RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 FBLN5Q9UBX5 448 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 FBXL7Q9UJT9 491 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 DSEQ9UL01 958 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 MRPL11Q9Y3B7 192 aaKnown RBP6.09□□□□□ -1.43
CD44-236ENST00000533222 TBX22Q9Y458 520 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 SHROOM2Q13796 1616 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 NCOA1Q15788 1441 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 SH3TC1Q8TE82 1336 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 TRBV23-1A0A0A0MS06 115 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 NPHP3-ACAD11A0A0J9YXS1 232 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 LRRC10BA6NIK2 292 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 SLU7O95391 586 aaKnown RBP6.08□□□□□ -1.44
CD44-236ENST00000533222 PAPLNO95428 1278 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 TSPY4P0CV99 314 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 TSPY10P0CW01 314 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 CD9P21926 228 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 RTP1P59025 263 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 IGBP1P78318 339 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 PPIDQ08752 370 aaKnown RBP6.08□□□□□ -1.44
CD44-236ENST00000533222 MAP4K2Q12851 820 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 IKQ13123 557 aaPredicted RBP6.08□□□□□ -1.44
CD44-236ENST00000533222 BTG3Q14201 252 aaPredicted RBP6.08□□□□□ -1.44
CD44-236ENST00000533222 KCTD2Q14681 263 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 COG2Q14746 738 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 CCDC184Q52MB2 194 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 FBXO38Q6PIJ6 1188 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 TMCO3Q6UWJ1 677 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 CCBE1Q6UXH8 406 aaPredicted RBP6.08□□□□□ -1.44
CD44-236ENST00000533222 USP53Q70EK8 1073 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 ARMC9Q7Z3E5 817 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.08□□□□□ -1.44
CD44-236ENST00000533222 TMEM110Q86TL2 294 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 NOP9Q86U38 636 aaKnown RBP6.08□□□□□ -1.44
CD44-236ENST00000533222 DZIP1Q86YF9 867 aaKnown RBP6.08□□□□□ -1.44
CD44-236ENST00000533222 ANKS4BQ8N8V4 417 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 MSANTD4Q8NCY6 345 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 FLAD1Q8NFF5 587 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 TRIM58Q8NG06 486 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 IRGQQ8WZA9 623 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 SMARCE1Q969G3 411 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 ZKSCAN4Q969J2 545 aaPredicted RBP6.08□□□□□ -1.44
CD44-236ENST00000533222 SYTL4Q96C24 671 aaPredicted RBP6.08□□□□□ -1.44
CD44-236ENST00000533222 GCC1Q96CN9 775 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 ZMAT2Q96NC0 199 aaKnown RBP6.08□□□□□ -1.44
CD44-236ENST00000533222 CDC6Q99741 560 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 GORASP1Q9BQQ3 440 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 RNF32Q9H0A6 362 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 CCDC68Q9H2F9 335 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 ZWILCHQ9H900 591 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 ZNF304Q9HCX3 659 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 KLHL42Q9P2K6 505 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 IMPACTQ9P2X3 320 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 TNFRSF10DQ9UBN6 386 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 TUBGCP4Q9UGJ1 667 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 ADAM21Q9UKJ8 722 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 CFAP45Q9UL16 551 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 CARD8Q9Y2G2 431 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 PCDHB2Q9Y5E7 798 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 PRDM15P57071 1507 aaPredicted RBP6.08□□□□□ -1.44
CD44-236ENST00000533222 RTEL1-TNFRSF6BF6WH68 1400 aa6.08□□□□□ -1.44
CD44-236ENST00000533222 ANKRD30AQ9BXX3 1397 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 KIF7Q2M1P5 1343 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 THOC2Q8NI27 1593 aaKnown RBP6.07□□□□□ -1.44
CD44-236ENST00000533222 REREQ9P2R6 1566 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 H0YC42 278 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 MSCO60682 206 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 PPP1R11O60927 126 aaPredicted RBP6.07□□□□□ -1.44
CD44-236ENST00000533222 ATP6V1G1O75348 118 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 LUC7L3O95232 432 aaKnown RBP6.07□□□□□ -1.44
CD44-236ENST00000533222 EIF2S1P05198 315 aaKnown RBP6.07□□□□□ -1.44
CD44-236ENST00000533222 C6orf222P0C671 652 aaPredicted RBP6.07□□□□□ -1.44
CD44-236ENST00000533222 PAMP19021 973 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 ENDOUP21128 410 aaKnown RBP6.07□□□□□ -1.44
CD44-236ENST00000533222 CNGA1P29973 690 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 ARHGAP25P42331 645 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 KIR2DL1P43626 348 aaPredicted RBP6.07□□□□□ -1.44
CD44-236ENST00000533222 KIR2DL2P43627 348 aaPredicted RBP6.07□□□□□ -1.44
CD44-236ENST00000533222 PSMC4P43686 418 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 TPD52P55327 224 aaPredicted RBP6.07□□□□□ -1.44
CD44-236ENST00000533222 NLRP5P59047 1200 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 AGAP9Q5VTM2 703 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 ADALQ6DHV7 355 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 THOC7Q6I9Y2 204 aaKnown RBP6.07□□□□□ -1.44
CD44-236ENST00000533222 NCAPH2Q6IBW4 605 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 KCNT2Q6UVM3 1135 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 CYP2R1Q6VVX0 501 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 BEND5Q7L4P6 421 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 SIRT2Q8IXJ6 389 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 THEMISQ8N1K5 641 aaPredicted RBP6.07□□□□□ -1.44
CD44-236ENST00000533222 TRIML1Q8N9V2 468 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 ZBTB8BQ8NAP8 495 aaPredicted RBP6.07□□□□□ -1.44
CD44-236ENST00000533222 NEK11Q8NG66 645 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 CCHCR1Q8TD31 782 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 PARD3BQ8TEW8 1205 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 MYLIPQ8WY64 445 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 CTNNBL1Q8WYA6 563 aaPredicted RBP6.07□□□□□ -1.44
CD44-236ENST00000533222 KCTD13Q8WZ19 329 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 KISS1RQ969F8 398 aaPredicted RBP6.07□□□□□ -1.44
CD44-236ENST00000533222 SHISA4Q96DD7 197 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 VMP1Q96GC9 406 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms