RNA–Protein interactions for RNA: ENST00000533464.5

PHRF1-205, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-205ENST00000533464 GPD1LQ8N335 351 aa18.78■□□□□ 0.6
PHRF1-205ENST00000533464 TOPORSQ9NS56 1045 aaPredicted RBP18.78■□□□□ 0.6
PHRF1-205ENST00000533464 GRID2IPA4D2P6 1211 aa18.78■□□□□ 0.6
PHRF1-205ENST00000533464 AGO2Q9UKV8 859 aaKnown RBP18.78■□□□□ 0.6
PHRF1-205ENST00000533464 MEGF6O75095 1541 aa18.78■□□□□ 0.6
PHRF1-205ENST00000533464 TNFAIP2Q03169 654 aa18.78■□□□□ 0.6
PHRF1-205ENST00000533464 NUGGCQ68CJ6 796 aa18.78■□□□□ 0.6
PHRF1-205ENST00000533464 C4orf50Q6ZRC1 276 aa18.78■□□□□ 0.6
PHRF1-205ENST00000533464 BBS5Q8N3I7 341 aa18.78■□□□□ 0.6
PHRF1-205ENST00000533464 MICAL1Q8TDZ2 1067 aa18.78■□□□□ 0.6
PHRF1-205ENST00000533464 PLS3P13797 630 aa18.77■□□□□ 0.6
PHRF1-205ENST00000533464 TTLL4Q14679 1199 aa18.77■□□□□ 0.6
PHRF1-205ENST00000533464 SNCBQ16143 134 aa18.77■□□□□ 0.6
PHRF1-205ENST00000533464 DCLK2Q8N568 766 aa18.77■□□□□ 0.6
PHRF1-205ENST00000533464 MCUQ8NE86 351 aa18.77■□□□□ 0.6
PHRF1-205ENST00000533464 ZNF526Q8TF50 670 aaPredicted RBP18.77■□□□□ 0.6
PHRF1-205ENST00000533464 NOC2LQ9Y3T9 749 aaKnown RBP18.77■□□□□ 0.6
PHRF1-205ENST00000533464 UBE4BO95155 1302 aa18.77■□□□□ 0.6
PHRF1-205ENST00000533464 ARPP19P56211 112 aa18.77■□□□□ 0.6
PHRF1-205ENST00000533464 JPH1Q9HDC5 661 aaPredicted RBP18.77■□□□□ 0.6
PHRF1-205ENST00000533464 SNX12Q9UMY4 172 aa18.77■□□□□ 0.6
PHRF1-205ENST00000533464 BAATQ14032 418 aaPredicted RBP18.77■□□□□ 0.6
PHRF1-205ENST00000533464 SLC18A3Q16572 532 aa18.77■□□□□ 0.6
PHRF1-205ENST00000533464 CALR3Q96L12 384 aaKnown RBP18.77■□□□□ 0.6
PHRF1-205ENST00000533464 MRPL4Q9BYD3 311 aaKnown RBP18.77■□□□□ 0.6
PHRF1-205ENST00000533464 COL3A1P02461 1466 aaPredicted RBP18.77■□□□□ 0.6
PHRF1-205ENST00000533464 A0A087WUV0 522 aaPredicted RBP18.77■□□□□ 0.59
PHRF1-205ENST00000533464 VSNL1P62760 191 aa18.77■□□□□ 0.59
PHRF1-205ENST00000533464 LMBRD2Q68DH5 695 aaPredicted RBP18.77■□□□□ 0.59
PHRF1-205ENST00000533464 C2orf40Q9H1Z8 148 aa18.77■□□□□ 0.59
PHRF1-205ENST00000533464 MAD2L2Q9UI95 211 aa18.77■□□□□ 0.59
PHRF1-205ENST00000533464 HNRNPH2P55795 449 aaKnown RBP18.77■□□□□ 0.59
PHRF1-205ENST00000533464 ZNF70Q9UC06 446 aaPredicted RBP18.77■□□□□ 0.59
PHRF1-205ENST00000533464 STRIP2Q9ULQ0 834 aa18.77■□□□□ 0.59
PHRF1-205ENST00000533464 TTC7AQ9ULT0 858 aaPredicted RBP18.77■□□□□ 0.59
PHRF1-205ENST00000533464 GYPCP04921 128 aa18.76■□□□□ 0.59
PHRF1-205ENST00000533464 SMARCA1P28370 1054 aa18.76■□□□□ 0.59
PHRF1-205ENST00000533464 TFDP2Q14188 446 aa18.76■□□□□ 0.59
PHRF1-205ENST00000533464 PCSK1NQ9UHG2 260 aa18.76■□□□□ 0.59
PHRF1-205ENST00000533464 ZNF185O15231 689 aa18.76■□□□□ 0.59
PHRF1-205ENST00000533464 CYP26A1O43174 497 aa18.76■□□□□ 0.59
PHRF1-205ENST00000533464 EVI5O60447 810 aa18.76■□□□□ 0.59
PHRF1-205ENST00000533464 ENOSF1Q7L5Y1 443 aa18.76■□□□□ 0.59
PHRF1-205ENST00000533464 FAF2Q96CS3 445 aa18.76■□□□□ 0.59
PHRF1-205ENST00000533464 TAF1DQ9H5J8 278 aaPredicted RBP18.76■□□□□ 0.59
PHRF1-205ENST00000533464 VCPKMTQ9H867 229 aa18.76■□□□□ 0.59
PHRF1-205ENST00000533464 TLK1Q9UKI8 766 aa18.76■□□□□ 0.59
PHRF1-205ENST00000533464 WDR46O15213 610 aaKnown RBP18.76■□□□□ 0.59
PHRF1-205ENST00000533464 UCHL3P15374 230 aa18.76■□□□□ 0.59
PHRF1-205ENST00000533464 COG2Q14746 738 aa18.76■□□□□ 0.59
PHRF1-205ENST00000533464 LPAR1Q92633 364 aa18.76■□□□□ 0.59
PHRF1-205ENST00000533464 HDAC11Q96DB2 347 aa18.76■□□□□ 0.59
PHRF1-205ENST00000533464 SPATA33Q96N06 139 aa18.76■□□□□ 0.59
PHRF1-205ENST00000533464 AGPAT1Q99943 283 aa18.76■□□□□ 0.59
PHRF1-205ENST00000533464 TRIM10Q9UDY6 481 aa18.76■□□□□ 0.59
PHRF1-205ENST00000533464 SSU72P8A0A1W2PR75 194 aa18.76■□□□□ 0.59
PHRF1-205ENST00000533464 FGFR2P21802 821 aa18.76■□□□□ 0.59
PHRF1-205ENST00000533464 MAP2K2P36507 400 aa18.76■□□□□ 0.59
PHRF1-205ENST00000533464 SLC12A6Q9UHW9 1150 aa18.76■□□□□ 0.59
PHRF1-205ENST00000533464 SLC16A3O15427 465 aaKnown RBP18.75■□□□□ 0.59
PHRF1-205ENST00000533464 CHRNA3P32297 505 aa18.75■□□□□ 0.59
PHRF1-205ENST00000533464 SH2D4BQ5SQS7 431 aa18.75■□□□□ 0.59
PHRF1-205ENST00000533464 TTC13Q8NBP0 860 aa18.75■□□□□ 0.59
PHRF1-205ENST00000533464 PPP1R3GB7ZBB8 358 aa18.75■□□□□ 0.59
PHRF1-205ENST00000533464 MYBP10242 640 aa18.75■□□□□ 0.59
PHRF1-205ENST00000533464 TRIM59Q8IWR1 403 aa18.75■□□□□ 0.59
PHRF1-205ENST00000533464 MICALL2Q8IY33 904 aa18.75■□□□□ 0.59
PHRF1-205ENST00000533464 RNF139Q8WU17 664 aa18.75■□□□□ 0.59
PHRF1-205ENST00000533464 HEY1Q9Y5J3 304 aa18.75■□□□□ 0.59
PHRF1-205ENST00000533464 PREX1Q8TCU6 1659 aa18.75■□□□□ 0.59
PHRF1-205ENST00000533464 ARHGEF37A1IGU5 675 aa18.75■□□□□ 0.59
PHRF1-205ENST00000533464 MMEP08473 750 aa18.75■□□□□ 0.59
PHRF1-205ENST00000533464 ARL4CP56559 192 aa18.75■□□□□ 0.59
PHRF1-205ENST00000533464 ASNSD1Q9NWL6 643 aa18.75■□□□□ 0.59
PHRF1-205ENST00000533464 LRFN2Q9ULH4 789 aa18.75■□□□□ 0.59
PHRF1-205ENST00000533464 PFASO15067 1338 aa18.75■□□□□ 0.59
PHRF1-205ENST00000533464 ESYT2A0FGR8 921 aa18.75■□□□□ 0.59
PHRF1-205ENST00000533464 TOM1L1O75674 476 aa18.75■□□□□ 0.59
PHRF1-205ENST00000533464 PSMC1P62191 440 aaKnown RBP18.75■□□□□ 0.59
PHRF1-205ENST00000533464 IRX4P78413 519 aa18.75■□□□□ 0.59
PHRF1-205ENST00000533464 FAM151AQ8WW52 585 aa18.75■□□□□ 0.59
PHRF1-205ENST00000533464 HSPBP1Q9NZL4 362 aa18.75■□□□□ 0.59
PHRF1-205ENST00000533464 AMACRQ9UHK6 382 aa18.75■□□□□ 0.59
PHRF1-205ENST00000533464 MYL3P08590 195 aa18.74■□□□□ 0.59
PHRF1-205ENST00000533464 MAGOHP61326 146 aaKnown RBP18.74■□□□□ 0.59
PHRF1-205ENST00000533464 EDRF1Q3B7T1 1238 aa18.74■□□□□ 0.59
PHRF1-205ENST00000533464 ARL13BQ3SXY8 428 aa18.74■□□□□ 0.59
PHRF1-205ENST00000533464 BZW1Q7L1Q6 419 aaKnown RBP18.74■□□□□ 0.59
PHRF1-205ENST00000533464 ELAC2Q9BQ52 826 aaKnown RBP18.74■□□□□ 0.59
PHRF1-205ENST00000533464 LRRC1Q9BTT6 524 aa18.74■□□□□ 0.59
PHRF1-205ENST00000533464 TEX13BQ9BXU2 312 aa18.74■□□□□ 0.59
PHRF1-205ENST00000533464 CPSF3Q9UKF6 684 aaKnown RBP18.74■□□□□ 0.59
PHRF1-205ENST00000533464 ANKRD65E5RJM6 399 aa18.74■□□□□ 0.59
PHRF1-205ENST00000533464 FXR2P51116 673 aaKnown RBP eCLIP18.74■□□□□ 0.594e-7■■■■□ 23.2
PHRF1-205ENST00000533464 PMS2P54278 862 aa18.74■□□□□ 0.59
PHRF1-205ENST00000533464 MMEL1Q495T6 779 aa18.74■□□□□ 0.59
PHRF1-205ENST00000533464 TWF2Q6IBS0 349 aaKnown RBP18.74■□□□□ 0.59
PHRF1-205ENST00000533464 WNT8AQ9H1J5 351 aa18.74■□□□□ 0.59
PHRF1-205ENST00000533464 IQANK1A0A1B0GTG1 560 aa18.74■□□□□ 0.59
PHRF1-205ENST00000533464 KIAA1841Q6NSI8 718 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms