RNA–Protein interactions for RNA: ENST00000532331.5

PTPRK-221, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRK, Length 5,757 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-221ENST00000532331 NUF2Q9BZD4 464 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 EPB41L4AQ9HCS5 686 aaPredicted RBP12.11□□□□□ -0.47
PTPRK-221ENST00000532331 GPRC5DQ9NZD1 345 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 MROH2AA6NES4 1674 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 PDS5AQ29RF7 1337 aaKnown RBP12.11□□□□□ -0.47
PTPRK-221ENST00000532331 NEMP1O14524 444 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 SERPING1P05155 500 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 TBXAS1P24557 533 aaPredicted RBP12.11□□□□□ -0.47
PTPRK-221ENST00000532331 GCLMP48507 274 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 PRKCEQ02156 737 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 EFCAB12Q6NXP0 572 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 LMNTD2Q8IXW0 634 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 ZNF579Q8NAF0 562 aaKnown RBP12.11□□□□□ -0.47
PTPRK-221ENST00000532331 GPRASP2Q96D09 838 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 RTFDC1Q9BY42 306 aaPredicted RBP12.11□□□□□ -0.47
PTPRK-221ENST00000532331 PTPN22Q9Y2R2 807 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 PRRG1O14668 218 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 CDO1Q16878 200 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 DUOXA2Q1HG44 320 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 SLC38A7Q9NVC3 462 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 RGL1Q9NZL6 768 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 NRBP1Q9UHY1 535 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 MOSPD1Q9UJG1 213 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 NR2E3Q9Y5X4 410 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 TBX3O15119 743 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 S100BP04271 92 aaPredicted RBP12.11□□□□□ -0.47
PTPRK-221ENST00000532331 HOXA10P31260 410 aaPredicted RBP12.11□□□□□ -0.47
PTPRK-221ENST00000532331 HERVK_113P62684 666 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 GNGT1P63211 74 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 EMC2Q15006 297 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 KNOP1Q1ED39 458 aaKnown RBP12.11□□□□□ -0.47
PTPRK-221ENST00000532331 PHLDB2Q86SQ0 1253 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 NDST4Q9H3R1 872 aa12.11□□□□□ -0.47
PTPRK-221ENST00000532331 MCF2LO15068 1137 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 KPNA6O60684 536 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 SKIP12755 728 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 PPATQ06203 517 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 SF3A3Q12874 501 aaKnown RBP eCLIP12.1□□□□□ -0.471e-6■■■■□ 21.5
PTPRK-221ENST00000532331 NOGQ13253 232 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 RESP18Q5W5W9 173 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 TMEM35BQ8NCS4 154 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 UHMK1Q8TAS1 419 aaKnown RBP12.1□□□□□ -0.47
PTPRK-221ENST00000532331 SAAL1Q96ER3 474 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 TNIP3Q96KP6 325 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 SYT17Q9BSW7 474 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 NGRNQ9NPE2 291 aaKnown RBP12.1□□□□□ -0.47
PTPRK-221ENST00000532331 ENC1O14682 589 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 GSTA1P08263 222 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 GSTA2P09210 222 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 TCF7P36402 384 aaPredicted RBP12.1□□□□□ -0.47
PTPRK-221ENST00000532331 TSNAXIP1Q2TAA8 658 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 C3orf67Q6ZVT6 689 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 TADA2BQ86TJ2 420 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 HMX1Q9NP08 348 aaPredicted RBP12.1□□□□□ -0.47
PTPRK-221ENST00000532331 LRRC4BQ9NT99 713 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 JRKLQ9Y4A0 524 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 PXDNQ92626 1479 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 ADORA2BP29275 332 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 VAMP7P51809 220 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 KRT33BQ14525 404 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 SGO2Q562F6 1265 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 GAS2L3Q86XJ1 694 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 SH3TC2Q8TF17 1288 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 RABGGTAQ92696 567 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 RNF208Q9H0X6 261 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 PPP1R9AQ9ULJ8 1098 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 DAAM1Q9Y4D1 1078 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 DDTLA6NHG4 134 aaPredicted RBP12.1□□□□□ -0.47
PTPRK-221ENST00000532331 PGRMC1O00264 195 aaKnown RBP12.1□□□□□ -0.47
PTPRK-221ENST00000532331 KIAA0391O15091 583 aaKnown RBP12.1□□□□□ -0.47
PTPRK-221ENST00000532331 SAT1P21673 171 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 GRIK1P39086 918 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 OR1G1P47890 313 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 NXNQ6DKJ4 435 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 TMEM270Q6UE05 265 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 TRIM62Q9BVG3 475 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 TRPC7Q9HCX4 862 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 PYCARDQ9ULZ3 195 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 FNDC3AQ9Y2H6 1198 aaKnown RBP12.1□□□□□ -0.47
PTPRK-221ENST00000532331 SCINQ9Y6U3 715 aa12.1□□□□□ -0.47
PTPRK-221ENST00000532331 INHBAP08476 426 aa12.09□□□□□ -0.47
PTPRK-221ENST00000532331 KCNA4P22459 653 aa12.09□□□□□ -0.47
PTPRK-221ENST00000532331 SMARCA1P28370 1054 aa12.09□□□□□ -0.47
PTPRK-221ENST00000532331 ALDH7A1P49419 539 aaKnown RBP12.09□□□□□ -0.47
PTPRK-221ENST00000532331 FKBP1AP62942 108 aaKnown RBP12.09□□□□□ -0.47
PTPRK-221ENST00000532331 VSTM4Q8IW00 320 aa12.09□□□□□ -0.47
PTPRK-221ENST00000532331 TMX2Q9Y320 296 aa12.09□□□□□ -0.47
PTPRK-221ENST00000532331 VWDEQ8N2E2 1590 aa12.09□□□□□ -0.47
PTPRK-221ENST00000532331 M0QYV0 167 aa12.09□□□□□ -0.47
PTPRK-221ENST00000532331 BUB1BO60566 1050 aaPredicted RBP12.09□□□□□ -0.47
PTPRK-221ENST00000532331 HSPA6P17066 643 aa12.09□□□□□ -0.47
PTPRK-221ENST00000532331 EIF4A3P38919 411 aaKnown RBP12.09□□□□□ -0.47
PTPRK-221ENST00000532331 TCP11X2Q5H9J9 407 aa12.09□□□□□ -0.47
PTPRK-221ENST00000532331 DACT2Q5SW24 774 aa12.09□□□□□ -0.47
PTPRK-221ENST00000532331 ARHGEF18Q6ZSZ5 1173 aa12.09□□□□□ -0.47
PTPRK-221ENST00000532331 DNAAF3Q8N9W5 541 aa12.09□□□□□ -0.47
PTPRK-221ENST00000532331 NHEJ1Q9H9Q4 299 aaPredicted RBP12.09□□□□□ -0.47
PTPRK-221ENST00000532331 MED4Q9NPJ6 270 aa12.09□□□□□ -0.47
PTPRK-221ENST00000532331 RNF14Q9UBS8 474 aa12.09□□□□□ -0.47
PTPRK-221ENST00000532331 STRNO43815 780 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms