RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 EDARQ9UNE0 448 aa5.17□□□□□ -1.58
CD44-233ENST00000531141 DUSP10Q9Y6W6 482 aa5.17□□□□□ -1.58
CD44-233ENST00000531141 WASHC2CQ9Y4E1 1318 aa5.17□□□□□ -1.58
CD44-233ENST00000531141 A0A0G2JLL6 359 aaPredicted RBP5.16□□□□□ -1.58
CD44-233ENST00000531141 PMS2P1A4D2B8 440 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 DAPK3O43293 454 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 B4GALT4O60513 344 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 MT-CO1P00395 513 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 PLATP00750 562 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 PDGFRBP09619 1106 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 HNRNPLP14866 589 aaKnown RBP eCLIP5.16□□□□□ -1.58
CD44-233ENST00000531141 HOXA5P20719 270 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 MTNR1BP49286 362 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 SLC5A3P53794 718 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 PPP2CBP62714 309 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 PPP2CAP67775 309 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 SRSF2Q01130 221 aaKnown RBP5.16□□□□□ -1.58
CD44-233ENST00000531141 MGAT5Q09328 741 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 TCIRG1Q13488 830 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 TBR1Q16650 682 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 MUM1Q2TAK8 710 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 GAGE13Q4V321 117 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 FBLN7Q53RD9 439 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 TOR2AQ5JU69 321 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 GJC2Q5T442 439 aaPredicted RBP5.16□□□□□ -1.58
CD44-233ENST00000531141 GAREM2Q75VX8 874 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 KCNK18Q7Z418 384 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 C1orf162Q8NEQ5 155 aaPredicted RBP5.16□□□□□ -1.58
CD44-233ENST00000531141 OR14K1Q8NGZ2 314 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 NEIL1Q96FI4 390 aaPredicted RBP5.16□□□□□ -1.58
CD44-233ENST00000531141 UIMC1Q96RL1 719 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 SMAD5Q99717 465 aaKnown RBP5.16□□□□□ -1.58
CD44-233ENST00000531141 ZNF277Q9NRM2 450 aaPredicted RBP5.16□□□□□ -1.58
CD44-233ENST00000531141 DPP7Q9UHL4 492 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 PUF60Q9UHX1 559 aaKnown RBP5.16□□□□□ -1.58
CD44-233ENST00000531141 OAZ3Q9UMX2 235 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 SPEF1Q9Y4P9 236 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 GPR45Q9Y5Y3 372 aa5.16□□□□□ -1.58
CD44-233ENST00000531141 LY86O95711 162 aa5.15□□□□□ -1.59
CD44-233ENST00000531141 MYBL2P10244 700 aa5.15□□□□□ -1.59
CD44-233ENST00000531141 GAAP10253 952 aa5.15□□□□□ -1.59
CD44-233ENST00000531141 RBP3P10745 1247 aa5.15□□□□□ -1.59
CD44-233ENST00000531141 NFIXQ14938 502 aa5.15□□□□□ -1.59
CD44-233ENST00000531141 ANO4Q32M45 955 aa5.15□□□□□ -1.59
CD44-233ENST00000531141 MBNL2Q5VZF2 373 aaKnown RBP5.15□□□□□ -1.59
CD44-233ENST00000531141 ERICH6BQ5W0A0 696 aa5.15□□□□□ -1.59
CD44-233ENST00000531141 PLA2G15Q8NCC3 412 aa5.15□□□□□ -1.59
CD44-233ENST00000531141 TSPEARQ8WU66 669 aa5.15□□□□□ -1.59
CD44-233ENST00000531141 STAG1Q8WVM7 1258 aa5.15□□□□□ -1.59
CD44-233ENST00000531141 CFHR4Q92496 578 aa5.15□□□□□ -1.59
CD44-233ENST00000531141 LMF1Q96S06 567 aa5.15□□□□□ -1.59
CD44-233ENST00000531141 CCDC8Q9H0W5 538 aaPredicted RBP5.15□□□□□ -1.59
CD44-233ENST00000531141 SLC6A15Q9H2J7 730 aa5.15□□□□□ -1.59
CD44-233ENST00000531141 IFT122Q9HBG6 1241 aa5.15□□□□□ -1.59
CD44-233ENST00000531141 MKS1Q9NXB0 559 aa5.15□□□□□ -1.59
CD44-233ENST00000531141 RBM8AQ9Y5S9 174 aaKnown RBP5.15□□□□□ -1.59
CD44-233ENST00000531141 A0A1W2PR48 441 aa5.14□□□□□ -1.59
CD44-233ENST00000531141 FZD9O00144 591 aa5.14□□□□□ -1.59
CD44-233ENST00000531141 NRP1O14786 923 aa5.14□□□□□ -1.59
CD44-233ENST00000531141 SLC26A4O43511 780 aa5.14□□□□□ -1.59
CD44-233ENST00000531141 JUNP05412 331 aaKnown RBP5.14□□□□□ -1.59
CD44-233ENST00000531141 VSIG10L2P0DP72 767 aa5.14□□□□□ -1.59
CD44-233ENST00000531141 AGXTP21549 392 aa5.14□□□□□ -1.59
CD44-233ENST00000531141 WNT3AP56704 352 aa5.14□□□□□ -1.59
CD44-233ENST00000531141 BPIFB4P59827 614 aa5.14□□□□□ -1.59
CD44-233ENST00000531141 TBC1D10BQ4KMP7 808 aaPredicted RBP5.14□□□□□ -1.59
CD44-233ENST00000531141 PIK3C3Q8NEB9 887 aa5.14□□□□□ -1.59
CD44-233ENST00000531141 RABGGTAQ92696 567 aa5.14□□□□□ -1.59
CD44-233ENST00000531141 LRRC37BQ96QE4 947 aa5.14□□□□□ -1.59
CD44-233ENST00000531141 ACE2Q9BYF1 805 aaPredicted RBP5.14□□□□□ -1.59
CD44-233ENST00000531141 SLC13A1Q9BZW2 595 aa5.14□□□□□ -1.59
CD44-233ENST00000531141 MRFAP1Q9Y605 127 aa5.14□□□□□ -1.59
CD44-233ENST00000531141 ZNF536O15090 1300 aa5.14□□□□□ -1.59
CD44-233ENST00000531141 C2orf78A6NCI8 922 aa5.13□□□□□ -1.59
CD44-233ENST00000531141 MATN2O00339 956 aa5.13□□□□□ -1.59
CD44-233ENST00000531141 PRICKLE3O43900 615 aaPredicted RBP5.13□□□□□ -1.59
CD44-233ENST00000531141 TMEM127O75204 238 aa5.13□□□□□ -1.59
CD44-233ENST00000531141 ALDH1A2O94788 518 aa5.13□□□□□ -1.59
CD44-233ENST00000531141 TOX4O94842 621 aa5.13□□□□□ -1.59
CD44-233ENST00000531141 LTA4HP09960 611 aaKnown RBP5.13□□□□□ -1.59
CD44-233ENST00000531141 OSMP13725 252 aa5.13□□□□□ -1.59
CD44-233ENST00000531141 CR2P20023 1033 aa5.13□□□□□ -1.59
CD44-233ENST00000531141 ADCY7P51828 1080 aa5.13□□□□□ -1.59
CD44-233ENST00000531141 NEK2P51955 445 aa5.13□□□□□ -1.59
CD44-233ENST00000531141 CLUL1Q15846 466 aa5.13□□□□□ -1.59
CD44-233ENST00000531141 ADRM1Q16186 407 aa5.13□□□□□ -1.59
CD44-233ENST00000531141 KRT40Q6A162 431 aa5.13□□□□□ -1.59
CD44-233ENST00000531141 PGM2L1Q6PCE3 622 aa5.13□□□□□ -1.59
CD44-233ENST00000531141 BTNL9Q6UXG8 535 aa5.13□□□□□ -1.59
CD44-233ENST00000531141 GLB1L3Q8NCI6 653 aaPredicted RBP5.13□□□□□ -1.59
CD44-233ENST00000531141 CHMP4CQ96CF2 233 aa5.13□□□□□ -1.59
CD44-233ENST00000531141 FUBP3Q96I24 572 aaKnown RBP eCLIP5.13□□□□□ -1.59
CD44-233ENST00000531141 PPP4R1LQ9P1A2 415 aa5.13□□□□□ -1.59
CD44-233ENST00000531141 CNOT11Q9UKZ1 510 aaKnown RBP5.13□□□□□ -1.59
CD44-233ENST00000531141 XPOTO43592 962 aaKnown RBP5.12□□□□□ -1.59
CD44-233ENST00000531141 CDC14BO60729 498 aa5.12□□□□□ -1.59
CD44-233ENST00000531141 PRAMEF4O60810 478 aa5.12□□□□□ -1.59
CD44-233ENST00000531141 RPS19P39019 145 aaKnown RBP5.12□□□□□ -1.59
CD44-233ENST00000531141 KIR2DL3P43628 341 aa5.12□□□□□ -1.59
CD44-233ENST00000531141 ADAM8P78325 824 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms