RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 YWHABP31946 246 aaKnown RBP16.47■□□□□ 0.23
VPS28-215ENST00000531924 XKR9Q5GH70 373 aa16.47■□□□□ 0.23
VPS28-215ENST00000531924 NOMO2Q5JPE7 1267 aa16.47■□□□□ 0.23
VPS28-215ENST00000531924 ANKRD54Q6NXT1 300 aa16.47■□□□□ 0.23
VPS28-215ENST00000531924 SLC39A11Q8N1S5 342 aa16.47■□□□□ 0.23
VPS28-215ENST00000531924 NECAB1Q8N987 351 aa16.47■□□□□ 0.23
VPS28-215ENST00000531924 VN1R2Q8NFZ6 395 aa16.47■□□□□ 0.23
VPS28-215ENST00000531924 CASP10Q92851 521 aa16.47■□□□□ 0.23
VPS28-215ENST00000531924 LPPQ93052 612 aa16.47■□□□□ 0.23
VPS28-215ENST00000531924 TMEM143Q96AN5 459 aa16.47■□□□□ 0.23
VPS28-215ENST00000531924 MFSD14AQ96MC6 490 aa16.47■□□□□ 0.23
VPS28-215ENST00000531924 TRAIPQ9BWF2 469 aa16.47■□□□□ 0.23
VPS28-215ENST00000531924 APOL5Q9BWW9 433 aa16.47■□□□□ 0.23
VPS28-215ENST00000531924 ZSWIM4Q9H7M6 989 aa16.47■□□□□ 0.23
VPS28-215ENST00000531924 BMP2KQ9NSY1 1161 aaPredicted RBP16.47■□□□□ 0.23
VPS28-215ENST00000531924 FAM105AQ9NUU6 356 aa16.47■□□□□ 0.23
VPS28-215ENST00000531924 FNDC1Q4ZHG4 1894 aaPredicted RBP16.46■□□□□ 0.23
VPS28-215ENST00000531924 NT5C1B-RDH14C9J2C7 533 aa16.46■□□□□ 0.23
VPS28-215ENST00000531924 GAS2O43903 313 aaKnown RBP16.46■□□□□ 0.23
VPS28-215ENST00000531924 CXCL14O95715 111 aa16.46■□□□□ 0.23
VPS28-215ENST00000531924 ATF7P17544 494 aaPredicted RBP16.46■□□□□ 0.23
VPS28-215ENST00000531924 NCBP1Q09161 790 aaKnown RBP16.46■□□□□ 0.23
VPS28-215ENST00000531924 TPRNQ4KMQ1 711 aa16.46■□□□□ 0.23
VPS28-215ENST00000531924 CES5AQ6NT32 575 aa16.46■□□□□ 0.23
VPS28-215ENST00000531924 TMEM184AQ6ZMB5 413 aa16.46■□□□□ 0.23
VPS28-215ENST00000531924 POTEDQ86YR6 584 aa16.46■□□□□ 0.23
VPS28-215ENST00000531924 TPH2Q8IWU9 490 aa16.46■□□□□ 0.23
VPS28-215ENST00000531924 C4orf19Q8IY42 314 aa16.46■□□□□ 0.23
VPS28-215ENST00000531924 MRPL43Q8N983 215 aaKnown RBP16.46■□□□□ 0.23
VPS28-215ENST00000531924 EDAQ92838 391 aa16.46■□□□□ 0.23
VPS28-215ENST00000531924 HAS1Q92839 578 aa16.46■□□□□ 0.23
VPS28-215ENST00000531924 DYDC2Q96IM9 177 aa16.46■□□□□ 0.23
VPS28-215ENST00000531924 GBP3Q9H0R5 595 aa16.46■□□□□ 0.23
VPS28-215ENST00000531924 RGL1Q9NZL6 768 aa16.46■□□□□ 0.23
VPS28-215ENST00000531924 PCDHB2Q9Y5E7 798 aa16.46■□□□□ 0.23
VPS28-215ENST00000531924 LOC730098B7Z3J9 87 aa16.45■□□□□ 0.22
VPS28-215ENST00000531924 ASAP2O43150 1006 aa16.45■□□□□ 0.22
VPS28-215ENST00000531924 CTDNEP1O95476 244 aa16.45■□□□□ 0.22
VPS28-215ENST00000531924 CYP4A11Q02928 519 aa16.45■□□□□ 0.22
VPS28-215ENST00000531924 LAMTOR4Q0VGL1 99 aa16.45■□□□□ 0.22
VPS28-215ENST00000531924 NR5A1Q13285 461 aa16.45■□□□□ 0.22
VPS28-215ENST00000531924 CTTNQ14247 550 aaKnown RBP16.45■□□□□ 0.22
VPS28-215ENST00000531924 CBX2Q14781 532 aaPredicted RBP16.45■□□□□ 0.22
VPS28-215ENST00000531924 EMC2Q15006 297 aa16.45■□□□□ 0.22
VPS28-215ENST00000531924 SRGAP1Q7Z6B7 1085 aa16.45■□□□□ 0.22
VPS28-215ENST00000531924 ZBTB33Q86T24 672 aa16.45■□□□□ 0.22
VPS28-215ENST00000531924 VPS52Q8N1B4 723 aa16.45■□□□□ 0.22
VPS28-215ENST00000531924 ZNF579Q8NAF0 562 aaKnown RBP16.45■□□□□ 0.22
VPS28-215ENST00000531924 FAM193BQ96PV7 902 aaPredicted RBP16.45■□□□□ 0.22
VPS28-215ENST00000531924 DHX33Q9H6R0 707 aaKnown RBP16.45■□□□□ 0.22
VPS28-215ENST00000531924 AGPAT5Q9NUQ2 364 aa16.45■□□□□ 0.22
VPS28-215ENST00000531924 PCDHA12Q9UN75 941 aa16.45■□□□□ 0.22
VPS28-215ENST00000531924 PLXNA4Q9HCM2 1894 aa16.45■□□□□ 0.22
VPS28-215ENST00000531924 ATG2AQ2TAZ0 1938 aa16.45■□□□□ 0.22
VPS28-215ENST00000531924 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.44■□□□□ 0.22
VPS28-215ENST00000531924 C2orf71A6NGG8 1288 aa16.44■□□□□ 0.22
VPS28-215ENST00000531924 ZNF623O75123 536 aa16.44■□□□□ 0.22
VPS28-215ENST00000531924 ERLIN2O94905 339 aa16.44■□□□□ 0.22
VPS28-215ENST00000531924 NEK4P51957 841 aa16.44■□□□□ 0.22
VPS28-215ENST00000531924 FOSBP53539 338 aa16.44■□□□□ 0.22
VPS28-215ENST00000531924 GIT2Q14161 759 aa16.44■□□□□ 0.22
VPS28-215ENST00000531924 TFDP1Q14186 410 aa16.44■□□□□ 0.22
VPS28-215ENST00000531924 CALCRLQ16602 461 aa16.44■□□□□ 0.22
VPS28-215ENST00000531924 RNF149Q8NC42 400 aa16.44■□□□□ 0.22
VPS28-215ENST00000531924 GTF3C6Q969F1 213 aa16.44■□□□□ 0.22
VPS28-215ENST00000531924 MTRQ99707 1265 aa16.44■□□□□ 0.22
VPS28-215ENST00000531924 IFT122Q9HBG6 1241 aa16.44■□□□□ 0.22
VPS28-215ENST00000531924 TSHZ2Q9NRE2 1034 aa16.44■□□□□ 0.22
VPS28-215ENST00000531924 TBC1D13Q9NVG8 400 aa16.44■□□□□ 0.22
VPS28-215ENST00000531924 WRAP73Q9P2S5 460 aaPredicted RBP16.44■□□□□ 0.22
VPS28-215ENST00000531924 C5orf42Q9H799 3197 aa16.43■□□□□ 0.22
VPS28-215ENST00000531924 SPDYE4A6NLX3 237 aa16.43■□□□□ 0.22
VPS28-215ENST00000531924 OFD1O75665 1012 aa16.43■□□□□ 0.22
VPS28-215ENST00000531924 MXD4Q14582 209 aaPredicted RBP16.43■□□□□ 0.22
VPS28-215ENST00000531924 SAFBQ15424 915 aaKnown RBP eCLIP16.43■□□□□ 0.22
VPS28-215ENST00000531924 ME3Q16798 604 aa16.43■□□□□ 0.22
VPS28-215ENST00000531924 HFE2Q6ZVN8 426 aa16.43■□□□□ 0.22
VPS28-215ENST00000531924 SUSD6Q92537 303 aa16.43■□□□□ 0.22
VPS28-215ENST00000531924 KANSL3Q9P2N6 904 aa16.43■□□□□ 0.22
VPS28-215ENST00000531924 STK39Q9UEW8 545 aa16.43■□□□□ 0.22
VPS28-215ENST00000531924 NR2E1Q9Y466 385 aa16.43■□□□□ 0.22
VPS28-215ENST00000531924 HCFC2Q9Y5Z7 792 aa16.43■□□□□ 0.22
VPS28-215ENST00000531924 FAM205CA6NFA0 338 aa16.42■□□□□ 0.22
VPS28-215ENST00000531924 TMEM221A6NGB7 291 aa16.42■□□□□ 0.22
VPS28-215ENST00000531924 M0R296 226 aa16.42■□□□□ 0.22
VPS28-215ENST00000531924 NEMFO60524 1076 aa16.42■□□□□ 0.22
VPS28-215ENST00000531924 CLASP2O75122 1294 aaKnown RBP16.42■□□□□ 0.22
VPS28-215ENST00000531924 GALTP07902 379 aa16.42■□□□□ 0.22
VPS28-215ENST00000531924 TXKP42681 527 aa16.42■□□□□ 0.22
VPS28-215ENST00000531924 ITIH3Q06033 890 aa16.42■□□□□ 0.22
VPS28-215ENST00000531924 KCNC3Q14003 757 aa16.42■□□□□ 0.22
VPS28-215ENST00000531924 EARS2Q5JPH6 523 aaKnown RBP16.42■□□□□ 0.22
VPS28-215ENST00000531924 SYCE2Q6PIF2 218 aa16.42■□□□□ 0.22
VPS28-215ENST00000531924 TRIM67Q6ZTA4 783 aa16.42■□□□□ 0.22
VPS28-215ENST00000531924 DDX53Q86TM3 631 aaKnown RBP16.42■□□□□ 0.22
VPS28-215ENST00000531924 FERMT3Q86UX7 667 aa16.42■□□□□ 0.22
VPS28-215ENST00000531924 DIS3L2Q8IYB7 885 aaKnown RBP16.42■□□□□ 0.22
VPS28-215ENST00000531924 CNNM3Q8NE01 707 aa16.42■□□□□ 0.22
VPS28-215ENST00000531924 PBXIP1Q96AQ6 731 aa16.42■□□□□ 0.22
VPS28-215ENST00000531924 IGSF21Q96ID5 467 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms