RNA–Protein interactions for RNA: ENST00000525854.5

HIF3A-209, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 5

Gene HIF3A, Length 767 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-209ENST00000525854 PGBD4Q96DM1 585 aa12.97□□□□□ -0.33
HIF3A-209ENST00000525854 CDCA3Q99618 268 aaPredicted RBP12.97□□□□□ -0.33
HIF3A-209ENST00000525854 MTRQ99707 1265 aa12.97□□□□□ -0.33
HIF3A-209ENST00000525854 FOXP1Q9H334 677 aaPredicted RBP12.97□□□□□ -0.33
HIF3A-209ENST00000525854 NGRNQ9NPE2 291 aaKnown RBP12.97□□□□□ -0.33
HIF3A-209ENST00000525854 ANKEF1Q9NU02 776 aa12.97□□□□□ -0.33
HIF3A-209ENST00000525854 AGPAT5Q9NUQ2 364 aa12.97□□□□□ -0.33
HIF3A-209ENST00000525854 FAM105AQ9NUU6 356 aa12.97□□□□□ -0.33
HIF3A-209ENST00000525854 HCSTQ9UBK5 93 aa12.97□□□□□ -0.33
HIF3A-209ENST00000525854 FSCN2O14926 492 aa12.96□□□□□ -0.33
HIF3A-209ENST00000525854 ZBTB39O15060 712 aa12.96□□□□□ -0.33
HIF3A-209ENST00000525854 LINC01565O15544 149 aa12.96□□□□□ -0.33
HIF3A-209ENST00000525854 TBX10O75333 385 aa12.96□□□□□ -0.33
HIF3A-209ENST00000525854 DGAT1O75907 488 aa12.96□□□□□ -0.33
HIF3A-209ENST00000525854 SRGAP2BP0DMP2 458 aa12.96□□□□□ -0.33
HIF3A-209ENST00000525854 XRCC6P12956 609 aaKnown RBP eCLIP12.96□□□□□ -0.33
HIF3A-209ENST00000525854 ATP2B1P20020 1258 aa12.96□□□□□ -0.33
HIF3A-209ENST00000525854 MCM7P33993 719 aa12.96□□□□□ -0.33
HIF3A-209ENST00000525854 DLX2Q07687 328 aaPredicted RBP12.96□□□□□ -0.33
HIF3A-209ENST00000525854 NCBP1Q09161 790 aaKnown RBP12.96□□□□□ -0.33
HIF3A-209ENST00000525854 BMS1Q14692 1282 aaKnown RBP12.96□□□□□ -0.33
HIF3A-209ENST00000525854 SMAD2Q15796 467 aaKnown RBP12.96□□□□□ -0.33
HIF3A-209ENST00000525854 CLUL1Q15846 466 aa12.96□□□□□ -0.33
HIF3A-209ENST00000525854 RBM23Q86U06 439 aaKnown RBP12.96□□□□□ -0.33
HIF3A-209ENST00000525854 ADHFE1Q8IWW8 467 aa12.96□□□□□ -0.33
HIF3A-209ENST00000525854 RNF149Q8NC42 400 aa12.96□□□□□ -0.33
HIF3A-209ENST00000525854 FBXO18Q8NFZ0 1043 aa12.96□□□□□ -0.33
HIF3A-209ENST00000525854 POP1Q99575 1024 aaKnown RBP12.96□□□□□ -0.33
HIF3A-209ENST00000525854 KIF2CQ99661 725 aa12.96□□□□□ -0.33
HIF3A-209ENST00000525854 BMP2KQ9NSY1 1161 aaPredicted RBP12.96□□□□□ -0.33
HIF3A-209ENST00000525854 FNDC1Q4ZHG4 1894 aaPredicted RBP12.95□□□□□ -0.34
HIF3A-209ENST00000525854 WNT7AO00755 349 aa12.95□□□□□ -0.34
HIF3A-209ENST00000525854 MBTPS2O43462 519 aa12.95□□□□□ -0.34
HIF3A-209ENST00000525854 ERLIN2O94905 339 aa12.95□□□□□ -0.34
HIF3A-209ENST00000525854 EYA4O95677 639 aa12.95□□□□□ -0.34
HIF3A-209ENST00000525854 TRAPPC10P48553 1259 aa12.95□□□□□ -0.34
HIF3A-209ENST00000525854 ERVFC1P60507 584 aa12.95□□□□□ -0.34
HIF3A-209ENST00000525854 ZP2Q05996 745 aa12.95□□□□□ -0.34
HIF3A-209ENST00000525854 POU5F1BQ06416 359 aa12.95□□□□□ -0.34
HIF3A-209ENST00000525854 COASYQ13057 564 aa12.95□□□□□ -0.34
HIF3A-209ENST00000525854 NOMO2Q5JPE7 1267 aa12.95□□□□□ -0.34
HIF3A-209ENST00000525854 ERMNQ8TAM6 284 aa12.95□□□□□ -0.34
HIF3A-209ENST00000525854 TCF25Q9BQ70 676 aa12.95□□□□□ -0.34
HIF3A-209ENST00000525854 TUFT1Q9NNX1 390 aa12.95□□□□□ -0.34
HIF3A-209ENST00000525854 CD320Q9NPF0 282 aa12.95□□□□□ -0.34
HIF3A-209ENST00000525854 ENTPD7Q9NQZ7 604 aa12.95□□□□□ -0.34
HIF3A-209ENST00000525854 NOL7Q9UMY1 257 aaKnown RBP12.95□□□□□ -0.34
HIF3A-209ENST00000525854 PCDHB2Q9Y5E7 798 aa12.95□□□□□ -0.34
HIF3A-209ENST00000525854 CNTNAP2Q9UHC6 1331 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 POTEMA6NI47 508 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 PI4K2BG5E9Z4 385 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 PER2O15055 1255 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 ST18O60284 1047 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 OR52Z1P0C646 297 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 ALADP13716 330 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 AXLP30530 894 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 PBX3P40426 434 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 RARRES1P49788 294 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 BCAR1P56945 870 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 PTENP60484 403 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 RNASELQ05823 741 aaKnown RBP12.94□□□□□ -0.34
HIF3A-209ENST00000525854 RABEP1Q15276 862 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 DUSP6Q16828 381 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 PLPP4Q5VZY2 271 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 TMC7Q7Z402 723 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 NOSTRINQ8IVI9 506 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 SLC39A11Q8N1S5 342 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 SMRP1Q8NCR6 262 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 CNNM3Q8NE01 707 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 URGCPQ8TCY9 931 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 LPPQ93052 612 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 CCDC51Q96ER9 411 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 TMEM169Q96HH4 297 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 MSLNLQ96KJ4 702 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 TMEM60Q9H2L4 133 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 EPHX3Q9H6B9 360 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 MINDY3Q9H8M7 445 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 UPF2Q9HAU5 1272 aaKnown RBP12.94□□□□□ -0.34
HIF3A-209ENST00000525854 XPNPEP1Q9NQW7 623 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 CLEC1BQ9P126 229 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 INPP5FQ9Y2H2 1132 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 KIF3AQ9Y496 699 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 PCDHGC5Q9Y5F6 944 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 KIAA1671Q9BY89 1806 aa12.94□□□□□ -0.34
HIF3A-209ENST00000525854 INO80B-WBP1J3KQ70 363 aa12.93□□□□□ -0.34
HIF3A-209ENST00000525854 ZC3H11AO75152 810 aaKnown RBP eCLIP12.93□□□□□ -0.34
HIF3A-209ENST00000525854 OFD1O75665 1012 aa12.93□□□□□ -0.34
HIF3A-209ENST00000525854 COL9A1P20849 921 aa12.93□□□□□ -0.34
HIF3A-209ENST00000525854 HOXA11P31270 313 aaPredicted RBP12.93□□□□□ -0.34
HIF3A-209ENST00000525854 ARL2P36404 184 aa12.93□□□□□ -0.34
HIF3A-209ENST00000525854 TECP42680 631 aa12.93□□□□□ -0.34
HIF3A-209ENST00000525854 SMC1AQ14683 1233 aaKnown RBP12.93□□□□□ -0.34
HIF3A-209ENST00000525854 ZNF174Q15697 407 aa12.93□□□□□ -0.34
HIF3A-209ENST00000525854 LONRF3Q496Y0 759 aa12.93□□□□□ -0.34
HIF3A-209ENST00000525854 TMEM31Q5JXX7 168 aa12.93□□□□□ -0.34
HIF3A-209ENST00000525854 TTC38Q5R3I4 469 aa12.93□□□□□ -0.34
HIF3A-209ENST00000525854 MRPL10Q7Z7H8 261 aaKnown RBP12.93□□□□□ -0.34
HIF3A-209ENST00000525854 IFNLR1Q8IU57 520 aaPredicted RBP12.93□□□□□ -0.34
HIF3A-209ENST00000525854 PIGOQ8TEQ8 1089 aa12.93□□□□□ -0.34
HIF3A-209ENST00000525854 NACC1Q96RE7 527 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms