RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	PPARA	Q07869	468 aa		3.89	□□□□□ -1.79
CD44-238	ENST00000534296	SPIDR	Q14159	915 aa		3.89	□□□□□ -1.79
CD44-238	ENST00000534296	ZNF662	Q6ZS27	426 aa		3.89	□□□□□ -1.79
CD44-238	ENST00000534296	CLEC14A	Q86T13	490 aa		3.89	□□□□□ -1.79
CD44-238	ENST00000534296	RNF180	Q86T96	592 aa		3.89	□□□□□ -1.79
CD44-238	ENST00000534296	THNSL2	Q86YJ6	484 aa		3.89	□□□□□ -1.79
CD44-238	ENST00000534296	UNC5B	Q8IZJ1	945 aa		3.89	□□□□□ -1.79
CD44-238	ENST00000534296	THEMIS	Q8N1K5	641 aa	Predicted RBP	3.89	□□□□□ -1.79
CD44-238	ENST00000534296	OR14C36	Q8NHC7	312 aa		3.89	□□□□□ -1.79
CD44-238	ENST00000534296	GAB3	Q8WWW8	586 aa		3.89	□□□□□ -1.79
CD44-238	ENST00000534296	ACAP3	Q96P50	834 aa		3.89	□□□□□ -1.79
CD44-238	ENST00000534296	KRTAP3-1	Q9BYR8	98 aa		3.89	□□□□□ -1.79
CD44-238	ENST00000534296	EPC1	Q9H2F5	836 aa		3.89	□□□□□ -1.79
CD44-238	ENST00000534296	IL23A	Q9NPF7	189 aa		3.89	□□□□□ -1.79
CD44-238	ENST00000534296	TLR9	Q9NR96	1032 aa		3.89	□□□□□ -1.79
CD44-238	ENST00000534296	JAG2	Q9Y219	1238 aa		3.89	□□□□□ -1.79
CD44-238	ENST00000534296	GIT1	Q9Y2X7	761 aa		3.89	□□□□□ -1.79
CD44-238	ENST00000534296	NUMBL	Q9Y6R0	609 aa		3.89	□□□□□ -1.79
CD44-238	ENST00000534296	SHROOM4	Q9ULL8	1493 aa		3.88	□□□□□ -1.79
CD44-238	ENST00000534296	C2orf78	A6NCI8	922 aa		3.88	□□□□□ -1.79
CD44-238	ENST00000534296	PFKM	P08237	780 aa		3.88	□□□□□ -1.79
CD44-238	ENST00000534296	HNRNPL	P14866	589 aa	Known RBP eCLIP	3.88	□□□□□ -1.79
CD44-238	ENST00000534296	ACRV1	P26436	265 aa		3.88	□□□□□ -1.79
CD44-238	ENST00000534296	HIBADH	P31937	336 aa	Known RBP	3.88	□□□□□ -1.79
CD44-238	ENST00000534296	MEF2A	Q02078	507 aa	Predicted RBP	3.88	□□□□□ -1.79
CD44-238	ENST00000534296	NRN1L	Q496H8	165 aa		3.88	□□□□□ -1.79
CD44-238	ENST00000534296	RNF187	Q5TA31	235 aa	Predicted RBP	3.88	□□□□□ -1.79
CD44-238	ENST00000534296	IQSEC1	Q6DN90	963 aa		3.88	□□□□□ -1.79
CD44-238	ENST00000534296	FAM111B	Q6SJ93	734 aa		3.88	□□□□□ -1.79
CD44-238	ENST00000534296	FAM180A	Q6UWF9	173 aa		3.88	□□□□□ -1.79
CD44-238	ENST00000534296	GAREM2	Q75VX8	874 aa		3.88	□□□□□ -1.79
CD44-238	ENST00000534296	GSPT2	Q8IYD1	628 aa	Known RBP	3.88	□□□□□ -1.79
CD44-238	ENST00000534296	GPR135	Q8IZ08	494 aa		3.88	□□□□□ -1.79
CD44-238	ENST00000534296	RAX2	Q96IS3	184 aa		3.88	□□□□□ -1.79
CD44-238	ENST00000534296	ZNF496	Q96IT1	587 aa	Predicted RBP	3.88	□□□□□ -1.79
CD44-238	ENST00000534296	MCM8	Q9UJA3	840 aa		3.88	□□□□□ -1.79
CD44-238	ENST00000534296	ZBTB21	Q9ULJ3	1066 aa		3.88	□□□□□ -1.79
CD44-238	ENST00000534296	UBE2QL1	A1L167	161 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	ELL2	O00472	640 aa	Predicted RBP	3.87	□□□□□ -1.79
CD44-238	ENST00000534296	NEMP1	O14524	444 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	MFAP3L	O75121	409 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	ALDH1A2	O94788	518 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	MTHFD2	P13995	350 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	GNAT2	P19087	354 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	CANX	P27824	592 aa	Known RBP	3.87	□□□□□ -1.79
CD44-238	ENST00000534296	MASP1	P48740	699 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	MANF	P55145	182 aa	Known RBP	3.87	□□□□□ -1.79
CD44-238	ENST00000534296	WNT3A	P56704	352 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	DUSP2	Q05923	314 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	FOXL1	Q12952	345 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	DUSP8	Q13202	625 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	CNGB1	Q14028	1251 aa	Predicted RBP	3.87	□□□□□ -1.79
CD44-238	ENST00000534296	ELAVL1	Q15717	326 aa	Known RBP	3.87	□□□□□ -1.79
CD44-238	ENST00000534296	UGT8	Q16880	541 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	USP39	Q53GS9	565 aa	Known RBP	3.87	□□□□□ -1.79
CD44-238	ENST00000534296	SPDYA	Q5MJ70	313 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	ZBTB41	Q5SVQ8	909 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	FKBP15	Q5T1M5	1219 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	CCDC62	Q6P9F0	684 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	MAMDC4	Q6UXC1	1216 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	UNQ6494/PRO21346	Q6UXR6	183 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	CMTM4	Q8IZR5	234 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	MIEF2	Q96C03	454 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	WWC2-AS2	Q96NR7	200 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	ZNF341	Q9BYN7	854 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	ANO3	Q9BYT9	981 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	CSRNP2	Q9H175	543 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	VPS11	Q9H270	941 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	PPP2R3B	Q9Y5P8	575 aa		3.87	□□□□□ -1.79
CD44-238	ENST00000534296	PRSS38	A1L453	326 aa		3.86	□□□□□ -1.79
CD44-238	ENST00000534296	MATN3	O15232	486 aa		3.86	□□□□□ -1.79
CD44-238	ENST00000534296	PRAMEF4	O60810	478 aa		3.86	□□□□□ -1.79
CD44-238	ENST00000534296	SEC24D	O94855	1032 aa	Predicted RBP	3.86	□□□□□ -1.79
CD44-238	ENST00000534296	GAA	P10253	952 aa		3.86	□□□□□ -1.79
CD44-238	ENST00000534296	GYPE	P15421	78 aa		3.86	□□□□□ -1.79
CD44-238	ENST00000534296	TNFRSF1A	P19438	455 aa		3.86	□□□□□ -1.79
CD44-238	ENST00000534296	TACR2	P21452	398 aa		3.86	□□□□□ -1.79
CD44-238	ENST00000534296	GDF5	P43026	501 aa		3.86	□□□□□ -1.79
CD44-238	ENST00000534296	TMPRSS15	P98073	1019 aa		3.86	□□□□□ -1.79
CD44-238	ENST00000534296	MGAT5	Q09328	741 aa		3.86	□□□□□ -1.79
CD44-238	ENST00000534296	R3HDM1	Q15032	1099 aa	Known RBP	3.86	□□□□□ -1.79
CD44-238	ENST00000534296	RNF207	Q6ZRF8	634 aa		3.86	□□□□□ -1.79
CD44-238	ENST00000534296	KRT26	Q7Z3Y9	468 aa		3.86	□□□□□ -1.79
CD44-238	ENST00000534296	SPRED1	Q7Z699	444 aa		3.86	□□□□□ -1.79
CD44-238	ENST00000534296	C1orf210	Q8IVY1	113 aa		3.86	□□□□□ -1.79
CD44-238	ENST00000534296	ZNF808	Q8N4W9	903 aa	Predicted RBP	3.86	□□□□□ -1.79
CD44-238	ENST00000534296	UBR7	Q8N806	425 aa		3.86	□□□□□ -1.79
CD44-238	ENST00000534296	OR5M3	Q8NGP4	307 aa		3.86	□□□□□ -1.79
CD44-238	ENST00000534296	ATL2	Q8NHH9	583 aa		3.86	□□□□□ -1.79
CD44-238	ENST00000534296	GPHA2	Q96T91	129 aa		3.86	□□□□□ -1.79
CD44-238	ENST00000534296	PARPBP	Q9NWS1	579 aa		3.86	□□□□□ -1.79
CD44-238	ENST00000534296	SRRD	Q9UH36	339 aa		3.86	□□□□□ -1.79
CD44-238	ENST00000534296	PRSS50	Q9UI38	385 aa		3.86	□□□□□ -1.79
CD44-238	ENST00000534296	HDAC5	Q9UQL6	1122 aa		3.86	□□□□□ -1.79
CD44-238	ENST00000534296	GOLGA6L6	A8MZA4	724 aa		3.85	□□□□□ -1.79
CD44-238	ENST00000534296	FZD7	O75084	574 aa		3.85	□□□□□ -1.79
CD44-238	ENST00000534296	LY86	O95711	162 aa		3.85	□□□□□ -1.79
CD44-238	ENST00000534296	VIL1	P09327	827 aa	Known RBP	3.85	□□□□□ -1.79
CD44-238	ENST00000534296	CLEC2L	P0C7M8	214 aa		3.85	□□□□□ -1.79
CD44-238	ENST00000534296	C6	P13671	934 aa		3.85	□□□□□ -1.79

Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms