RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 MED24O75448 989 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 ERLIN2O94905 339 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 SMARCA1P28370 1054 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 TCTN1Q2MV58 587 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 TMCO4Q5TGY1 634 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 IER5Q5VY09 327 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 TRIM74Q86UV6 250 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 TRIM73Q86UV7 250 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 ST3GAL5Q9UNP4 418 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 NOC2LQ9Y3T9 749 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 TULP2O00295 520 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 PER2O15055 1255 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 DHX15O43143 795 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 EDIL3O43854 480 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 HBP1O60381 514 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 ZC3H11AO75152 810 aaKnown RBP eCLIP8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 ARHGEF15O94989 841 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 POMCP01189 267 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 CHRNA1P02708 482 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 NEFHP12036 1026 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 MTHFD1LQ6UB35 978 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 ABHD15Q6UXT9 468 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 GBP6Q6ZN66 633 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 ATP8B4Q8TF62 1192 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 USP28Q96RU2 1077 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 SENP7Q9BQF6 1050 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 C17orf80Q9BSJ5 609 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 ZNF576Q9H609 170 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 NRBP1Q9UHY1 535 aa8.68□□□□□ -1.02
LIMCH1-219ENST00000514096 AKAP5P24588 427 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 CLK2P49760 499 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 USP11P51784 963 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 NAA30Q147X3 362 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 ANO5Q75V66 913 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 MYLK4Q86YV6 388 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 DHX58Q96C10 678 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 FAM84AQ96KN4 292 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 CENPHQ9H3R5 247 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 IL23AQ9NPF7 189 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 MED4Q9NPJ6 270 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 MAPK8IP1Q9UQF2 711 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 NRCAMQ92823 1304 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 THSD7BQ9C0I4 1608 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 NRDCO43847 1150 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 RANBP1P43487 201 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 TOB1P50616 345 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 PEX3P56589 373 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 TFF2Q03403 129 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 LAMA4Q16363 1823 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 PPP4R3AQ6IN85 833 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 DRC7Q8IY82 874 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 THNSL1Q8IYQ7 743 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 RDH13Q8NBN7 331 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 AUTS2Q8WXX7 1259 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 SEPT8Q92599 483 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 HPS3Q969F9 1004 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 H3BQ06 376 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 hCG_1984214I3L0E3 225 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 B4GALT5O43286 388 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 CDK7P50613 346 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 PSMC5P62195 406 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 ZC3H12AQ5D1E8 599 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 ZNF280DQ6N043 979 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 LEKR1Q6ZMV7 388 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 CATSPER3Q86XQ3 398 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 TMEM130Q8N3G9 435 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 ZNF713Q8N859 430 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 BORCS6Q96GS4 357 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 IKZF4Q9H2S9 585 aa8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 YBX2Q9Y2T7 364 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-219ENST00000514096 KIAA1217Q5T5P2 1943 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 CTNNB1P35222 781 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 ARPP19P56211 112 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 ZSCAN26Q16670 478 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 LLGL2Q6P1M3 1020 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 TSHZ1Q6ZSZ6 1077 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 CEP57Q86XR8 500 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 GRAMD1CQ8IYS0 662 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 KIAA0319LQ8IZA0 1049 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 CCDC155Q8N6L0 562 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 UPF3AQ9H1J1 476 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 BLZF1Q9H2G9 400 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 MAP3K20Q9NYL2 800 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 LCMT1Q9UIC8 334 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 PSMD10O75832 226 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 SMC2O95347 1197 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 P4HBP07237 508 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 ANKRD33Q7Z3H0 272 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 KIF18AQ8NI77 898 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 ERMNQ8TAM6 284 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 POLR3FQ9H1D9 316 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 ZSWIM4Q9H7M6 989 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 SH3GLB2Q9NR46 395 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 RPS6KL1Q9Y6S9 549 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 EP300Q09472 2414 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 ESYT2A0FGR8 921 aa8.66□□□□□ -1.02
LIMCH1-219ENST00000514096 KPNA6O60684 536 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms