RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 AGO4Q9HCK5 861 aaKnown RBP23■■□□□ 1.27
VPS28-205ENST00000526204 MAP3K20Q9NYL2 800 aaKnown RBP23■■□□□ 1.27
VPS28-205ENST00000526204 FRMD4AQ9P2Q2 1039 aaPredicted RBP23■■□□□ 1.27
VPS28-205ENST00000526204 PLAAQ9Y263 795 aa23■■□□□ 1.27
VPS28-205ENST00000526204 UBIAD1Q9Y5Z9 338 aa23■■□□□ 1.27
VPS28-205ENST00000526204 ZNF536O15090 1300 aa23■■□□□ 1.27
VPS28-205ENST00000526204 LOXHD1Q8IVV2 1947 aa23■■□□□ 1.27
VPS28-205ENST00000526204 RARRES1P49788 294 aa23■■□□□ 1.27
VPS28-205ENST00000526204 MTMR3Q13615 1198 aa23■■□□□ 1.27
VPS28-205ENST00000526204 TKFCQ3LXA3 575 aa23■■□□□ 1.27
VPS28-205ENST00000526204 SAMD3Q8N6K7 520 aa23■■□□□ 1.27
VPS28-205ENST00000526204 IWS1Q96ST2 819 aa23■■□□□ 1.27
VPS28-205ENST00000526204 GLIS2Q9BZE0 524 aaPredicted RBP23■■□□□ 1.27
VPS28-205ENST00000526204 ST6GALNAC4Q9H4F1 302 aa23■■□□□ 1.27
VPS28-205ENST00000526204 SEPT11Q9NVA2 429 aaKnown RBP23■■□□□ 1.27
VPS28-205ENST00000526204 AMACRQ9UHK6 382 aa23■■□□□ 1.27
VPS28-205ENST00000526204 UTP11Q9Y3A2 253 aaKnown RBP23■■□□□ 1.27
VPS28-205ENST00000526204 EMSYQ7Z589 1322 aa23■■□□□ 1.27
VPS28-205ENST00000526204 PSME4Q14997 1843 aa23■■□□□ 1.27
VPS28-205ENST00000526204 DDX3YO15523 660 aaKnown RBP22.99■■□□□ 1.27
VPS28-205ENST00000526204 ITGA4P13612 1032 aa22.99■■□□□ 1.27
VPS28-205ENST00000526204 KCTD16Q68DU8 428 aa22.99■■□□□ 1.27
VPS28-205ENST00000526204 XXYLT1Q8NBI6 393 aa22.99■■□□□ 1.27
VPS28-205ENST00000526204 SLC17A8Q8NDX2 589 aa22.99■■□□□ 1.27
VPS28-205ENST00000526204 CLEC4DQ8WXI8 215 aa22.99■■□□□ 1.27
VPS28-205ENST00000526204 UBE2TQ9NPD8 197 aaPredicted RBP22.99■■□□□ 1.27
VPS28-205ENST00000526204 FAM114A2Q9NRY5 505 aa22.99■■□□□ 1.27
VPS28-205ENST00000526204 TBC1D22BQ9NU19 505 aa22.99■■□□□ 1.27
VPS28-205ENST00000526204 PPP1R9AQ9ULJ8 1098 aa22.99■■□□□ 1.27
VPS28-205ENST00000526204 SAMM50Q9Y512 469 aa22.99■■□□□ 1.27
VPS28-205ENST00000526204 PMM2O15305 246 aa22.99■■□□□ 1.27
VPS28-205ENST00000526204 FGGP02679 453 aa22.99■■□□□ 1.27
VPS28-205ENST00000526204 INPP5BP32019 993 aa22.99■■□□□ 1.27
VPS28-205ENST00000526204 TCEAL1Q15170 157 aa22.99■■□□□ 1.27
VPS28-205ENST00000526204 C10orf67Q8IYJ2 551 aa22.99■■□□□ 1.27
VPS28-205ENST00000526204 SH2D3CQ8N5H7 860 aa22.99■■□□□ 1.27
VPS28-205ENST00000526204 THAP2Q9H0W7 228 aa22.99■■□□□ 1.27
VPS28-205ENST00000526204 COL20A1Q9P218 1284 aa22.99■■□□□ 1.27
VPS28-205ENST00000526204 ZBTB12Q9Y330 459 aaPredicted RBP22.99■■□□□ 1.27
VPS28-205ENST00000526204 EBAG9O00559 213 aa22.98■■□□□ 1.27
VPS28-205ENST00000526204 NFIBO00712 420 aa22.98■■□□□ 1.27
VPS28-205ENST00000526204 HSD17B3P37058 310 aa22.98■■□□□ 1.27
VPS28-205ENST00000526204 CORO7P57737 925 aa22.98■■□□□ 1.27
VPS28-205ENST00000526204 SLC20A2Q08357 652 aa22.98■■□□□ 1.27
VPS28-205ENST00000526204 MAEAQ7L5Y9 396 aa22.98■■□□□ 1.27
VPS28-205ENST00000526204 CDAN1Q8IWY9 1227 aa22.98■■□□□ 1.27
VPS28-205ENST00000526204 TTLL6Q8N841 843 aa22.98■■□□□ 1.27
VPS28-205ENST00000526204 AGBL3Q8NEM8 1001 aa22.98■■□□□ 1.27
VPS28-205ENST00000526204 LPAR1Q92633 364 aa22.98■■□□□ 1.27
VPS28-205ENST00000526204 PCIF1Q9H4Z3 704 aa22.98■■□□□ 1.27
VPS28-205ENST00000526204 PKD2L1Q9P0L9 805 aa22.98■■□□□ 1.27
VPS28-205ENST00000526204 PFASO15067 1338 aa22.98■■□□□ 1.27
VPS28-205ENST00000526204 IGSF9BQ9UPX0 1349 aa22.98■■□□□ 1.27
VPS28-205ENST00000526204 GOLGA6L10A0A0M3HER8 536 aa22.97■■□□□ 1.27
VPS28-205ENST00000526204 WDR46O15213 610 aaKnown RBP22.97■■□□□ 1.27
VPS28-205ENST00000526204 NR1D1P20393 614 aa22.97■■□□□ 1.27
VPS28-205ENST00000526204 DLG4P78352 724 aa22.97■■□□□ 1.27
VPS28-205ENST00000526204 GTF2BQ00403 316 aa22.97■■□□□ 1.27
VPS28-205ENST00000526204 ITGB3BPQ13352 177 aaPredicted RBP22.97■■□□□ 1.27
VPS28-205ENST00000526204 MTMR1Q13613 665 aa22.97■■□□□ 1.27
VPS28-205ENST00000526204 EPC2Q52LR7 807 aa22.97■■□□□ 1.27
VPS28-205ENST00000526204 CEP85LQ5SZL2 805 aa22.97■■□□□ 1.27
VPS28-205ENST00000526204 ZNF341Q9BYN7 854 aa22.97■■□□□ 1.27
VPS28-205ENST00000526204 VPS33BQ9H267 617 aa22.97■■□□□ 1.27
VPS28-205ENST00000526204 LRRN2O75325 713 aa22.97■■□□□ 1.27
VPS28-205ENST00000526204 HAUS6Q7Z4H7 955 aa22.97■■□□□ 1.27
VPS28-205ENST00000526204 IL31RAQ8NI17 732 aa22.97■■□□□ 1.27
VPS28-205ENST00000526204 ARHGEF26Q96DR7 871 aa22.97■■□□□ 1.27
VPS28-205ENST00000526204 RAB17Q9H0T7 212 aa22.97■■□□□ 1.27
VPS28-205ENST00000526204 TMBIM4Q9HC24 238 aa22.97■■□□□ 1.27
VPS28-205ENST00000526204 TAS2R14Q9NYV8 317 aa22.97■■□□□ 1.27
VPS28-205ENST00000526204 HSPBP1Q9NZL4 362 aa22.97■■□□□ 1.27
VPS28-205ENST00000526204 USP20Q9Y2K6 914 aa22.97■■□□□ 1.27
VPS28-205ENST00000526204 TRIM66O15016 1216 aa22.96■■□□□ 1.27
VPS28-205ENST00000526204 ZEB2O60315 1214 aa22.96■■□□□ 1.27
VPS28-205ENST00000526204 MYZAPP0CAP1 466 aa22.96■■□□□ 1.27
VPS28-205ENST00000526204 YWHABP31946 246 aaKnown RBP22.96■■□□□ 1.27
VPS28-205ENST00000526204 CCT5P48643 541 aa22.96■■□□□ 1.27
VPS28-205ENST00000526204 PTENP60484 403 aa22.96■■□□□ 1.27
VPS28-205ENST00000526204 POU5F1Q01860 360 aaKnown RBP22.96■■□□□ 1.27
VPS28-205ENST00000526204 PPP3CAQ08209 521 aa22.96■■□□□ 1.27
VPS28-205ENST00000526204 DDX42Q86XP3 938 aaKnown RBP eCLIP22.96■■□□□ 1.27
VPS28-205ENST00000526204 RNPC3Q96LT9 517 aaKnown RBP22.96■■□□□ 1.27
VPS28-205ENST00000526204 CBWD1Q9BRT8 395 aa22.96■■□□□ 1.27
VPS28-205ENST00000526204 PGAP2Q9UHJ9 254 aa22.96■■□□□ 1.27
VPS28-205ENST00000526204 MIF4GDA9UHW6 222 aaKnown RBP22.96■■□□□ 1.27
VPS28-205ENST00000526204 TTI1O43156 1089 aa22.96■■□□□ 1.27
VPS28-205ENST00000526204 DAPK3O43293 454 aa22.96■■□□□ 1.27
VPS28-205ENST00000526204 MAGEA9P43362 315 aa22.96■■□□□ 1.27
VPS28-205ENST00000526204 C11orf63Q6NUN7 778 aa22.96■■□□□ 1.27
VPS28-205ENST00000526204 RUFY4Q6ZNE9 571 aa22.96■■□□□ 1.27
VPS28-205ENST00000526204 C4orf19Q8IY42 314 aa22.96■■□□□ 1.27
VPS28-205ENST00000526204 RGS17Q9UGC6 210 aaPredicted RBP22.96■■□□□ 1.27
VPS28-205ENST00000526204 GOLGB1Q14789 3259 aaKnown RBP22.95■■□□□ 1.27
VPS28-205ENST00000526204 H0YGN5 161 aa22.95■■□□□ 1.26
VPS28-205ENST00000526204 CTNNA1P35221 906 aaKnown RBP22.95■■□□□ 1.26
VPS28-205ENST00000526204 MCCD1P59942 119 aaPredicted RBP22.95■■□□□ 1.26
VPS28-205ENST00000526204 MRPS9P82933 396 aaKnown RBP22.95■■□□□ 1.26
VPS28-205ENST00000526204 PDCLQ13371 301 aa22.95■■□□□ 1.26
VPS28-205ENST00000526204 ARFGAP2Q8N6H7 521 aa22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms