RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 RAB27AP51159 221 aa16.65■□□□□ 0.26
CPSF1-208ENST00000532560 SLC12A3P55017 1021 aa16.65■□□□□ 0.26
CPSF1-208ENST00000532560 KARSQ15046 597 aaKnown RBP16.65■□□□□ 0.26
CPSF1-208ENST00000532560 STK38Q15208 465 aa16.65■□□□□ 0.26
CPSF1-208ENST00000532560 ATL3Q6DD88 541 aa16.65■□□□□ 0.26
CPSF1-208ENST00000532560 TWF2Q6IBS0 349 aaKnown RBP16.65■□□□□ 0.26
CPSF1-208ENST00000532560 RINT1Q6NUQ1 792 aa16.65■□□□□ 0.26
CPSF1-208ENST00000532560 C1orf186Q6ZWK4 172 aa16.65■□□□□ 0.26
CPSF1-208ENST00000532560 ECHDC2Q86YB7 292 aa16.65■□□□□ 0.26
CPSF1-208ENST00000532560 FIBCD1Q8N539 461 aa16.65■□□□□ 0.26
CPSF1-208ENST00000532560 SYT2Q8N9I0 419 aaPredicted RBP16.65■□□□□ 0.26
CPSF1-208ENST00000532560 ARNTL2Q8WYA1 636 aa16.65■□□□□ 0.26
CPSF1-208ENST00000532560 BSNDQ8WZ55 320 aa16.65■□□□□ 0.26
CPSF1-208ENST00000532560 SYMPKQ92797 1274 aaKnown RBP16.65■□□□□ 0.26
CPSF1-208ENST00000532560 SAMD11Q96NU1 681 aa16.65■□□□□ 0.26
CPSF1-208ENST00000532560 GAS2L1Q99501 681 aaPredicted RBP16.65■□□□□ 0.26
CPSF1-208ENST00000532560 SPTLC2O15270 562 aa16.64■□□□□ 0.25
CPSF1-208ENST00000532560 HOXA2O43364 376 aa16.64■□□□□ 0.25
CPSF1-208ENST00000532560 TSPAN1O60635 241 aa16.64■□□□□ 0.25
CPSF1-208ENST00000532560 PPP6R2O75170 966 aa16.64■□□□□ 0.25
CPSF1-208ENST00000532560 LINC00271P0C7V0 271 aa16.64■□□□□ 0.25
CPSF1-208ENST00000532560 SKIP12755 728 aa16.64■□□□□ 0.25
CPSF1-208ENST00000532560 FOSL2P15408 326 aa16.64■□□□□ 0.25
CPSF1-208ENST00000532560 HOXA11P31270 313 aaPredicted RBP16.64■□□□□ 0.25
CPSF1-208ENST00000532560 BTG3Q14201 252 aaPredicted RBP16.64■□□□□ 0.25
CPSF1-208ENST00000532560 ZNF598Q86UK7 904 aaKnown RBP16.64■□□□□ 0.25
CPSF1-208ENST00000532560 ZBTB8OSQ8IWT0 167 aa16.64■□□□□ 0.25
CPSF1-208ENST00000532560 RASSF8Q8NHQ8 419 aa16.64■□□□□ 0.25
CPSF1-208ENST00000532560 LRRC15Q8TF66 581 aa16.64■□□□□ 0.25
CPSF1-208ENST00000532560 CLP1Q92989 425 aaKnown RBP16.64■□□□□ 0.25
CPSF1-208ENST00000532560 CCDC51Q96ER9 411 aa16.64■□□□□ 0.25
CPSF1-208ENST00000532560 EPSTI1Q96J88 318 aa16.64■□□□□ 0.25
CPSF1-208ENST00000532560 IFT74Q96LB3 600 aa16.64■□□□□ 0.25
CPSF1-208ENST00000532560 DRC1Q96MC2 740 aa16.64■□□□□ 0.25
CPSF1-208ENST00000532560 CLIC6Q96NY7 704 aa16.64■□□□□ 0.25
CPSF1-208ENST00000532560 PLIN2Q99541 437 aa16.64■□□□□ 0.25
CPSF1-208ENST00000532560 C2orf40Q9H1Z8 148 aa16.64■□□□□ 0.25
CPSF1-208ENST00000532560 CERS4Q9HA82 394 aa16.64■□□□□ 0.25
CPSF1-208ENST00000532560 RWDD3Q9Y3V2 267 aa16.64■□□□□ 0.25
CPSF1-208ENST00000532560 FNDC1Q4ZHG4 1894 aaPredicted RBP16.64■□□□□ 0.25
CPSF1-208ENST00000532560 NLRC5Q86WI3 1866 aa16.64■□□□□ 0.25
CPSF1-208ENST00000532560 MYO9BQ13459 2157 aa16.63■□□□□ 0.25
CPSF1-208ENST00000532560 HIP1RO75146 1068 aa16.63■□□□□ 0.25
CPSF1-208ENST00000532560 EOMESO95936 686 aa16.63■□□□□ 0.25
CPSF1-208ENST00000532560 SSBP05455 408 aaKnown RBP eCLIP16.63■□□□□ 0.25
CPSF1-208ENST00000532560 ATF7P17544 494 aaPredicted RBP16.63■□□□□ 0.25
CPSF1-208ENST00000532560 IBSPP21815 317 aaPredicted RBP16.63■□□□□ 0.25
CPSF1-208ENST00000532560 TXLNAP40222 546 aa16.63■□□□□ 0.25
CPSF1-208ENST00000532560 GATMP50440 423 aa16.63■□□□□ 0.25
CPSF1-208ENST00000532560 MAPK7Q13164 816 aa16.63■□□□□ 0.25
CPSF1-208ENST00000532560 AMHR2Q16671 573 aa16.63■□□□□ 0.25
CPSF1-208ENST00000532560 FAM187BQ17R55 369 aa16.63■□□□□ 0.25
CPSF1-208ENST00000532560 SPECC1Q5M775 1068 aa16.63■□□□□ 0.25
CPSF1-208ENST00000532560 NOTUMQ6P988 496 aa16.63■□□□□ 0.25
CPSF1-208ENST00000532560 PPP4R3CPQ6ZMV5 832 aa16.63■□□□□ 0.25
CPSF1-208ENST00000532560 USP49Q70CQ1 688 aa16.63■□□□□ 0.25
CPSF1-208ENST00000532560 DAW1Q8N136 415 aa16.63■□□□□ 0.25
CPSF1-208ENST00000532560 PRIMPOLQ96LW4 560 aa16.63■□□□□ 0.25
CPSF1-208ENST00000532560 C17orf80Q9BSJ5 609 aa16.63■□□□□ 0.25
CPSF1-208ENST00000532560 BLOC1S4Q9NUP1 217 aa16.63■□□□□ 0.25
CPSF1-208ENST00000532560 FAM105AQ9NUU6 356 aa16.63■□□□□ 0.25
CPSF1-208ENST00000532560 RNF19AQ9NV58 838 aa16.63■□□□□ 0.25
CPSF1-208ENST00000532560 PRMT7Q9NVM4 692 aaPredicted RBP16.63■□□□□ 0.25
CPSF1-208ENST00000532560 TFIP11Q9UBB9 837 aaKnown RBP16.63■□□□□ 0.25
CPSF1-208ENST00000532560 ZNF623O75123 536 aa16.62■□□□□ 0.25
CPSF1-208ENST00000532560 FGFR1P11362 822 aa16.62■□□□□ 0.25
CPSF1-208ENST00000532560 NCBP1Q09161 790 aaKnown RBP16.62■□□□□ 0.25
CPSF1-208ENST00000532560 DMP1Q13316 513 aaPredicted RBP16.62■□□□□ 0.25
CPSF1-208ENST00000532560 ADGRE1Q14246 886 aa16.62■□□□□ 0.25
CPSF1-208ENST00000532560 PAN2Q504Q3 1202 aaKnown RBP16.62■□□□□ 0.25
CPSF1-208ENST00000532560 EPC2Q52LR7 807 aa16.62■□□□□ 0.25
CPSF1-208ENST00000532560 TMEM192Q8IY95 271 aa16.62■□□□□ 0.25
CPSF1-208ENST00000532560 FBXO22Q8NEZ5 403 aa16.62■□□□□ 0.25
CPSF1-208ENST00000532560 DEPTORQ8TB45 409 aa16.62■□□□□ 0.25
CPSF1-208ENST00000532560 KCNG4Q8TDN1 519 aa16.62■□□□□ 0.25
CPSF1-208ENST00000532560 RSPH1Q8WYR4 309 aa16.62■□□□□ 0.25
CPSF1-208ENST00000532560 RAD54LQ92698 747 aa16.62■□□□□ 0.25
CPSF1-208ENST00000532560 TMEM117Q9H0C3 514 aa16.62■□□□□ 0.25
CPSF1-208ENST00000532560 CCDC113Q9H0I3 377 aa16.62■□□□□ 0.25
CPSF1-208ENST00000532560 C17orf75Q9HAS0 396 aa16.62■□□□□ 0.25
CPSF1-208ENST00000532560 STK17AQ9UEE5 414 aa16.62■□□□□ 0.25
CPSF1-208ENST00000532560 CCDC39Q9UFE4 941 aa16.62■□□□□ 0.25
CPSF1-208ENST00000532560 MTUS1Q9ULD2 1270 aa16.62■□□□□ 0.25
CPSF1-208ENST00000532560 ZDHHC9Q9Y397 364 aa16.62■□□□□ 0.25
CPSF1-208ENST00000532560 MRPL42Q9Y6G3 142 aaKnown RBP16.62■□□□□ 0.25
CPSF1-208ENST00000532560 CDH23Q9H251 3354 aa16.62■□□□□ 0.25
CPSF1-208ENST00000532560 CNTNAP2Q9UHC6 1331 aa16.62■□□□□ 0.25
CPSF1-208ENST00000532560 KIAA1671Q9BY89 1806 aa16.61■□□□□ 0.25
CPSF1-208ENST00000532560 TBKBP1A7MCY6 615 aa16.61■□□□□ 0.25
CPSF1-208ENST00000532560 C5orf67F2Z3F1 127 aa16.61■□□□□ 0.25
CPSF1-208ENST00000532560 LPXNO60711 386 aa16.61■□□□□ 0.25
CPSF1-208ENST00000532560 ARF4P18085 180 aaPredicted RBP16.61■□□□□ 0.25
CPSF1-208ENST00000532560 POU3F3P20264 500 aaPredicted RBP16.61■□□□□ 0.25
CPSF1-208ENST00000532560 EFNA5P52803 228 aa16.61■□□□□ 0.25
CPSF1-208ENST00000532560 FOXD4L6Q3SYB3 417 aaPredicted RBP16.61■□□□□ 0.25
CPSF1-208ENST00000532560 UBXN11Q5T124 520 aa16.61■□□□□ 0.25
CPSF1-208ENST00000532560 FOXD4L3Q6VB84 417 aaPredicted RBP16.61■□□□□ 0.25
CPSF1-208ENST00000532560 GDPD5Q8WTR4 605 aa16.61■□□□□ 0.25
CPSF1-208ENST00000532560 LARP4BQ92615 738 aaKnown RBP16.61■□□□□ 0.25
CPSF1-208ENST00000532560 CASD1Q96PB1 797 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms