z3V5 609 aaPredicted RBP11.65□□□□□ -0.54
CLIP1-213ENST00000540338 MTMR14Q8NCE2 650 aa11.65□□□□□ -0.54
CLIP1-213ENST00000540338 GPRASP2Q96D09 838 aa11.65□□□□□ -0.54
CLIP1-213ENST00000540338 PKNOX2Q96KN3 472 aa11.65□□□□□ -0.54
CLIP1-213ENST00000540338 SLC38A10Q9HBR0 1119 aa11.65□□□□□ -0.54
CLIP1-213ENST00000540338 ANKFY1Q9P2R3 1169 aa11.65□□□□□ -0.54
CLIP1-213ENST00000540338 DBR1Q9UK59 544 aaKnown RBP11.65□□□□□ -0.54
CLIP1-213ENST00000540338 CEP83Q9Y592 693 aa11.65□□□□□ -0.54
CLIP1-213ENST00000540338 DGAT1O75907 488 aa11.65□□□□□ -0.54
CLIP1-213ENST00000540338 GJC1P36383 396 aa11.65□□□□□ -0.54
CLIP1-213ENST00000540338 RARRES1P49788 294 aa11.65□□□□□ -0.54
CLIP1-213ENST00000540338 CALCOCO2Q13137 446 aa11.65□□□□□ -0.54
CLIP1-213ENST00000540338 MTMR3Q13615 1198 aa11.65□□□□□ -0.54
CLIP1-213ENST00000540338 ZNF653Q96CK0 615 aa11.65□□□□□ -0.54
CLIP1-213ENST00000540338 SMARCAL1Q9NZC9 954 aa11.65□□□□□ -0.54
CLIP1-213ENST00000540338 NFU1Q9UMS0 254 aa11.65□□□□□ -0.54
CLIP1-213ENST00000540338 GSTTP1A0A1W2PQM5 241 aa11.65□□□□□ -0.55
CLIP1-213ENST00000540338 FRMD3A2A2Y4 597 aa11.65□□□□□ -0.55
CLIP1-213ENST00000540338 P4HA2O15460 535 aa11.65□□□□□ -0.55
CLIP1-213ENST00000540338 ITGB5P18084 799 aa11.65□□□□□ -0.55
CLIP1-213ENST00000540338 SPIRE1Q08AE8 756 aa11.65□□□□□ -0.55
CLIP1-213ENST00000540338 ALS2CLQ60I27 953 aa11.65□□□□□ -0.55
CLIP1-213ENST00000540338 ZNF746Q6NUN9 644 aaPredicted RBP11.65□□□□□ -0.55
CLIP1-213ENST00000540338 ZBTB8OSQ8IWT0 167 aa11.65□□□□□ -0.55
CLIP1-213ENST00000540338 C4orf19Q8IY42 314 aa11.65□□□□□ -0.55
CLIP1-213ENST00000540338 AGPAT1Q99943 283 aa11.65□□□□□ -0.55
CLIP1-213ENST00000540338 PACSIN1Q9BY11 444 aa11.65□□□□□ -0.55
CLIP1-213ENST00000540338 VIPAS39Q9H9C1 493 aa11.65□□□□□ -0.55
CLIP1-213ENST00000540338 KIAA1586Q9HCI6 787 aa11.65□□□□□ -0.55
CLIP1-213ENST00000540338 ASTN1O14525 1302 aa11.65□□□□□ -0.55
CLIP1-213ENST00000540338 THSD7AQ9UPZ6 1657 aa11.64□□□□□ -0.55
CLIP1-213ENST00000540338 MYZAPP0CAP1 466 aa11.64□□□□□ -0.55
CLIP1-213ENST00000540338 PIK3CAP42336 1068 aa11.64□□□□□ -0.55
CLIP1-213ENST00000540338 PGM5Q15124 567 aa11.64□□□□□ -0.55
CLIP1-213ENST00000540338 RUFY4Q6ZNE9 571 aa11.64□□□□□ -0.55
CLIP1-213ENST00000540338 RPUSD2Q8IZ73 545 aaKnown RBP11.64□□□□□ -0.55
CLIP1-213ENST00000540338 CCDC113Q9H0I3 377 aa11.64□□□□□ -0.55
CLIP1-213ENST00000540338 DPH5Q9H2P9 285 aa11.64□□□□□ -0.55
CLIP1-213ENST00000540338 PXMP2Q9NR77 195 aa11.64□□□□□ -0.55
CLIP1-213ENST00000540338 INTUQ9ULD6 942 aa11.64□□□□□ -0.55
CLIP1-213ENST00000540338 DIS3Q9Y2L1 958 aaKnown RBP11.64□□□□□ -0.55
CLIP1-213ENST00000540338 FTLP02792 175 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-213ENST00000540338 PTGER2P43116 358 aa11.64□□□□□ -0.55
CLIP1-213ENST00000540338 GPC5P78333 572 aa11.64□□□□□ -0.55
CLIP1-213ENST00000540338 ZSCAN26Q16670 478 aa11.64□□□□□ -0.55
CLIP1-213ENST00000540338 MUM1L1Q5H9M0 696 aa11.64□□□□□ -0.55
CLIP1-213ENST00000540338 CCDC105Q8IYK2 499 aa11.64□□□□□ -0.55
CLIP1-213ENST00000540338 RBM46Q8TBY0 533 aaKnown RBP11.64□□□□□ -0.55
CLIP1-213ENST00000540338 WHAMMQ8TF30 809 aa11.64□□□□□ -0.55
CLIP1-213ENST00000540338 GANQ9H2C0 597 aa11.64□□□□□ -0.55
CLIP1-213ENST00000540338 RBM12Q9NTZ6 932 aaKnown RBP11.64□□□□□ -0.55
CLIP1-213ENST00000540338 ANKRD62A6NC57 917 aa11.64□□□□□ -0.55
CLIP1-213ENST00000540338 ZEB2O60315 1214 aa11.64□□□□□ -0.55
CLIP1-213ENST00000540338 MAPTP10636 758 aaKnown RBP11.64□□□□□ -0.55
CLIP1-213ENST00000540338 SLFN12LQ6IEE8 588 aa11.64□□□□□ -0.55
CLIP1-213ENST00000540338 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.64□□□□□ -0.55
CLIP1-213ENST00000540338 FAM213AQ9BRX8 229 aa11.64□□□□□ -0.55
CLIP1-213ENST00000540338 MTFR1LQ9H019 292 aa11.64□□□□□ -0.55
CLIP1-213ENST00000540338 GGA3Q9NZ52 723 aa11.64□□□□□ -0.55
CLIP1-213ENST00000540338 VWA5AO00534 786 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 FGGP02679 453 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 IREB2P48200 963 aaKnown RBP11.63□□□□□ -0.55
CLIP1-213ENST00000540338 SNRNP35Q16560 246 aaKnown RBP11.63□□□□□ -0.55
CLIP1-213ENST00000540338 XKR3Q5GH77 459 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 SYNCQ9H7C4 482 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 GPRC5CQ9NQ84 441 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 ZNF302Q9NR11 478 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 COL24A1Q17RW2 1714 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 H0YHG0 523 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 ZNF263O14978 683 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 NSFP46459 744 aaKnown RBP11.63□□□□□ -0.55
CLIP1-213ENST00000540338 HSD17B4P51659 736 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 KCTD2Q14681 263 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 EEPD1Q7L9B9 569 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 FBXL13Q8NEE6 735 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 CALR3Q96L12 384 aaKnown RBP11.63□□□□□ -0.55
CLIP1-213ENST00000540338 FAM107BQ9H098 131 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 TSPYL1Q9H0U9 437 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 POLR3FQ9H1D9 316 aaPredicted RBP11.63□□□□□ -0.55
CLIP1-213ENST00000540338 PCDHA2Q9Y5H9 948 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 DESP17661 470 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 CTNNA2P26232 953 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 CTNNA1P35221 906 aaKnown RBP11.63□□□□□ -0.55
CLIP1-213ENST00000540338 KIAA1755Q5JYT7 1200 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 CEP85LQ5SZL2 805 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 HVCN1Q96D96 273 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 GMLQ99445 158 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 CBWD1Q9BRT8 395 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 TLR10Q9BXR5 811 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 FAM114A2Q9NRY5 505 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 EHD2Q9NZN4 543 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 CLEC11AQ9Y240 323 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 UBIAD1Q9Y5Z9 338 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 TLDC2A0PJX2 215 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms