RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 GCFC2P16383 781 aaKnown RBP12.6□□□□□ -0.39
CLSTN3-206ENST00000535668 IRX6P78412 446 aaPredicted RBP12.6□□□□□ -0.39
CLSTN3-206ENST00000535668 DRP2Q13474 957 aa12.6□□□□□ -0.39
CLSTN3-206ENST00000535668 PLPP4Q5VZY2 271 aa12.6□□□□□ -0.39
CLSTN3-206ENST00000535668 CES5AQ6NT32 575 aa12.6□□□□□ -0.39
CLSTN3-206ENST00000535668 SRGAP1Q7Z6B7 1085 aa12.6□□□□□ -0.39
CLSTN3-206ENST00000535668 IFNLR1Q8IU57 520 aaPredicted RBP12.6□□□□□ -0.39
CLSTN3-206ENST00000535668 TRIM22Q8IYM9 498 aa12.6□□□□□ -0.39
CLSTN3-206ENST00000535668 RNF168Q8IYW5 571 aaPredicted RBP12.6□□□□□ -0.39
CLSTN3-206ENST00000535668 BLIDQ8IZY5 108 aa12.6□□□□□ -0.39
CLSTN3-206ENST00000535668 CMASQ8NFW8 434 aaPredicted RBP12.6□□□□□ -0.39
CLSTN3-206ENST00000535668 TMEM169Q96HH4 297 aa12.6□□□□□ -0.39
CLSTN3-206ENST00000535668 AGPAT5Q9NUQ2 364 aa12.6□□□□□ -0.39
CLSTN3-206ENST00000535668 FAM105AQ9NUU6 356 aa12.6□□□□□ -0.39
CLSTN3-206ENST00000535668 TBC1D13Q9NVG8 400 aa12.6□□□□□ -0.39
CLSTN3-206ENST00000535668 VPS54Q9P1Q0 977 aa12.6□□□□□ -0.39
CLSTN3-206ENST00000535668 KANSL3Q9P2N6 904 aa12.6□□□□□ -0.39
CLSTN3-206ENST00000535668 VAV3Q9UKW4 847 aa12.6□□□□□ -0.39
CLSTN3-206ENST00000535668 CNTNAP2Q9UHC6 1331 aa12.6□□□□□ -0.39
CLSTN3-206ENST00000535668 ASAP2O43150 1006 aa12.59□□□□□ -0.39
CLSTN3-206ENST00000535668 HOXA11P31270 313 aaPredicted RBP12.59□□□□□ -0.39
CLSTN3-206ENST00000535668 MTMR3Q13615 1198 aa12.59□□□□□ -0.39
CLSTN3-206ENST00000535668 NOMO2Q5JPE7 1267 aa12.59□□□□□ -0.39
CLSTN3-206ENST00000535668 GLB1LQ6UWU2 654 aa12.59□□□□□ -0.39
CLSTN3-206ENST00000535668 C15orf39Q6ZRI6 1047 aa12.59□□□□□ -0.39
CLSTN3-206ENST00000535668 MIER3Q7Z3K6 550 aa12.59□□□□□ -0.39
CLSTN3-206ENST00000535668 KRT25Q7Z3Z0 450 aa12.59□□□□□ -0.39
CLSTN3-206ENST00000535668 C4orf19Q8IY42 314 aa12.59□□□□□ -0.39
CLSTN3-206ENST00000535668 HELQQ8TDG4 1101 aa12.59□□□□□ -0.39
CLSTN3-206ENST00000535668 NLRP7Q8WX94 980 aa12.59□□□□□ -0.39
CLSTN3-206ENST00000535668 TMEM175Q9BSA9 504 aa12.59□□□□□ -0.39
CLSTN3-206ENST00000535668 SLC26A6Q9BXS9 759 aa12.59□□□□□ -0.39
CLSTN3-206ENST00000535668 POMKQ9H5K3 350 aa12.59□□□□□ -0.39
CLSTN3-206ENST00000535668 NRDE2Q9H7Z3 1164 aa12.59□□□□□ -0.39
CLSTN3-206ENST00000535668 CYP26B1Q9NR63 512 aa12.59□□□□□ -0.39
CLSTN3-206ENST00000535668 VPS13AQ96RL7 3174 aa12.59□□□□□ -0.39
CLSTN3-206ENST00000535668 A0A087WZ62 844 aa12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 LYPLA2O95372 231 aa12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 CXCL14O95715 111 aa12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 P4HBP07237 508 aaKnown RBP12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 RFC5P40937 340 aa12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 QARSP47897 775 aaKnown RBP12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 CLCN5P51795 746 aa12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 NLRP5P59047 1200 aa12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 SSRP1Q08945 709 aaKnown RBP12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 SPIRE1Q08AE8 756 aa12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 NONOQ15233 471 aaKnown RBP eCLIP12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 ATAT1Q5SQI0 421 aa12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 AGMOQ6ZNB7 445 aa12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 DENND4AQ7Z401 1863 aa12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 GPR149Q86SP6 731 aa12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 TMEM173Q86WV6 379 aaPredicted RBP12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 VPS52Q8N1B4 723 aa12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 CNNM3Q8NE01 707 aa12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 HDAC7Q8WUI4 952 aa12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 PGBD4Q96DM1 585 aa12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 CCDC51Q96ER9 411 aa12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 NAP1L4Q99733 375 aaKnown RBP12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 FDXACB1Q9BRP7 624 aaPredicted RBP12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 PHF20Q9BVI0 1012 aa12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 VN1R3Q9BXE9 311 aa12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 NFKBIZQ9BYH8 718 aa12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 UBN1Q9NPG3 1134 aa12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 SUCLA2Q9P2R7 463 aaPredicted RBP12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 STK36Q9NRP7 1315 aa12.58□□□□□ -0.4
CLSTN3-206ENST00000535668 C2CD4DB7Z1M9 353 aa12.57□□□□□ -0.4
CLSTN3-206ENST00000535668 GALR2O43603 387 aaPredicted RBP12.57□□□□□ -0.4
CLSTN3-206ENST00000535668 TDP2O95551 362 aa12.57□□□□□ -0.4
CLSTN3-206ENST00000535668 AXLP30530 894 aa12.57□□□□□ -0.4
CLSTN3-206ENST00000535668 PBX3P40426 434 aa12.57□□□□□ -0.4
CLSTN3-206ENST00000535668 NBL1P41271 181 aa12.57□□□□□ -0.4
CLSTN3-206ENST00000535668 DSC1Q08554 894 aa12.57□□□□□ -0.4
CLSTN3-206ENST00000535668 PTPN14Q15678 1187 aa12.57□□□□□ -0.4
CLSTN3-206ENST00000535668 KREMEN2Q8NCW0 462 aa12.57□□□□□ -0.4
CLSTN3-206ENST00000535668 SLC7A3Q8WY07 619 aa12.57□□□□□ -0.4
CLSTN3-206ENST00000535668 HAS1Q92839 578 aa12.57□□□□□ -0.4
CLSTN3-206ENST00000535668 PPP1R16BQ96T49 567 aa12.57□□□□□ -0.4
CLSTN3-206ENST00000535668 PCDHB2Q9Y5E7 798 aa12.57□□□□□ -0.4
CLSTN3-206ENST00000535668 EML1O00423 815 aa12.56□□□□□ -0.4
CLSTN3-206ENST00000535668 BRD1O95696 1058 aa12.56□□□□□ -0.4
CLSTN3-206ENST00000535668 NCLP19338 710 aaKnown RBP12.56□□□□□ -0.4
CLSTN3-206ENST00000535668 CLCN4P51793 760 aa12.56□□□□□ -0.4
CLSTN3-206ENST00000535668 VCPP55072 806 aaKnown RBP12.56□□□□□ -0.4
CLSTN3-206ENST00000535668 EPHA7Q15375 998 aa12.56□□□□□ -0.4
CLSTN3-206ENST00000535668 UBXN11Q5T124 520 aa12.56□□□□□ -0.4
CLSTN3-206ENST00000535668 TWF2Q6IBS0 349 aaKnown RBP12.56□□□□□ -0.4
CLSTN3-206ENST00000535668 CPLX2Q6PUV4 134 aaKnown RBP12.56□□□□□ -0.4
CLSTN3-206ENST00000535668 BCL7CQ8WUZ0 217 aaPredicted RBP12.56□□□□□ -0.4
CLSTN3-206ENST00000535668 HSD17B14Q9BPX1 270 aa12.56□□□□□ -0.4
CLSTN3-206ENST00000535668 SFXN1Q9H9B4 322 aa12.56□□□□□ -0.4
CLSTN3-206ENST00000535668 RXFP1Q9HBX9 757 aa12.56□□□□□ -0.4
CLSTN3-206ENST00000535668 NCOA5Q9HCD5 579 aaKnown RBP12.56□□□□□ -0.4
CLSTN3-206ENST00000535668 SEPT9Q9UHD8 586 aaPredicted RBP12.56□□□□□ -0.4
CLSTN3-206ENST00000535668 DDX25Q9UHL0 483 aaKnown RBP12.56□□□□□ -0.4
CLSTN3-206ENST00000535668 SSX2IPQ9Y2D8 614 aa12.56□□□□□ -0.4
CLSTN3-206ENST00000535668 COL4A3BPQ9Y5P4 624 aa12.56□□□□□ -0.4
CLSTN3-206ENST00000535668 CYP46A1Q9Y6A2 500 aa12.56□□□□□ -0.4
CLSTN3-206ENST00000535668 OTOGLQ3ZCN5 2332 aa12.56□□□□□ -0.4
CLSTN3-206ENST00000535668 SLC37A4O43826 429 aa12.55□□□□□ -0.4
CLSTN3-206ENST00000535668 B4GALT3O60512 393 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms