RNA–Protein interactions for RNA: ENST00000539843.5

UBE3B-211, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 2

Gene UBE3B, Length 586 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-211ENST00000539843 VAV3Q9UKW4 847 aa17.1■□□□□ 0.33
UBE3B-211ENST00000539843 TPCN1Q9ULQ1 816 aa17.1■□□□□ 0.33
UBE3B-211ENST00000539843 INPP5FQ9Y2H2 1132 aa17.1■□□□□ 0.33
UBE3B-211ENST00000539843 ERLIN2O94905 339 aa17.09■□□□□ 0.33
UBE3B-211ENST00000539843 PBX3P40426 434 aa17.09■□□□□ 0.33
UBE3B-211ENST00000539843 BCAR1P56945 870 aa17.09■□□□□ 0.33
UBE3B-211ENST00000539843 CBX2Q14781 532 aaPredicted RBP17.09■□□□□ 0.33
UBE3B-211ENST00000539843 PCBP1Q15365 356 aaKnown RBP eCLIP17.09■□□□□ 0.33
UBE3B-211ENST00000539843 XKR9Q5GH70 373 aa17.09■□□□□ 0.33
UBE3B-211ENST00000539843 NOMO2Q5JPE7 1267 aa17.09■□□□□ 0.33
UBE3B-211ENST00000539843 ANKRD54Q6NXT1 300 aa17.09■□□□□ 0.33
UBE3B-211ENST00000539843 ZBTB33Q86T24 672 aa17.09■□□□□ 0.33
UBE3B-211ENST00000539843 FAM193BQ96PV7 902 aaPredicted RBP17.09■□□□□ 0.33
UBE3B-211ENST00000539843 PPP4R2Q9NY27 417 aa17.09■□□□□ 0.33
UBE3B-211ENST00000539843 NR2E1Q9Y466 385 aa17.09■□□□□ 0.33
UBE3B-211ENST00000539843 ATG2AQ2TAZ0 1938 aa17.09■□□□□ 0.33
UBE3B-211ENST00000539843 CNTNAP2Q9UHC6 1331 aa17.08■□□□□ 0.32
UBE3B-211ENST00000539843 SPDYE4A6NLX3 237 aa17.08■□□□□ 0.32
UBE3B-211ENST00000539843 LOC730098B7Z3J9 87 aa17.08■□□□□ 0.32
UBE3B-211ENST00000539843 EML1O00423 815 aa17.08■□□□□ 0.32
UBE3B-211ENST00000539843 STBD1O95210 358 aa17.08■□□□□ 0.32
UBE3B-211ENST00000539843 SRGAP2CP0DJJ0 459 aa17.08■□□□□ 0.32
UBE3B-211ENST00000539843 AK2P54819 239 aa17.08■□□□□ 0.32
UBE3B-211ENST00000539843 TFDP1Q14186 410 aa17.08■□□□□ 0.32
UBE3B-211ENST00000539843 POTEDQ86YR6 584 aa17.08■□□□□ 0.32
UBE3B-211ENST00000539843 HACE1Q8IYU2 909 aa17.08■□□□□ 0.32
UBE3B-211ENST00000539843 CNNM3Q8NE01 707 aa17.08■□□□□ 0.32
UBE3B-211ENST00000539843 EDAQ92838 391 aa17.08■□□□□ 0.32
UBE3B-211ENST00000539843 NECTIN4Q96NY8 510 aa17.08■□□□□ 0.32
UBE3B-211ENST00000539843 CEP89Q96ST8 783 aa17.08■□□□□ 0.32
UBE3B-211ENST00000539843 MTRQ99707 1265 aa17.08■□□□□ 0.32
UBE3B-211ENST00000539843 UBN1Q9NPG3 1134 aa17.08■□□□□ 0.32
UBE3B-211ENST00000539843 AGPAT5Q9NUQ2 364 aa17.08■□□□□ 0.32
UBE3B-211ENST00000539843 KANSL3Q9P2N6 904 aa17.08■□□□□ 0.32
UBE3B-211ENST00000539843 PLXNA4Q9HCM2 1894 aa17.07■□□□□ 0.32
UBE3B-211ENST00000539843 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.07■□□□□ 0.32
UBE3B-211ENST00000539843 HIDE1A8MVS5 230 aa17.07■□□□□ 0.32
UBE3B-211ENST00000539843 ZNF623O75123 536 aa17.07■□□□□ 0.32
UBE3B-211ENST00000539843 NPEPPSP55786 919 aa17.07■□□□□ 0.32
UBE3B-211ENST00000539843 ITIH3Q06033 890 aa17.07■□□□□ 0.32
UBE3B-211ENST00000539843 MXD4Q14582 209 aaPredicted RBP17.07■□□□□ 0.32
UBE3B-211ENST00000539843 EMC2Q15006 297 aa17.07■□□□□ 0.32
UBE3B-211ENST00000539843 SAFBQ15424 915 aaKnown RBP eCLIP17.07■□□□□ 0.32
UBE3B-211ENST00000539843 CALCRLQ16602 461 aa17.07■□□□□ 0.32
UBE3B-211ENST00000539843 ERICH6BQ5W0A0 696 aa17.07■□□□□ 0.32
UBE3B-211ENST00000539843 KSR1Q8IVT5 923 aa17.07■□□□□ 0.32
UBE3B-211ENST00000539843 TPH2Q8IWU9 490 aa17.07■□□□□ 0.32
UBE3B-211ENST00000539843 SUGP1Q8IWZ8 645 aaKnown RBP17.07■□□□□ 0.32
UBE3B-211ENST00000539843 VPS52Q8N1B4 723 aa17.07■□□□□ 0.32
UBE3B-211ENST00000539843 MRPL43Q8N983 215 aaKnown RBP17.07■□□□□ 0.32
UBE3B-211ENST00000539843 PRPF31Q8WWY3 499 aaKnown RBP17.07■□□□□ 0.32
UBE3B-211ENST00000539843 TMEM143Q96AN5 459 aa17.07■□□□□ 0.32
UBE3B-211ENST00000539843 GBP3Q9H0R5 595 aa17.07■□□□□ 0.32
UBE3B-211ENST00000539843 DHX33Q9H6R0 707 aaKnown RBP17.07■□□□□ 0.32
UBE3B-211ENST00000539843 DZANK1Q9NVP4 752 aa17.07■□□□□ 0.32
UBE3B-211ENST00000539843 PCDHA12Q9UN75 941 aa17.07■□□□□ 0.32
UBE3B-211ENST00000539843 PCDHB2Q9Y5E7 798 aa17.07■□□□□ 0.32
UBE3B-211ENST00000539843 C2orf71A6NGG8 1288 aa17.06■□□□□ 0.32
UBE3B-211ENST00000539843 NT5C1B-RDH14C9J2C7 533 aa17.06■□□□□ 0.32
UBE3B-211ENST00000539843 CXCL14O95715 111 aa17.06■□□□□ 0.32
UBE3B-211ENST00000539843 CYP4A11Q02928 519 aa17.06■□□□□ 0.32
UBE3B-211ENST00000539843 LAMTOR4Q0VGL1 99 aa17.06■□□□□ 0.32
UBE3B-211ENST00000539843 LONRF3Q496Y0 759 aa17.06■□□□□ 0.32
UBE3B-211ENST00000539843 PPFIBP1Q86W92 1011 aa17.06■□□□□ 0.32
UBE3B-211ENST00000539843 RNF149Q8NC42 400 aa17.06■□□□□ 0.32
UBE3B-211ENST00000539843 VN1R2Q8NFZ6 395 aa17.06■□□□□ 0.32
UBE3B-211ENST00000539843 OXER1Q8TDS5 423 aa17.06■□□□□ 0.32
UBE3B-211ENST00000539843 SUSD6Q92537 303 aa17.06■□□□□ 0.32
UBE3B-211ENST00000539843 LPPQ93052 612 aa17.06■□□□□ 0.32
UBE3B-211ENST00000539843 GTF3C6Q969F1 213 aa17.06■□□□□ 0.32
UBE3B-211ENST00000539843 DYDC2Q96IM9 177 aa17.06■□□□□ 0.32
UBE3B-211ENST00000539843 RIPOR3Q96MK2 946 aa17.06■□□□□ 0.32
UBE3B-211ENST00000539843 RSAD1Q9HA92 442 aa17.06■□□□□ 0.32
UBE3B-211ENST00000539843 IFT122Q9HBG6 1241 aa17.06■□□□□ 0.32
UBE3B-211ENST00000539843 BMP2KQ9NSY1 1161 aaPredicted RBP17.06■□□□□ 0.32
UBE3B-211ENST00000539843 TBC1D13Q9NVG8 400 aa17.06■□□□□ 0.32
UBE3B-211ENST00000539843 NEMFO60524 1076 aa17.05■□□□□ 0.32
UBE3B-211ENST00000539843 NR1I2O75469 434 aa17.05■□□□□ 0.32
UBE3B-211ENST00000539843 AXLP30530 894 aa17.05■□□□□ 0.32
UBE3B-211ENST00000539843 MTHFRP42898 656 aa17.05■□□□□ 0.32
UBE3B-211ENST00000539843 CTTNQ14247 550 aaKnown RBP17.05■□□□□ 0.32
UBE3B-211ENST00000539843 ELMSAN1Q6PJG2 1045 aa17.05■□□□□ 0.32
UBE3B-211ENST00000539843 TRIM67Q6ZTA4 783 aa17.05■□□□□ 0.32
UBE3B-211ENST00000539843 DDX53Q86TM3 631 aaKnown RBP17.05■□□□□ 0.32
UBE3B-211ENST00000539843 FERMT3Q86UX7 667 aa17.05■□□□□ 0.32
UBE3B-211ENST00000539843 HAS1Q92839 578 aa17.05■□□□□ 0.32
UBE3B-211ENST00000539843 CCDC51Q96ER9 411 aa17.05■□□□□ 0.32
UBE3B-211ENST00000539843 IGSF21Q96ID5 467 aa17.05■□□□□ 0.32
UBE3B-211ENST00000539843 PRRX2Q99811 253 aa17.05■□□□□ 0.32
UBE3B-211ENST00000539843 EMILIN2Q9BXX0 1053 aa17.05■□□□□ 0.32
UBE3B-211ENST00000539843 TRIM6Q9C030 488 aaPredicted RBP17.05■□□□□ 0.32
UBE3B-211ENST00000539843 RGL1Q9NZL6 768 aa17.05■□□□□ 0.32
UBE3B-211ENST00000539843 HCFC2Q9Y5Z7 792 aa17.05■□□□□ 0.32
UBE3B-211ENST00000539843 OFD1O75665 1012 aa17.04■□□□□ 0.32
UBE3B-211ENST00000539843 DGAT1O75907 488 aa17.04■□□□□ 0.32
UBE3B-211ENST00000539843 CTSAP10619 480 aa17.04■□□□□ 0.32
UBE3B-211ENST00000539843 ZXDAP98168 799 aa17.04■□□□□ 0.32
UBE3B-211ENST00000539843 RBM10P98175 930 aaKnown RBP17.04■□□□□ 0.32
UBE3B-211ENST00000539843 NR5A1Q13285 461 aa17.04■□□□□ 0.32
UBE3B-211ENST00000539843 KCNC3Q14003 757 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms