RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 CDK5RAP1Q96SZ6 601 aaKnown RBP5.72□□□□□ -1.49
CD44-217ENST00000525348 HIST1H2AJQ99878 128 aa5.72□□□□□ -1.49
CD44-217ENST00000525348 OSBPL6Q9BZF3 934 aa5.72□□□□□ -1.49
CD44-217ENST00000525348 VTA1Q9NP79 307 aa5.72□□□□□ -1.49
CD44-217ENST00000525348 SH3BP1Q9Y3L3 701 aa5.72□□□□□ -1.49
CD44-217ENST00000525348 ST20-MTHFSA0A0A6YYL1 179 aa5.71□□□□□ -1.5
CD44-217ENST00000525348 UBE2QL1A1L167 161 aa5.71□□□□□ -1.5
CD44-217ENST00000525348 ZEB2O60315 1214 aa5.71□□□□□ -1.5
CD44-217ENST00000525348 EYA4O95677 639 aa5.71□□□□□ -1.5
CD44-217ENST00000525348 VIL1P09327 827 aaKnown RBP5.71□□□□□ -1.5
CD44-217ENST00000525348 SOX5P35711 763 aa5.71□□□□□ -1.5
CD44-217ENST00000525348 PRKD1Q15139 912 aaPredicted RBP5.71□□□□□ -1.5
CD44-217ENST00000525348 GAGE13Q4V321 117 aa5.71□□□□□ -1.5
CD44-217ENST00000525348 PITRM1Q5JRX3 1037 aa5.71□□□□□ -1.5
CD44-217ENST00000525348 HDGFL2Q7Z4V5 671 aaPredicted RBP5.71□□□□□ -1.5
CD44-217ENST00000525348 RASSF3Q86WH2 238 aa5.71□□□□□ -1.5
CD44-217ENST00000525348 CMIPQ8IY22 773 aa5.71□□□□□ -1.5
CD44-217ENST00000525348 D2HGDHQ8N465 521 aa5.71□□□□□ -1.5
CD44-217ENST00000525348 BORCS6Q96GS4 357 aa5.71□□□□□ -1.5
CD44-217ENST00000525348 TTC1Q99614 292 aa5.71□□□□□ -1.5
CD44-217ENST00000525348 IL23AQ9NPF7 189 aa5.71□□□□□ -1.5
CD44-217ENST00000525348 TLR9Q9NR96 1032 aa5.71□□□□□ -1.5
CD44-217ENST00000525348 ING3Q9NXR8 418 aa5.71□□□□□ -1.5
CD44-217ENST00000525348 APOBEC2Q9Y235 224 aaKnown RBP5.71□□□□□ -1.5
CD44-217ENST00000525348 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.7□□□□□ -1.5
CD44-217ENST00000525348 LY86O95711 162 aa5.7□□□□□ -1.5
CD44-217ENST00000525348 KIR2DL3P43628 341 aa5.7□□□□□ -1.5
CD44-217ENST00000525348 PPARAQ07869 468 aa5.7□□□□□ -1.5
CD44-217ENST00000525348 STAT4Q14765 748 aa5.7□□□□□ -1.5
CD44-217ENST00000525348 CT83Q5H943 113 aa5.7□□□□□ -1.5
CD44-217ENST00000525348 CCDC62Q6P9F0 684 aa5.7□□□□□ -1.5
CD44-217ENST00000525348 KRT26Q7Z3Y9 468 aa5.7□□□□□ -1.5
CD44-217ENST00000525348 Q8N1X5 172 aa5.7□□□□□ -1.5
CD44-217ENST00000525348 GAB3Q8WWW8 586 aa5.7□□□□□ -1.5
CD44-217ENST00000525348 EXTL1Q92935 676 aa5.7□□□□□ -1.5
CD44-217ENST00000525348 C14orf93Q9H972 538 aaKnown RBP5.7□□□□□ -1.5
CD44-217ENST00000525348 EVLQ9UI08 416 aaPredicted RBP5.7□□□□□ -1.5
CD44-217ENST00000525348 SYNPO2Q9UMS6 1093 aa5.7□□□□□ -1.5
CD44-217ENST00000525348 NOC2LQ9Y3T9 749 aaKnown RBP5.7□□□□□ -1.5
CD44-217ENST00000525348 NUMBLQ9Y6R0 609 aa5.7□□□□□ -1.5
CD44-217ENST00000525348 GOLGA8BA8MQT2 603 aa5.69□□□□□ -1.5
CD44-217ENST00000525348 DAPK3O43293 454 aa5.69□□□□□ -1.5
CD44-217ENST00000525348 STC2O76061 302 aa5.69□□□□□ -1.5
CD44-217ENST00000525348 FSBPO95073 299 aa5.69□□□□□ -1.5
CD44-217ENST00000525348 CFBP00751 764 aa5.69□□□□□ -1.5
CD44-217ENST00000525348 JUNP05412 331 aaKnown RBP5.69□□□□□ -1.5
CD44-217ENST00000525348 LPLP06858 475 aa5.69□□□□□ -1.5
CD44-217ENST00000525348 KRT40Q6A162 431 aa5.69□□□□□ -1.5
CD44-217ENST00000525348 UNC5BQ8IZJ1 945 aa5.69□□□□□ -1.5
CD44-217ENST00000525348 MSL3Q8N5Y2 521 aaKnown RBP5.69□□□□□ -1.5
CD44-217ENST00000525348 FAM89AQ96GI7 184 aa5.69□□□□□ -1.5
CD44-217ENST00000525348 UIMC1Q96RL1 719 aa5.69□□□□□ -1.5
CD44-217ENST00000525348 ZNF747Q9BV97 191 aa5.69□□□□□ -1.5
CD44-217ENST00000525348 KCTD10Q9H3F6 313 aa5.69□□□□□ -1.5
CD44-217ENST00000525348 PRSS50Q9UI38 385 aa5.69□□□□□ -1.5
CD44-217ENST00000525348 EDARQ9UNE0 448 aa5.69□□□□□ -1.5
CD44-217ENST00000525348 A0A1W2PR48 441 aa5.68□□□□□ -1.5
CD44-217ENST00000525348 CAPN14A8MX76 684 aa5.68□□□□□ -1.5
CD44-217ENST00000525348 MAFGO15525 162 aa5.68□□□□□ -1.5
CD44-217ENST00000525348 MTSS1O43312 755 aa5.68□□□□□ -1.5
CD44-217ENST00000525348 RAB11FIP3O75154 756 aa5.68□□□□□ -1.5
CD44-217ENST00000525348 ALDH1A2O94788 518 aa5.68□□□□□ -1.5
CD44-217ENST00000525348 AMHP03971 560 aa5.68□□□□□ -1.5
CD44-217ENST00000525348 SESN3P58005 492 aa5.68□□□□□ -1.5
CD44-217ENST00000525348 MGAT5Q09328 741 aa5.68□□□□□ -1.5
CD44-217ENST00000525348 MAN2A1Q16706 1144 aa5.68□□□□□ -1.5
CD44-217ENST00000525348 USP39Q53GS9 565 aaKnown RBP5.68□□□□□ -1.5
CD44-217ENST00000525348 FAM111BQ6SJ93 734 aa5.68□□□□□ -1.5
CD44-217ENST00000525348 RNF207Q6ZRF8 634 aa5.68□□□□□ -1.5
CD44-217ENST00000525348 IL17DQ8TAD2 202 aa5.68□□□□□ -1.5
CD44-217ENST00000525348 EAF2Q96CJ1 260 aaPredicted RBP5.68□□□□□ -1.5
CD44-217ENST00000525348 TCF25Q9BQ70 676 aa5.68□□□□□ -1.5
CD44-217ENST00000525348 ENKD1Q9H0I2 346 aa5.68□□□□□ -1.5
CD44-217ENST00000525348 TMEM127O75204 238 aa5.67□□□□□ -1.5
CD44-217ENST00000525348 ULK1O75385 1050 aa5.67□□□□□ -1.5
CD44-217ENST00000525348 ACRV1P26436 265 aa5.67□□□□□ -1.5
CD44-217ENST00000525348 HIBADHP31937 336 aaKnown RBP5.67□□□□□ -1.5
CD44-217ENST00000525348 GPR15P49685 360 aa5.67□□□□□ -1.5
CD44-217ENST00000525348 LGALS4P56470 323 aa5.67□□□□□ -1.5
CD44-217ENST00000525348 DGCR2P98153 550 aa5.67□□□□□ -1.5
CD44-217ENST00000525348 ZXDAP98168 799 aa5.67□□□□□ -1.5
CD44-217ENST00000525348 FAM214AQ32MH5 1076 aa5.67□□□□□ -1.5
CD44-217ENST00000525348 CRIP3Q6Q6R5 217 aa5.67□□□□□ -1.5
CD44-217ENST00000525348 Q6ZRM9 215 aa5.67□□□□□ -1.5
CD44-217ENST00000525348 SGMS1Q86VZ5 419 aa5.67□□□□□ -1.5
CD44-217ENST00000525348 CMTM4Q8IZR5 234 aa5.67□□□□□ -1.5
CD44-217ENST00000525348 MPHOSPH9Q99550 1183 aa5.67□□□□□ -1.5
CD44-217ENST00000525348 WNT8AQ9H1J5 351 aa5.67□□□□□ -1.5
CD44-217ENST00000525348 NCDNQ9UBB6 729 aa5.67□□□□□ -1.5
CD44-217ENST00000525348 RCAN3Q9UKA8 241 aa5.67□□□□□ -1.5
CD44-217ENST00000525348 CDY2AQ9Y6F7 541 aa5.67□□□□□ -1.5
CD44-217ENST00000525348 TMPRSS15P98073 1019 aa5.66□□□□□ -1.5
CD44-217ENST00000525348 SPIDRQ14159 915 aa5.66□□□□□ -1.5
CD44-217ENST00000525348 FSCN1Q16658 493 aaKnown RBP5.66□□□□□ -1.5
CD44-217ENST00000525348 NRN1LQ496H8 165 aa5.66□□□□□ -1.5
CD44-217ENST00000525348 CCDC178Q5BJE1 867 aa5.66□□□□□ -1.5
CD44-217ENST00000525348 CT47A1Q5JQC4 288 aaPredicted RBP5.66□□□□□ -1.5
CD44-217ENST00000525348 C1QL3Q5VWW1 255 aa5.66□□□□□ -1.5
CD44-217ENST00000525348 IGFL4Q6B9Z1 124 aa5.66□□□□□ -1.5
CD44-217ENST00000525348 TAS1R1Q7RTX1 841 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms