RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 CCDC88AQ3V6T2 1871 aa10.98□□□□□ -0.65
MCF2-209ENST00000520602 CHD4Q14839 1912 aa10.98□□□□□ -0.65
MCF2-209ENST00000520602 RNF187Q5TA31 235 aaPredicted RBP10.98□□□□□ -0.65
MCF2-209ENST00000520602 SCYL3Q8IZE3 742 aa10.98□□□□□ -0.65
MCF2-209ENST00000520602 SLC17A8Q8NDX2 589 aa10.98□□□□□ -0.65
MCF2-209ENST00000520602 P2RX7Q99572 595 aaKnown RBP10.98□□□□□ -0.65
MCF2-209ENST00000520602 KIAA1683Q9H0B3 1180 aa10.98□□□□□ -0.65
MCF2-209ENST00000520602 KCND2Q9NZV8 630 aa10.98□□□□□ -0.65
MCF2-209ENST00000520602 MTRF1LQ9UGC7 380 aaKnown RBP10.98□□□□□ -0.65
MCF2-209ENST00000520602 ASIC3Q9UHC3 531 aa10.98□□□□□ -0.65
MCF2-209ENST00000520602 PCDHB4Q9Y5E5 795 aa10.98□□□□□ -0.65
MCF2-209ENST00000520602 ASTN2O75129 1339 aaPredicted RBP10.97□□□□□ -0.65
MCF2-209ENST00000520602 PDE2AO00408 941 aaPredicted RBP10.97□□□□□ -0.65
MCF2-209ENST00000520602 FOXN3O00409 490 aaPredicted RBP10.97□□□□□ -0.65
MCF2-209ENST00000520602 KIF4AO95239 1232 aa10.97□□□□□ -0.65
MCF2-209ENST00000520602 SSTR3P32745 418 aaPredicted RBP10.97□□□□□ -0.65
MCF2-209ENST00000520602 RARRES1P49788 294 aa10.97□□□□□ -0.65
MCF2-209ENST00000520602 SNRNP35Q16560 246 aaKnown RBP10.97□□□□□ -0.65
MCF2-209ENST00000520602 LIN9Q5TKA1 542 aa10.97□□□□□ -0.65
MCF2-209ENST00000520602 FKBP1CQ5VVH2 108 aa10.97□□□□□ -0.65
MCF2-209ENST00000520602 DCUN1D2Q6PH85 259 aa10.97□□□□□ -0.65
MCF2-209ENST00000520602 AGO4Q9HCK5 861 aaKnown RBP10.97□□□□□ -0.65
MCF2-209ENST00000520602 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.97□□□□□ -0.65
MCF2-209ENST00000520602 CEP83Q9Y592 693 aa10.97□□□□□ -0.65
MCF2-209ENST00000520602 H0YCG3 227 aa10.97□□□□□ -0.65
MCF2-209ENST00000520602 IVLP07476 585 aa10.97□□□□□ -0.65
MCF2-209ENST00000520602 NSFP46459 744 aaKnown RBP10.97□□□□□ -0.65
MCF2-209ENST00000520602 ACOT2P49753 483 aa10.97□□□□□ -0.65
MCF2-209ENST00000520602 SF3A3Q12874 501 aaKnown RBP eCLIP10.97□□□□□ -0.65
MCF2-209ENST00000520602 KRT71Q3SY84 523 aa10.97□□□□□ -0.65
MCF2-209ENST00000520602 KRT39Q6A163 491 aa10.97□□□□□ -0.65
MCF2-209ENST00000520602 CCNI2Q6ZMN8 369 aaPredicted RBP10.97□□□□□ -0.65
MCF2-209ENST00000520602 CBWD2Q8IUF1 395 aa10.97□□□□□ -0.65
MCF2-209ENST00000520602 MSTO1Q9BUK6 570 aa10.97□□□□□ -0.65
MCF2-209ENST00000520602 MOV10L1Q9BXT6 1211 aaKnown RBP10.97□□□□□ -0.65
MCF2-209ENST00000520602 KCNG1Q9UIX4 513 aa10.97□□□□□ -0.65
MCF2-209ENST00000520602 USP20Q9Y2K6 914 aa10.97□□□□□ -0.65
MCF2-209ENST00000520602 IVNS1ABPQ9Y6Y0 642 aa10.97□□□□□ -0.65
MCF2-209ENST00000520602 FDX1P10109 184 aa10.97□□□□□ -0.65
MCF2-209ENST00000520602 RPS12P25398 132 aaKnown RBP10.97□□□□□ -0.65
MCF2-209ENST00000520602 CNGA1P29973 690 aa10.97□□□□□ -0.65
MCF2-209ENST00000520602 PPP2R5AQ15172 486 aa10.97□□□□□ -0.65
MCF2-209ENST00000520602 ZNF394Q53GI3 561 aa10.97□□□□□ -0.65
MCF2-209ENST00000520602 SLC35G2Q8TBE7 412 aa10.97□□□□□ -0.65
MCF2-209ENST00000520602 POP1Q99575 1024 aaKnown RBP10.97□□□□□ -0.65
MCF2-209ENST00000520602 SELENOSQ9BQE4 189 aa10.97□□□□□ -0.65
MCF2-209ENST00000520602 MKNK1Q9BUB5 465 aa10.97□□□□□ -0.65
MCF2-209ENST00000520602 ZNF302Q9NR11 478 aa10.97□□□□□ -0.65
MCF2-209ENST00000520602 CD58P19256 250 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 NOVP48745 357 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 TGFB2P61812 414 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 TFAMQ00059 246 aaKnown RBP10.96□□□□□ -0.65
MCF2-209ENST00000520602 PGM5Q15124 567 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 COBLL1Q53SF7 1204 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 BRDTQ58F21 947 aaPredicted RBP10.96□□□□□ -0.65
MCF2-209ENST00000520602 ZBTB8OSQ8IWT0 167 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 MSANTD4Q8NCY6 345 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 HDAC7Q8WUI4 952 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 LENG9Q96B70 501 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 AGPAT1Q99943 283 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 TTYH3Q9C0H2 523 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 L1RE1Q9UN81 338 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 MYO1FO00160 1098 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 VWA5AO00534 786 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 ATP9AO75110 1047 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 EGFRP00533 1210 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 MYZAPP0CAP1 466 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 PLTPP55058 493 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 SNX1Q13596 522 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 EPC2Q52LR7 807 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 FAM160B1Q5W0V3 765 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 PCNX4Q63HM2 1172 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 DPY19L2Q6NUT2 758 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 PASD1Q8IV76 773 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 NLRP4Q96MN2 994 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 CAMKK2Q96RR4 588 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 PI4K2AQ9BTU6 479 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 RAB17Q9H0T7 212 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 PLCB1Q9NQ66 1216 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 PXMP2Q9NR77 195 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 AMACRQ9UHK6 382 aa10.96□□□□□ -0.65
MCF2-209ENST00000520602 ASTN1O14525 1302 aa10.96□□□□□ -0.66
MCF2-209ENST00000520602 MAPK4P31152 587 aa10.96□□□□□ -0.66
MCF2-209ENST00000520602 GNGT1P63211 74 aa10.96□□□□□ -0.66
MCF2-209ENST00000520602 PRKCEQ02156 737 aa10.96□□□□□ -0.66
MCF2-209ENST00000520602 ZCWPW2Q504Y3 356 aa10.96□□□□□ -0.66
MCF2-209ENST00000520602 SLC30A5Q8TAD4 765 aa10.96□□□□□ -0.66
MCF2-209ENST00000520602 TLR10Q9BXR5 811 aa10.96□□□□□ -0.66
MCF2-209ENST00000520602 ELP3Q9H9T3 547 aa10.96□□□□□ -0.66
MCF2-209ENST00000520602 AIPL1Q9NZN9 384 aa10.96□□□□□ -0.66
MCF2-209ENST00000520602 IGLV3-22A0A075B6J6 115 aa10.95□□□□□ -0.66
MCF2-209ENST00000520602 TGFB1I1O43294 461 aa10.95□□□□□ -0.66
MCF2-209ENST00000520602 ATP2C2O75185 946 aa10.95□□□□□ -0.66
MCF2-209ENST00000520602 TMOD1P28289 359 aa10.95□□□□□ -0.66
MCF2-209ENST00000520602 CBWD6Q4V339 395 aa10.95□□□□□ -0.66
MCF2-209ENST00000520602 CBWD3Q5JTY5 395 aa10.95□□□□□ -0.66
MCF2-209ENST00000520602 CBWD5Q5RIA9 395 aa10.95□□□□□ -0.66
MCF2-209ENST00000520602 THNSL1Q8IYQ7 743 aa10.95□□□□□ -0.66
MCF2-209ENST00000520602 RFFLQ8WZ73 363 aa10.95□□□□□ -0.66
MCF2-209ENST00000520602 SLC38A10Q9HBR0 1119 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms