RNA–Protein interactions for RNA: ENST00000527323.5

CAPN1-208, Transcript of calpain 1, human

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN1, Length 3,086 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-208	ENST00000527323	RSPH10B	P0C881	870 aa		13.53	□□□□□ -0.24
CAPN1-208	ENST00000527323	ANGEL2	Q5VTE6	544 aa	Known RBP	13.53	□□□□□ -0.24
CAPN1-208	ENST00000527323	SLFN12	Q8IYM2	578 aa		13.53	□□□□□ -0.24
CAPN1-208	ENST00000527323	ANKS4B	Q8N8V4	417 aa		13.53	□□□□□ -0.24
CAPN1-208	ENST00000527323	CCDC197	Q8NCU1	140 aa		13.53	□□□□□ -0.24
CAPN1-208	ENST00000527323	HES6	Q96HZ4	224 aa		13.53	□□□□□ -0.24
CAPN1-208	ENST00000527323		A0A0A6YYK5	440 aa	Predicted RBP	13.53	□□□□□ -0.24
CAPN1-208	ENST00000527323	DRD4	P21917	467 aa		13.53	□□□□□ -0.24
CAPN1-208	ENST00000527323	NBPF12	Q5TAG4	269 aa	Predicted RBP	13.53	□□□□□ -0.24
CAPN1-208	ENST00000527323	DENND2C	Q68D51	928 aa		13.53	□□□□□ -0.24
CAPN1-208	ENST00000527323	DPY19L2P1	Q6NXN4	242 aa		13.53	□□□□□ -0.24
CAPN1-208	ENST00000527323	CCDC50	Q8IVM0	306 aa		13.53	□□□□□ -0.24
CAPN1-208	ENST00000527323	ZC3H3	Q8IXZ2	948 aa	Known RBP	13.53	□□□□□ -0.24
CAPN1-208	ENST00000527323	ANO3	Q9BYT9	981 aa		13.53	□□□□□ -0.24
CAPN1-208	ENST00000527323		A0A1W2PRG0	241 aa		13.52	□□□□□ -0.24
CAPN1-208	ENST00000527323	PEX10	O60683	326 aa		13.52	□□□□□ -0.24
CAPN1-208	ENST00000527323	SHBG	P04278	402 aa		13.52	□□□□□ -0.24
CAPN1-208	ENST00000527323	MME	P08473	750 aa		13.52	□□□□□ -0.24
CAPN1-208	ENST00000527323	EZR	P15311	586 aa	Known RBP	13.52	□□□□□ -0.24
CAPN1-208	ENST00000527323	CHN1	P15882	459 aa		13.52	□□□□□ -0.24
CAPN1-208	ENST00000527323	TNFAIP3	P21580	790 aa		13.52	□□□□□ -0.24
CAPN1-208	ENST00000527323	KCNA1	Q09470	495 aa		13.52	□□□□□ -0.24
CAPN1-208	ENST00000527323	PPP1R7	Q15435	360 aa		13.52	□□□□□ -0.24
CAPN1-208	ENST00000527323	SLC35C1	Q96A29	364 aa		13.52	□□□□□ -0.24
CAPN1-208	ENST00000527323	BHMT2	Q9H2M3	363 aa		13.52	□□□□□ -0.24
CAPN1-208	ENST00000527323	BCAS3	Q9H6U6	928 aa		13.52	□□□□□ -0.24
CAPN1-208	ENST00000527323	TYW1	Q9NV66	732 aa	Known RBP	13.52	□□□□□ -0.24
CAPN1-208	ENST00000527323	PI4KB	Q9UBF8	816 aa		13.52	□□□□□ -0.24
CAPN1-208	ENST00000527323	HACL1	Q9UJ83	578 aa		13.52	□□□□□ -0.24
CAPN1-208	ENST00000527323	RGS16	O15492	202 aa	Predicted RBP	13.52	□□□□□ -0.25
CAPN1-208	ENST00000527323	PPP1R12B	O60237	982 aa	Predicted RBP	13.52	□□□□□ -0.25
CAPN1-208	ENST00000527323	VIM	P08670	466 aa	Known RBP	13.52	□□□□□ -0.25
CAPN1-208	ENST00000527323	SNHG28	P0DPA3	235 aa		13.52	□□□□□ -0.25
CAPN1-208	ENST00000527323	HOXD13	P35453	343 aa		13.52	□□□□□ -0.25
CAPN1-208	ENST00000527323	PMS2	P54278	862 aa		13.52	□□□□□ -0.25
CAPN1-208	ENST00000527323	GABPA	Q06546	454 aa		13.52	□□□□□ -0.25
CAPN1-208	ENST00000527323	PREPL	Q4J6C6	727 aa	Predicted RBP	13.52	□□□□□ -0.25
CAPN1-208	ENST00000527323	GPATCH4	Q5T3I0	446 aa	Known RBP	13.52	□□□□□ -0.25
CAPN1-208	ENST00000527323	HIBCH	Q6NVY1	386 aa	Predicted RBP	13.52	□□□□□ -0.25
CAPN1-208	ENST00000527323	NAP1L3	Q99457	506 aa	Predicted RBP	13.52	□□□□□ -0.25
CAPN1-208	ENST00000527323	ERP44	Q9BS26	406 aa		13.52	□□□□□ -0.25
CAPN1-208	ENST00000527323	SIX2	Q9NPC8	291 aa		13.52	□□□□□ -0.25
CAPN1-208	ENST00000527323	BAIAP2L1	Q9UHR4	511 aa		13.52	□□□□□ -0.25
CAPN1-208	ENST00000527323	INTU	Q9ULD6	942 aa		13.52	□□□□□ -0.25
CAPN1-208	ENST00000527323	TPX2	Q9ULW0	747 aa	Known RBP	13.52	□□□□□ -0.25
CAPN1-208	ENST00000527323	CDK5RAP2	Q96SN8	1893 aa		13.52	□□□□□ -0.25
CAPN1-208	ENST00000527323	SMCHD1	A6NHR9	2005 aa		13.52	□□□□□ -0.25
CAPN1-208	ENST00000527323	FRMD3	A2A2Y4	597 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	C5orf60	A6NFR6	353 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	PPFIA2	O75334	1257 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	ZBTB48	P10074	688 aa	Predicted RBP	13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	LMNB1	P20700	586 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	ANXA13	P27216	316 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	NOV	P48745	357 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	NPEPPS	P55786	919 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	BYSL	Q13895	437 aa	Known RBP	13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	DRAP1	Q14919	205 aa	Predicted RBP	13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	ARHGAP44	Q17R89	818 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	USH1G	Q495M9	461 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	KIAA1755	Q5JYT7	1200 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	MOB2	Q70IA6	237 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	LNX1	Q8TBB1	728 aa	Predicted RBP	13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	NEK9	Q8TD19	979 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	RFFL	Q8WZ73	363 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	DNAJC12	Q9UKB3	198 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	CCDC169	A6NNP5	214 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	TMEM110-MUSTN1	A8MSY1	372 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	OPLAH	O14841	1288 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	PAEP	P09466	180 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	SOX5	P35711	763 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	QRICH1	Q2TAL8	776 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	ERMARD	Q5T6L9	678 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	FAM186B	Q8IYM0	893 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	SYT2	Q8N9I0	419 aa	Predicted RBP	13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	N4BP2L2	Q92802	583 aa	Predicted RBP	13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	AZI2	Q9H6S1	392 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	KCNMB3	Q9NPA1	279 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	TMOD4	Q9NZQ9	345 aa		13.51	□□□□□ -0.25
CAPN1-208	ENST00000527323	CCT8L1P	A6NM43	557 aa		13.5	□□□□□ -0.25
CAPN1-208	ENST00000527323	BHMG1	C9JSJ3	638 aa	Predicted RBP	13.5	□□□□□ -0.25
CAPN1-208	ENST00000527323	SLCO1A2	P46721	670 aa		13.5	□□□□□ -0.25
CAPN1-208	ENST00000527323	HIRA	P54198	1017 aa	Predicted RBP	13.5	□□□□□ -0.25
CAPN1-208	ENST00000527323	JAM2	P57087	298 aa		13.5	□□□□□ -0.25
CAPN1-208	ENST00000527323	ABCB5	Q2M3G0	1257 aa		13.5	□□□□□ -0.25
CAPN1-208	ENST00000527323	CHADL	Q6NUI6	762 aa		13.5	□□□□□ -0.25
CAPN1-208	ENST00000527323	CCT6B	Q92526	530 aa		13.5	□□□□□ -0.25
CAPN1-208	ENST00000527323	ELAC2	Q9BQ52	826 aa	Known RBP	13.5	□□□□□ -0.25
CAPN1-208	ENST00000527323	FAM129A	Q9BZQ8	928 aa		13.5	□□□□□ -0.25
CAPN1-208	ENST00000527323	IKZF4	Q9H2S9	585 aa		13.5	□□□□□ -0.25
CAPN1-208	ENST00000527323	INTS9	Q9NV88	658 aa	Known RBP	13.5	□□□□□ -0.25
CAPN1-208	ENST00000527323	SAMD15	Q9P1V8	674 aa		13.5	□□□□□ -0.25
CAPN1-208	ENST00000527323	RASAL2	Q9UJF2	1139 aa		13.5	□□□□□ -0.25
CAPN1-208	ENST00000527323	IFNAR2	P48551	515 aa		13.5	□□□□□ -0.25
CAPN1-208	ENST00000527323	PTEN	P60484	403 aa		13.5	□□□□□ -0.25
CAPN1-208	ENST00000527323	ARHGAP4	P98171	946 aa		13.5	□□□□□ -0.25
CAPN1-208	ENST00000527323	ICA1	Q05084	483 aa		13.5	□□□□□ -0.25
CAPN1-208	ENST00000527323	C9orf131	Q5VYM1	1079 aa		13.5	□□□□□ -0.25
CAPN1-208	ENST00000527323	SIAH1	Q8IUQ4	282 aa		13.5	□□□□□ -0.25
CAPN1-208	ENST00000527323	MYCT1	Q8N699	235 aa		13.5	□□□□□ -0.25
CAPN1-208	ENST00000527323	FBXO25	Q8TCJ0	367 aa		13.5	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 27 ms