RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 DDX12PQ92771 950 aa16■□□□□ 0.15
CPSF1-206ENST00000531480 ZNF668Q96K58 619 aaPredicted RBP16■□□□□ 0.15
CPSF1-206ENST00000531480 TRAIPQ9BWF2 469 aa16■□□□□ 0.15
CPSF1-206ENST00000531480 CCDC113Q9H0I3 377 aa16■□□□□ 0.15
CPSF1-206ENST00000531480 MTIF3Q9H2K0 278 aaKnown RBP16■□□□□ 0.15
CPSF1-206ENST00000531480 FZD8Q9H461 694 aa16■□□□□ 0.15
CPSF1-206ENST00000531480 GOLPH3LQ9H4A5 285 aa16■□□□□ 0.15
CPSF1-206ENST00000531480 CHST12Q9NRB3 414 aa16■□□□□ 0.15
CPSF1-206ENST00000531480 KCNG1Q9UIX4 513 aa16■□□□□ 0.15
CPSF1-206ENST00000531480 GBF1Q92538 1859 aa15.99■□□□□ 0.15
CPSF1-206ENST00000531480 NPHP3-ACAD11A0A0J9YXS1 232 aa15.99■□□□□ 0.15
CPSF1-206ENST00000531480 GOLGA6L22H0YM25 854 aa15.99■□□□□ 0.15
CPSF1-206ENST00000531480 MGEA5O60502 916 aa15.99■□□□□ 0.15
CPSF1-206ENST00000531480 HOXA11P31270 313 aaPredicted RBP15.99■□□□□ 0.15
CPSF1-206ENST00000531480 NDUFA8P51970 172 aa15.99■□□□□ 0.15
CPSF1-206ENST00000531480 CSPP1Q1MSJ5 1256 aa15.99■□□□□ 0.15
CPSF1-206ENST00000531480 ENGASEQ8NFI3 743 aa15.99■□□□□ 0.15
CPSF1-206ENST00000531480 DHX58Q96C10 678 aa15.99■□□□□ 0.15
CPSF1-206ENST00000531480 IFT74Q96LB3 600 aa15.99■□□□□ 0.15
CPSF1-206ENST00000531480 RNPC3Q96LT9 517 aaKnown RBP15.99■□□□□ 0.15
CPSF1-206ENST00000531480 PRIMPOLQ96LW4 560 aa15.99■□□□□ 0.15
CPSF1-206ENST00000531480 SCLT1Q96NL6 688 aa15.99■□□□□ 0.15
CPSF1-206ENST00000531480 GBP4Q96PP9 640 aa15.99■□□□□ 0.15
CPSF1-206ENST00000531480 FIZ1Q96SL8 496 aa15.99■□□□□ 0.15
CPSF1-206ENST00000531480 LRRC27Q9C0I9 530 aa15.99■□□□□ 0.15
CPSF1-206ENST00000531480 C2orf40Q9H1Z8 148 aa15.99■□□□□ 0.15
CPSF1-206ENST00000531480 POLD4Q9HCU8 107 aa15.99■□□□□ 0.15
CPSF1-206ENST00000531480 AGPAT5Q9NUQ2 364 aa15.99■□□□□ 0.15
CPSF1-206ENST00000531480 COL4A6Q14031 1691 aa15.99■□□□□ 0.15
CPSF1-206ENST00000531480 ENPP3O14638 875 aa15.98■□□□□ 0.15
CPSF1-206ENST00000531480 CSDE1O75534 798 aaKnown RBP15.98■□□□□ 0.15
CPSF1-206ENST00000531480 SCP2P22307 547 aa15.98■□□□□ 0.15
CPSF1-206ENST00000531480 EFNA5P52803 228 aa15.98■□□□□ 0.15
CPSF1-206ENST00000531480 FAM189BP81408 668 aa15.98■□□□□ 0.15
CPSF1-206ENST00000531480 NFX1Q12986 1120 aaKnown RBP15.98■□□□□ 0.15
CPSF1-206ENST00000531480 DMP1Q13316 513 aaPredicted RBP15.98■□□□□ 0.15
CPSF1-206ENST00000531480 SNW1Q13573 536 aaKnown RBP15.98■□□□□ 0.15
CPSF1-206ENST00000531480 DHX8Q14562 1220 aaKnown RBP15.98■□□□□ 0.15
CPSF1-206ENST00000531480 FMR1NBQ8N0W7 255 aaPredicted RBP15.98■□□□□ 0.15
CPSF1-206ENST00000531480 FSIP1Q8NA03 581 aa15.98■□□□□ 0.15
CPSF1-206ENST00000531480 SLC9A7Q96T83 725 aa15.98■□□□□ 0.15
CPSF1-206ENST00000531480 C7orf25Q9BPX7 421 aa15.98■□□□□ 0.15
CPSF1-206ENST00000531480 TRIM9Q9C026 710 aa15.98■□□□□ 0.15
CPSF1-206ENST00000531480 ST6GALNAC4Q9H4F1 302 aa15.98■□□□□ 0.15
CPSF1-206ENST00000531480 TMEM134Q9H6X4 195 aa15.98■□□□□ 0.15
CPSF1-206ENST00000531480 PARVGQ9HBI0 331 aa15.98■□□□□ 0.15
CPSF1-206ENST00000531480 RGS18Q9NS28 235 aa15.98■□□□□ 0.15
CPSF1-206ENST00000531480 LARSQ9P2J5 1176 aaKnown RBP15.98■□□□□ 0.15
CPSF1-206ENST00000531480 PHLPP2Q6ZVD8 1323 aa15.97■□□□□ 0.15
CPSF1-206ENST00000531480 LRRIQ4A6NIV6 560 aa15.97■□□□□ 0.15
CPSF1-206ENST00000531480 C9IYK1 514 aa15.97■□□□□ 0.15
CPSF1-206ENST00000531480 MAPTP10636 758 aaKnown RBP15.97■□□□□ 0.15
CPSF1-206ENST00000531480 FGFR4P22455 802 aa15.97■□□□□ 0.15
CPSF1-206ENST00000531480 AXLP30530 894 aa15.97■□□□□ 0.15
CPSF1-206ENST00000531480 SYKP43405 635 aa15.97■□□□□ 0.15
CPSF1-206ENST00000531480 NCKAP1LP55160 1127 aa15.97■□□□□ 0.15
CPSF1-206ENST00000531480 PEX3P56589 373 aa15.97■□□□□ 0.15
CPSF1-206ENST00000531480 AMPD3Q01432 767 aa15.97■□□□□ 0.15
CPSF1-206ENST00000531480 RAD51AP2Q09MP3 1159 aa15.97■□□□□ 0.15
CPSF1-206ENST00000531480 LONRF3Q496Y0 759 aa15.97■□□□□ 0.15
CPSF1-206ENST00000531480 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.97■□□□□ 0.15
CPSF1-206ENST00000531480 Q7L0L9 218 aa15.97■□□□□ 0.15
CPSF1-206ENST00000531480 TMEM161BQ8NDZ6 487 aa15.97■□□□□ 0.15
CPSF1-206ENST00000531480 TOP1MTQ969P6 601 aa15.97■□□□□ 0.15
CPSF1-206ENST00000531480 C1orf112Q9NSG2 853 aa15.97■□□□□ 0.15
CPSF1-206ENST00000531480 SEL1LQ9UBV2 794 aa15.97■□□□□ 0.15
CPSF1-206ENST00000531480 SLC4A7Q9Y6M7 1214 aa15.97■□□□□ 0.15
CPSF1-206ENST00000531480 CHD9Q3L8U1 2897 aa15.97■□□□□ 0.15
CPSF1-206ENST00000531480 SFI1A8K8P3 1242 aa15.96■□□□□ 0.15
CPSF1-206ENST00000531480 TSPAN1O60635 241 aa15.96■□□□□ 0.15
CPSF1-206ENST00000531480 ZNF202O95125 648 aa15.96■□□□□ 0.15
CPSF1-206ENST00000531480 MYL1P05976 194 aa15.96■□□□□ 0.15
CPSF1-206ENST00000531480 DEFB103AP81534 67 aa15.96■□□□□ 0.15
CPSF1-206ENST00000531480 CACNB1Q02641 598 aaPredicted RBP15.96■□□□□ 0.15
CPSF1-206ENST00000531480 EHHADHQ08426 723 aa15.96■□□□□ 0.15
CPSF1-206ENST00000531480 SLC24A5Q71RS6 500 aa15.96■□□□□ 0.15
CPSF1-206ENST00000531480 TAS1R3Q7RTX0 852 aa15.96■□□□□ 0.15
CPSF1-206ENST00000531480 CATSPER4Q7RTX7 472 aa15.96■□□□□ 0.15
CPSF1-206ENST00000531480 ZBTB8OSQ8IWT0 167 aa15.96■□□□□ 0.15
CPSF1-206ENST00000531480 DEPTORQ8TB45 409 aa15.96■□□□□ 0.15
CPSF1-206ENST00000531480 ADAM2Q99965 735 aa15.96■□□□□ 0.15
CPSF1-206ENST00000531480 STRA6Q9BX79 667 aa15.96■□□□□ 0.15
CPSF1-206ENST00000531480 RC3H2Q9HBD1 1191 aaKnown RBP15.96■□□□□ 0.15
CPSF1-206ENST00000531480 OLFML3Q9NRN5 406 aa15.96■□□□□ 0.15
CPSF1-206ENST00000531480 PRMT7Q9NVM4 692 aaPredicted RBP15.96■□□□□ 0.15
CPSF1-206ENST00000531480 SERTAD1Q9UHV2 236 aa15.96■□□□□ 0.15
CPSF1-206ENST00000531480 CNTNAP2Q9UHC6 1331 aa15.95■□□□□ 0.14
CPSF1-206ENST00000531480 A0A0U1RQF3 1178 aa15.95■□□□□ 0.14
CPSF1-206ENST00000531480 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.95■□□□□ 0.14
CPSF1-206ENST00000531480 A0A1B0GUA9 196 aa15.95■□□□□ 0.14
CPSF1-206ENST00000531480 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.95■□□□□ 0.14
CPSF1-206ENST00000531480 H0YCG3 227 aa15.95■□□□□ 0.14
CPSF1-206ENST00000531480 INO80B-WBP1J3KQ70 363 aa15.95■□□□□ 0.14
CPSF1-206ENST00000531480 ACKR2O00590 384 aa15.95■□□□□ 0.14
CPSF1-206ENST00000531480 ZNF623O75123 536 aa15.95■□□□□ 0.14
CPSF1-206ENST00000531480 FAM13AO94988 1023 aa15.95■□□□□ 0.14
CPSF1-206ENST00000531480 EDN1P05305 212 aa15.95■□□□□ 0.14
CPSF1-206ENST00000531480 ATP2A2P16615 1042 aaKnown RBP15.95■□□□□ 0.14
CPSF1-206ENST00000531480 GAP43P17677 238 aa15.95■□□□□ 0.14
CPSF1-206ENST00000531480 KCNJ6P48051 423 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms