RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 PRUNE2Q8WUY3 3088 aa22.9■■□□□ 1.26
VPS28-206ENST00000526734 UNC80Q8N2C7 3258 aa22.9■■□□□ 1.26
VPS28-206ENST00000526734 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP22.9■■□□□ 1.26
VPS28-206ENST00000526734 ARHGEF35A5YM69 484 aa22.9■■□□□ 1.26
VPS28-206ENST00000526734 ATF7P17544 494 aaPredicted RBP22.9■■□□□ 1.26
VPS28-206ENST00000526734 PDCP20941 246 aa22.9■■□□□ 1.26
VPS28-206ENST00000526734 CCT6AP40227 531 aaKnown RBP22.9■■□□□ 1.26
VPS28-206ENST00000526734 COL19A1Q14993 1142 aa22.9■■□□□ 1.26
VPS28-206ENST00000526734 TCEAL5Q5H9L2 206 aa22.9■■□□□ 1.26
VPS28-206ENST00000526734 POTEGQ6S5H5 508 aa22.9■■□□□ 1.26
VPS28-206ENST00000526734 DTHD1Q6ZMT9 781 aa22.9■■□□□ 1.26
VPS28-206ENST00000526734 CNNM3Q8NE01 707 aa22.9■■□□□ 1.26
VPS28-206ENST00000526734 SPPL3Q8TCT6 385 aa22.9■■□□□ 1.26
VPS28-206ENST00000526734 POLR3FQ9H1D9 316 aaPredicted RBP22.9■■□□□ 1.26
VPS28-206ENST00000526734 CWH43Q9H720 699 aa22.9■■□□□ 1.26
VPS28-206ENST00000526734 ALG13Q9NP73 1137 aaKnown RBP22.9■■□□□ 1.26
VPS28-206ENST00000526734 LZTS1Q9Y250 596 aa22.9■■□□□ 1.26
VPS28-206ENST00000526734 FNDC1Q4ZHG4 1894 aaPredicted RBP22.9■■□□□ 1.26
VPS28-206ENST00000526734 TFF2Q03403 129 aa22.89■■□□□ 1.25
VPS28-206ENST00000526734 CAPSQ13938 189 aa22.89■■□□□ 1.25
VPS28-206ENST00000526734 CLLU1OSQ5K130 101 aa22.89■■□□□ 1.25
VPS28-206ENST00000526734 KRT79Q5XKE5 535 aa22.89■■□□□ 1.25
VPS28-206ENST00000526734 PDE12Q6L8Q7 609 aaKnown RBP22.89■■□□□ 1.25
VPS28-206ENST00000526734 GLB1LQ6UWU2 654 aa22.89■■□□□ 1.25
VPS28-206ENST00000526734 THNSL1Q8IYQ7 743 aa22.89■■□□□ 1.25
VPS28-206ENST00000526734 KCTD17Q8N5Z5 321 aa22.89■■□□□ 1.25
VPS28-206ENST00000526734 PABPC5Q96DU9 382 aaKnown RBP22.89■■□□□ 1.25
VPS28-206ENST00000526734 ZNF558Q96NG5 402 aa22.89■■□□□ 1.25
VPS28-206ENST00000526734 MINDY3Q9H8M7 445 aa22.89■■□□□ 1.25
VPS28-206ENST00000526734 DAXXQ9UER7 740 aaPredicted RBP22.89■■□□□ 1.25
VPS28-206ENST00000526734 CUL9Q8IWT3 2517 aa22.88■■□□□ 1.25
VPS28-206ENST00000526734 CNTNAP2Q9UHC6 1331 aa22.88■■□□□ 1.25
VPS28-206ENST00000526734 FSD2A1L4K1 749 aa22.88■■□□□ 1.25
VPS28-206ENST00000526734 CYP11B2P19099 503 aa22.88■■□□□ 1.25
VPS28-206ENST00000526734 GLRA2P23416 452 aa22.88■■□□□ 1.25
VPS28-206ENST00000526734 ATP2C1P98194 919 aaPredicted RBP22.88■■□□□ 1.25
VPS28-206ENST00000526734 PLCB3Q01970 1234 aa22.88■■□□□ 1.25
VPS28-206ENST00000526734 PADI6Q6TGC4 694 aa22.88■■□□□ 1.25
VPS28-206ENST00000526734 BRAPQ7Z569 592 aa22.88■■□□□ 1.25
VPS28-206ENST00000526734 HELQQ8TDG4 1101 aa22.88■■□□□ 1.25
VPS28-206ENST00000526734 ASAP3Q8TDY4 903 aa22.88■■□□□ 1.25
VPS28-206ENST00000526734 SNX29Q8TEQ0 813 aa22.88■■□□□ 1.25
VPS28-206ENST00000526734 POF1BQ8WVV4 589 aa22.88■■□□□ 1.25
VPS28-206ENST00000526734 KIAA1671Q9BY89 1806 aa22.87■■□□□ 1.25
VPS28-206ENST00000526734 INO80B-WBP1J3KQ70 363 aa22.87■■□□□ 1.25
VPS28-206ENST00000526734 FGF18O76093 207 aa22.87■■□□□ 1.25
VPS28-206ENST00000526734 BMP15O95972 392 aa22.87■■□□□ 1.25
VPS28-206ENST00000526734 BMP1P13497 986 aa22.87■■□□□ 1.25
VPS28-206ENST00000526734 HOXA11P31270 313 aaPredicted RBP22.87■■□□□ 1.25
VPS28-206ENST00000526734 PUS10Q3MIT2 529 aaKnown RBP22.87■■□□□ 1.25
VPS28-206ENST00000526734 LEXMQ3ZCV2 418 aa22.87■■□□□ 1.25
VPS28-206ENST00000526734 ARL6IP4Q66PJ3 421 aaKnown RBP22.87■■□□□ 1.25
VPS28-206ENST00000526734 NOTUMQ6P988 496 aa22.87■■□□□ 1.25
VPS28-206ENST00000526734 ADAMTS19Q8TE59 1207 aa22.87■■□□□ 1.25
VPS28-206ENST00000526734 C2orf40Q9H1Z8 148 aa22.87■■□□□ 1.25
VPS28-206ENST00000526734 PUF60Q9UHX1 559 aaKnown RBP22.87■■□□□ 1.25
VPS28-206ENST00000526734 PCDHB2Q9Y5E7 798 aa22.87■■□□□ 1.25
VPS28-206ENST00000526734 A0A0C4DFX4 3053 aa22.87■■□□□ 1.25
VPS28-206ENST00000526734 TSPAN1O60635 241 aa22.86■■□□□ 1.25
VPS28-206ENST00000526734 MBTD1Q05BQ5 628 aa22.86■■□□□ 1.25
VPS28-206ENST00000526734 CAMK1Q14012 370 aa22.86■■□□□ 1.25
VPS28-206ENST00000526734 PPP2R5AQ15172 486 aa22.86■■□□□ 1.25
VPS28-206ENST00000526734 KCNT2Q6UVM3 1135 aa22.86■■□□□ 1.25
VPS28-206ENST00000526734 LRRC55Q6ZSA7 311 aa22.86■■□□□ 1.25
VPS28-206ENST00000526734 MRPL10Q7Z7H8 261 aaKnown RBP22.86■■□□□ 1.25
VPS28-206ENST00000526734 ZBTB8OSQ8IWT0 167 aa22.86■■□□□ 1.25
VPS28-206ENST00000526734 INTS4Q96HW7 963 aaKnown RBP22.86■■□□□ 1.25
VPS28-206ENST00000526734 PRIMPOLQ96LW4 560 aa22.86■■□□□ 1.25
VPS28-206ENST00000526734 UBN1Q9NPG3 1134 aa22.86■■□□□ 1.25
VPS28-206ENST00000526734 KRT17Q04695 432 aa22.85■■□□□ 1.25
VPS28-206ENST00000526734 NOMO2Q5JPE7 1267 aa22.85■■□□□ 1.25
VPS28-206ENST00000526734 HACE1Q8IYU2 909 aa22.85■■□□□ 1.25
VPS28-206ENST00000526734 URGCPQ8TCY9 931 aa22.85■■□□□ 1.25
VPS28-206ENST00000526734 MRPS27Q92552 414 aaKnown RBP22.85■■□□□ 1.25
VPS28-206ENST00000526734 TLR9Q9NR96 1032 aa22.85■■□□□ 1.25
VPS28-206ENST00000526734 DDX19AQ9NUU7 478 aaKnown RBP22.85■■□□□ 1.25
VPS28-206ENST00000526734 PRMT7Q9NVM4 692 aaPredicted RBP22.85■■□□□ 1.25
VPS28-206ENST00000526734 SPG21Q9NZD8 308 aa22.85■■□□□ 1.25
VPS28-206ENST00000526734 KIAA1024Q9UPX6 916 aa22.85■■□□□ 1.25
VPS28-206ENST00000526734 DNM3Q9UQ16 869 aa22.85■■□□□ 1.25
VPS28-206ENST00000526734 A0A087WWV3 80 aa22.84■■□□□ 1.25
VPS28-206ENST00000526734 LRRIQ4A6NIV6 560 aa22.84■■□□□ 1.25
VPS28-206ENST00000526734 SLC26A4O43511 780 aa22.84■■□□□ 1.25
VPS28-206ENST00000526734 NCLP19338 710 aaKnown RBP22.84■■□□□ 1.25
VPS28-206ENST00000526734 KCNA5P22460 613 aa22.84■■□□□ 1.25
VPS28-206ENST00000526734 DNAJB1P25685 340 aa22.84■■□□□ 1.25
VPS28-206ENST00000526734 NAMPTP43490 491 aa22.84■■□□□ 1.25
VPS28-206ENST00000526734 KCNQ1P51787 676 aa22.84■■□□□ 1.25
VPS28-206ENST00000526734 UBXN11Q5T124 520 aa22.84■■□□□ 1.25
VPS28-206ENST00000526734 CDCA2Q69YH5 1023 aaPredicted RBP22.84■■□□□ 1.25
VPS28-206ENST00000526734 PPP4R3CPQ6ZMV5 832 aa22.84■■□□□ 1.25
VPS28-206ENST00000526734 KIFAP3Q92845 792 aa22.84■■□□□ 1.25
VPS28-206ENST00000526734 UHRF1Q96T88 793 aaPredicted RBP22.84■■□□□ 1.25
VPS28-206ENST00000526734 CSRNP2Q9H175 543 aa22.84■■□□□ 1.25
VPS28-206ENST00000526734 BHMT2Q9H2M3 363 aa22.84■■□□□ 1.25
VPS28-206ENST00000526734 KANSL3Q9P2N6 904 aa22.84■■□□□ 1.25
VPS28-206ENST00000526734 HCSTQ9UBK5 93 aa22.84■■□□□ 1.25
VPS28-206ENST00000526734 FAM50BQ9Y247 325 aa22.84■■□□□ 1.25
VPS28-206ENST00000526734 EYA4O95677 639 aa22.83■■□□□ 1.25
VPS28-206ENST00000526734 ALDH7A1P49419 539 aaKnown RBP22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms