RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 FGFR1OPO95684 399 aaKnown RBP13.32□□□□□ -0.28
USP3-203ENST00000538686 STIP1P31948 543 aaKnown RBP13.32□□□□□ -0.28
USP3-203ENST00000538686 GALK1P51570 392 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 PMS1P54277 932 aaKnown RBP13.32□□□□□ -0.28
USP3-203ENST00000538686 KLRC3Q07444 240 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 HNRNPDQ14103 355 aaKnown RBP13.32□□□□□ -0.28
USP3-203ENST00000538686 SLC18A3Q16572 532 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 VWA3BQ502W6 1294 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 CGB2Q6NT52 195 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 Q6ZNX1 250 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 SYT2Q8N9I0 419 aaPredicted RBP13.32□□□□□ -0.28
USP3-203ENST00000538686 SREK1Q8WXA9 508 aaKnown RBP13.32□□□□□ -0.28
USP3-203ENST00000538686 BAP1Q92560 729 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 AP1M1Q9BXS5 423 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 ANKRD2Q9GZV1 360 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 NT5C3AQ9H0P0 336 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 KCNJ14Q9UNX9 436 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 HBS1LQ9Y450 684 aaKnown RBP13.32□□□□□ -0.28
USP3-203ENST00000538686 SMIM23A6NLE4 172 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 MAGEB2O15479 319 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 SERPINB7O75635 380 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 KRT36O76013 467 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 T-ENOLP0DO92 83 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 RCAN1P53805 252 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 ATP2C1P98194 919 aaPredicted RBP13.32□□□□□ -0.28
USP3-203ENST00000538686 IL9RQ01113 521 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 POU5F1Q01860 360 aaKnown RBP13.32□□□□□ -0.28
USP3-203ENST00000538686 NR5A1Q13285 461 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 KIF22Q14807 665 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 LRRC14Q15048 493 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 EAPPQ56P03 285 aaPredicted RBP13.32□□□□□ -0.28
USP3-203ENST00000538686 ACSBG2Q5FVE4 666 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 SOGA3Q5TF21 947 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 NEPROQ6NW34 567 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 LRRC8BQ6P9F7 803 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 C1orf228Q6PIY5 440 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 TRIM67Q6ZTA4 783 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 MGARPQ8TDB4 240 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 STAMQ92783 540 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 NUDT16Q96DE0 195 aaKnown RBP13.32□□□□□ -0.28
USP3-203ENST00000538686 DUSP9Q99956 384 aaKnown RBP13.32□□□□□ -0.28
USP3-203ENST00000538686 ZDHHC7Q9NXF8 308 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 KIAA1522Q9P206 1035 aaPredicted RBP13.32□□□□□ -0.28
USP3-203ENST00000538686 PPP1R9AQ9ULJ8 1098 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 PACSIN2Q9UNF0 486 aaPredicted RBP13.32□□□□□ -0.28
USP3-203ENST00000538686 SLC12A7Q9Y666 1083 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 LMTK3Q96Q04 1460 aa13.31□□□□□ -0.28
USP3-203ENST00000538686 HOXA10P31260 410 aaPredicted RBP13.31□□□□□ -0.28
USP3-203ENST00000538686 PTENP60484 403 aa13.31□□□□□ -0.28
USP3-203ENST00000538686 PSMC1P62191 440 aaKnown RBP13.31□□□□□ -0.28
USP3-203ENST00000538686 XIAPP98170 497 aa13.31□□□□□ -0.28
USP3-203ENST00000538686 AIMP1Q12904 312 aaKnown RBP13.31□□□□□ -0.28
USP3-203ENST00000538686 ZBTB17Q13105 803 aa13.31□□□□□ -0.28
USP3-203ENST00000538686 SLC45A4Q5BKX6 768 aa13.31□□□□□ -0.28
USP3-203ENST00000538686 HGSNATQ68CP4 663 aa13.31□□□□□ -0.28
USP3-203ENST00000538686 TRIM50Q86XT4 487 aa13.31□□□□□ -0.28
USP3-203ENST00000538686 PEX5LQ8IYB4 626 aa13.31□□□□□ -0.28
USP3-203ENST00000538686 SYCE1Q8N0S2 351 aa13.31□□□□□ -0.28
USP3-203ENST00000538686 CYP4X1Q8N118 509 aa13.31□□□□□ -0.28
USP3-203ENST00000538686 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.31□□□□□ -0.28
USP3-203ENST00000538686 ZNF398Q8TD17 642 aa13.31□□□□□ -0.28
USP3-203ENST00000538686 PLEKHO2Q8TD55 490 aa13.31□□□□□ -0.28
USP3-203ENST00000538686 ESR2Q92731 530 aa13.31□□□□□ -0.28
USP3-203ENST00000538686 AP1G1O43747 822 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 EIF2S1P05198 315 aaKnown RBP13.3□□□□□ -0.28
USP3-203ENST00000538686 RARGP13631 454 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 GTF2H1P32780 548 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 CCT8P50990 548 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 DR1Q01658 176 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 PTPN12Q05209 780 aaKnown RBP13.3□□□□□ -0.28
USP3-203ENST00000538686 MAN2A1Q16706 1144 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 VSTM1Q6UX27 236 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 IZUMO2Q6UXV1 221 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 BARGINQ6ZT62 677 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 HELBQ8NG08 1087 aaPredicted RBP13.3□□□□□ -0.28
USP3-203ENST00000538686 EPS8L3Q8TE67 593 aaKnown RBP13.3□□□□□ -0.28
USP3-203ENST00000538686 OSBP2Q969R2 916 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 FNBP1Q96RU3 617 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 BTBD10Q9BSF8 475 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 MMRN2Q9H8L6 949 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 FAM207AQ9NSI2 230 aaPredicted RBP13.3□□□□□ -0.28
USP3-203ENST00000538686 ZNHIT2Q9UHR6 403 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 RPTORQ8N122 1335 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 SH3PXD2BA1X283 911 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 BOLA2-SMG1P6H3BVE0 249 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 RIPK2O43353 540 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 RXRAP19793 462 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 KRT2P35908 639 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 IGHMBP2P38935 993 aaKnown RBP13.3□□□□□ -0.28
USP3-203ENST00000538686 RPL5P46777 297 aaKnown RBP13.3□□□□□ -0.28
USP3-203ENST00000538686 RFX5P48382 616 aaPredicted RBP13.3□□□□□ -0.28
USP3-203ENST00000538686 COBLL1Q53SF7 1204 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 MAP3K21Q5TCX8 1036 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 ZNF449Q6P9G9 518 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 KLHL35Q6PF15 583 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 SLC2A7Q6PXP3 512 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 RGS9BPQ6ZS82 235 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 TRMT10CQ7L0Y3 403 aaKnown RBP13.3□□□□□ -0.28
USP3-203ENST00000538686 CYB5R4Q7L1T6 521 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 KBTBD2Q8IY47 623 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms