RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-208ENST00000534106 SHISA3A0PJX4 238 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 CHURC1-FNTBB4DL54 471 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 MSCO60682 206 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 VAMP4O75379 141 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 FGBP02675 491 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 PGK2P07205 417 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 HOXC6P09630 235 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 IFIT1P09914 478 aaKnown RBP3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 PTGS1P23219 599 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 ADORA2AP29274 412 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 CCL23P55773 120 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 MECOMQ03112 1051 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 GRB14Q14449 540 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 AAK1Q2M2I8 961 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 MEI1Q5TIA1 1274 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 SLC4A10Q6U841 1118 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 CATSPERGQ6ZRH7 1159 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 ATG9AQ7Z3C6 839 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 PRSS33Q8NF86 280 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 ARNTL2Q8WYA1 636 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 HERVK_113Q902F9 699 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 MOV10L1Q9BXT6 1211 aaKnown RBP3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 OSBPL5Q9H0X9 879 aaPredicted RBP3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 DNAJC18Q9H819 358 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 XPNPEP3Q9NQH7 507 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 FAM86C1Q9NVL1 165 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 ABCF2Q9UG63 623 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 EBF1Q9UH73 591 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 MBD1Q9UIS9 605 aaPredicted RBP3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 TBX21Q9UL17 535 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 RABGAP1Q9Y3P9 1069 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 LAMB1P07942 1786 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 GAKO14976 1311 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 MAST3O60307 1309 aa3.68□□□□□ -1.82
CHMP4A-208ENST00000534106 PRRC2BQ5JSZ5 2229 aaKnown RBP3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 GPR75-ASB3A0A0A6YYF3 556 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 RBM47A0AV96 593 aaKnown RBP3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 OTOL1A6NHN0 477 aaPredicted RBP3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 LPXNO60711 386 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 PRPF40AO75400 957 aaKnown RBP3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 GLRX3O76003 335 aaKnown RBP3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 CA3P07451 260 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 CELA3BP08861 270 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 IL9P15248 144 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 ERCC3P19447 782 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 RFX5P48382 616 aaPredicted RBP3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 CDK7P50613 346 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 ACLYP53396 1101 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 PCBP3P57721 371 aaKnown RBP3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 TIMM10P62072 90 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 NMIQ13287 307 aaPredicted RBP3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 PPIGQ13427 754 aaKnown RBP eCLIP3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 PLS1Q14651 629 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 WDR43Q15061 677 aaKnown RBP eCLIP3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 PUM3Q15397 648 aaKnown RBP3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 RAB30Q15771 203 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 KIAA1755Q5JYT7 1200 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 TMEM201Q5SNT2 666 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 CCSAPQ6IQ19 270 aaPredicted RBP3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 CNKSR3Q6P9H4 555 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 RNF111Q6ZNA4 994 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 ANKRD33Q7Z3H0 272 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 TMCO2Q7Z6W1 182 aaPredicted RBP3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 DZIP1Q86YF9 867 aaKnown RBP3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 MAPKAPK5Q8IW41 473 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 GADD45GIP1Q8TAE8 222 aaPredicted RBP3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 CXorf38Q8TB03 319 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 FEZF2Q8TBJ5 459 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 SH3RF3Q8TEJ3 882 aaPredicted RBP3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 LINC01599Q8WXQ3 324 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 KIF2CQ99661 725 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 DUSP9Q99956 384 aaKnown RBP3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 FOXP3Q9BZS1 431 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 SIL1Q9H173 461 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 AS3MTQ9HBK9 375 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 IL23AQ9NPF7 189 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 RTEL1Q9NZ71 1219 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 REV1Q9UBZ9 1251 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 SAP30BPQ9UHR5 308 aaKnown RBP3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 PALD1Q9ULE6 856 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 EPG5Q9HCE0 2579 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 SPEF2Q9C093 1822 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 DCHS1Q96JQ0 3298 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 VPS13AQ96RL7 3174 aa3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 MYBBP1AQ9BQG0 1328 aaKnown RBP3.67□□□□□ -1.82
CHMP4A-208ENST00000534106 RFX7Q2KHR2 1363 aa3.66□□□□□ -1.82
CHMP4A-208ENST00000534106 PLXNB2O15031 1838 aa3.66□□□□□ -1.82
CHMP4A-208ENST00000534106 LCHNA4D1U4 455 aa3.66□□□□□ -1.82
CHMP4A-208ENST00000534106 C19orf81C9J6K1 198 aa3.66□□□□□ -1.82
CHMP4A-208ENST00000534106 EYA2O00167 538 aa3.66□□□□□ -1.82
CHMP4A-208ENST00000534106 ABLIM1O14639 778 aa3.66□□□□□ -1.82
CHMP4A-208ENST00000534106 N4BP3O15049 544 aa3.66□□□□□ -1.82
CHMP4A-208ENST00000534106 ADCY6O43306 1168 aa3.66□□□□□ -1.82
CHMP4A-208ENST00000534106 NRDCO43847 1150 aa3.66□□□□□ -1.82
CHMP4A-208ENST00000534106 GH2P01242 217 aa3.66□□□□□ -1.82
CHMP4A-208ENST00000534106 RARBP10826 455 aa3.66□□□□□ -1.82
CHMP4A-208ENST00000534106 SLC5A1P13866 664 aa3.66□□□□□ -1.82
CHMP4A-208ENST00000534106 VCAM1P19320 739 aa3.66□□□□□ -1.82
CHMP4A-208ENST00000534106 SDHBP21912 280 aa3.66□□□□□ -1.82
CHMP4A-208ENST00000534106 VIPR1P32241 457 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms