RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 TSPAN1O60635 241 aa10.78□□□□□ -0.68
RNF4-221ENST00000513643 USO1O60763 962 aaKnown RBP10.78□□□□□ -0.68
RNF4-221ENST00000513643 FGFR1P11362 822 aa10.78□□□□□ -0.68
RNF4-221ENST00000513643 PDIA4P13667 645 aaKnown RBP10.78□□□□□ -0.68
RNF4-221ENST00000513643 AXLP30530 894 aa10.78□□□□□ -0.68
RNF4-221ENST00000513643 GRIN1Q05586 938 aa10.78□□□□□ -0.68
RNF4-221ENST00000513643 MAPK7Q13164 816 aa10.78□□□□□ -0.68
RNF4-221ENST00000513643 BTG3Q14201 252 aaPredicted RBP10.78□□□□□ -0.68
RNF4-221ENST00000513643 FAM187BQ17R55 369 aa10.78□□□□□ -0.68
RNF4-221ENST00000513643 CLLU1OSQ5K130 101 aa10.78□□□□□ -0.68
RNF4-221ENST00000513643 RINT1Q6NUQ1 792 aa10.78□□□□□ -0.68
RNF4-221ENST00000513643 PPP4R3CPQ6ZMV5 832 aa10.78□□□□□ -0.68
RNF4-221ENST00000513643 FBXO22Q8NEZ5 403 aa10.78□□□□□ -0.68
RNF4-221ENST00000513643 GDPD5Q8WTR4 605 aa10.78□□□□□ -0.68
RNF4-221ENST00000513643 RSPH1Q8WYR4 309 aa10.78□□□□□ -0.68
RNF4-221ENST00000513643 MRPL38Q96DV4 380 aaKnown RBP10.78□□□□□ -0.68
RNF4-221ENST00000513643 NTPCRQ9BSD7 190 aaKnown RBP10.78□□□□□ -0.68
RNF4-221ENST00000513643 CCDC113Q9H0I3 377 aa10.78□□□□□ -0.68
RNF4-221ENST00000513643 POLR3FQ9H1D9 316 aaPredicted RBP10.78□□□□□ -0.68
RNF4-221ENST00000513643 ZSCAN16Q9H4T2 348 aaPredicted RBP10.78□□□□□ -0.68
RNF4-221ENST00000513643 PLAGL2Q9UPG8 496 aa10.78□□□□□ -0.68
RNF4-221ENST00000513643 DNM3Q9UQ16 869 aa10.78□□□□□ -0.68
RNF4-221ENST00000513643 CLIC4Q9Y696 253 aa10.78□□□□□ -0.68
RNF4-221ENST00000513643 ARID2Q68CP9 1835 aa10.77□□□□□ -0.68
RNF4-221ENST00000513643 VPS37CA5D8V6 355 aaPredicted RBP10.77□□□□□ -0.69
RNF4-221ENST00000513643 ARHGEF35A5YM69 484 aa10.77□□□□□ -0.69
RNF4-221ENST00000513643 VWA3AA6NCI4 1184 aa10.77□□□□□ -0.69
RNF4-221ENST00000513643 HOXA2O43364 376 aa10.77□□□□□ -0.69
RNF4-221ENST00000513643 SKIP12755 728 aa10.77□□□□□ -0.69
RNF4-221ENST00000513643 IGFBP4P22692 258 aa10.77□□□□□ -0.69
RNF4-221ENST00000513643 GUCY2CP25092 1073 aa10.77□□□□□ -0.69
RNF4-221ENST00000513643 LONP1P36776 959 aaKnown RBP10.77□□□□□ -0.69
RNF4-221ENST00000513643 NASPP49321 788 aaPredicted RBP10.77□□□□□ -0.69
RNF4-221ENST00000513643 SLC12A3P55017 1021 aa10.77□□□□□ -0.69
RNF4-221ENST00000513643 TFDP1Q14186 410 aa10.77□□□□□ -0.69
RNF4-221ENST00000513643 SLC39A14Q15043 492 aa10.77□□□□□ -0.69
RNF4-221ENST00000513643 FAM173BQ6P4H8 233 aa10.77□□□□□ -0.69
RNF4-221ENST00000513643 CATSPER4Q7RTX7 472 aa10.77□□□□□ -0.69
RNF4-221ENST00000513643 SYT2Q8N9I0 419 aaPredicted RBP10.77□□□□□ -0.69
RNF4-221ENST00000513643 SMG8Q8ND04 991 aaKnown RBP10.77□□□□□ -0.69
RNF4-221ENST00000513643 SPPL3Q8TCT6 385 aa10.77□□□□□ -0.69
RNF4-221ENST00000513643 CCDC51Q96ER9 411 aa10.77□□□□□ -0.69
RNF4-221ENST00000513643 SCLT1Q96NL6 688 aa10.77□□□□□ -0.69
RNF4-221ENST00000513643 CCSER1Q9C0I3 900 aa10.77□□□□□ -0.69
RNF4-221ENST00000513643 FAM105AQ9NUU6 356 aa10.77□□□□□ -0.69
RNF4-221ENST00000513643 TYW1Q9NV66 732 aaKnown RBP10.77□□□□□ -0.69
RNF4-221ENST00000513643 FBXO2Q9UK22 296 aaPredicted RBP10.77□□□□□ -0.69
RNF4-221ENST00000513643 MTUS1Q9ULD2 1270 aa10.77□□□□□ -0.69
RNF4-221ENST00000513643 LRFN2Q9ULH4 789 aa10.77□□□□□ -0.69
RNF4-221ENST00000513643 PIN4Q9Y237 131 aaKnown RBP10.77□□□□□ -0.69
RNF4-221ENST00000513643 SRPRBQ9Y5M8 271 aaKnown RBP10.77□□□□□ -0.69
RNF4-221ENST00000513643 BDP1A6H8Y1 2624 aa10.77□□□□□ -0.69
RNF4-221ENST00000513643 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.76□□□□□ -0.69
RNF4-221ENST00000513643 TBKBP1A7MCY6 615 aa10.76□□□□□ -0.69
RNF4-221ENST00000513643 MEIS3P2A8K0S8 358 aa10.76□□□□□ -0.69
RNF4-221ENST00000513643 GRM6O15303 877 aa10.76□□□□□ -0.69
RNF4-221ENST00000513643 GTPBP6O43824 516 aaPredicted RBP10.76□□□□□ -0.69
RNF4-221ENST00000513643 OFD1O75665 1012 aa10.76□□□□□ -0.69
RNF4-221ENST00000513643 ITGB1P05556 798 aa10.76□□□□□ -0.69
RNF4-221ENST00000513643 ARF4P18085 180 aaPredicted RBP10.76□□□□□ -0.69
RNF4-221ENST00000513643 NCLP19338 710 aaKnown RBP10.76□□□□□ -0.69
RNF4-221ENST00000513643 DNAJB1P25685 340 aa10.76□□□□□ -0.69
RNF4-221ENST00000513643 NAMPTP43490 491 aa10.76□□□□□ -0.69
RNF4-221ENST00000513643 RAB27AP51159 221 aa10.76□□□□□ -0.69
RNF4-221ENST00000513643 GPM6BQ13491 265 aa10.76□□□□□ -0.69
RNF4-221ENST00000513643 ARSHQ5FYA8 562 aa10.76□□□□□ -0.69
RNF4-221ENST00000513643 AGMOQ6ZNB7 445 aa10.76□□□□□ -0.69
RNF4-221ENST00000513643 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.76□□□□□ -0.69
RNF4-221ENST00000513643 KIFAP3Q92845 792 aa10.76□□□□□ -0.69
RNF4-221ENST00000513643 PRIMPOLQ96LW4 560 aa10.76□□□□□ -0.69
RNF4-221ENST00000513643 USP28Q96RU2 1077 aa10.76□□□□□ -0.69
RNF4-221ENST00000513643 C11orf84Q9BUA3 381 aaPredicted RBP10.76□□□□□ -0.69
RNF4-221ENST00000513643 RUSC1Q9BVN2 902 aa10.76□□□□□ -0.69
RNF4-221ENST00000513643 NT5C3AQ9H0P0 336 aa10.76□□□□□ -0.69
RNF4-221ENST00000513643 LMAN2LQ9H0V9 348 aa10.76□□□□□ -0.69
RNF4-221ENST00000513643 PRDM6Q9NQX0 595 aa10.76□□□□□ -0.69
RNF4-221ENST00000513643 FOXD4L1Q9NU39 408 aa10.76□□□□□ -0.69
RNF4-221ENST00000513643 BLOC1S4Q9NUP1 217 aa10.76□□□□□ -0.69
RNF4-221ENST00000513643 HCSTQ9UBK5 93 aa10.76□□□□□ -0.69
RNF4-221ENST00000513643 DAXXQ9UER7 740 aaPredicted RBP10.76□□□□□ -0.69
RNF4-221ENST00000513643 PCDHB2Q9Y5E7 798 aa10.76□□□□□ -0.69
RNF4-221ENST00000513643 FNDC1Q4ZHG4 1894 aaPredicted RBP10.76□□□□□ -0.69
RNF4-221ENST00000513643 TTLL13PA6NNM8 815 aa10.75□□□□□ -0.69
RNF4-221ENST00000513643 INO80B-WBP1J3KQ70 363 aa10.75□□□□□ -0.69
RNF4-221ENST00000513643 ACKR2O00590 384 aa10.75□□□□□ -0.69
RNF4-221ENST00000513643 B4GALT5O43286 388 aa10.75□□□□□ -0.69
RNF4-221ENST00000513643 EDN1P05305 212 aa10.75□□□□□ -0.69
RNF4-221ENST00000513643 CTNNB1P35222 781 aa10.75□□□□□ -0.69
RNF4-221ENST00000513643 PLCB3Q01970 1234 aa10.75□□□□□ -0.69
RNF4-221ENST00000513643 TWF2Q6IBS0 349 aaKnown RBP10.75□□□□□ -0.69
RNF4-221ENST00000513643 USP49Q70CQ1 688 aa10.75□□□□□ -0.69
RNF4-221ENST00000513643 MAEAQ7L5Y9 396 aa10.75□□□□□ -0.69
RNF4-221ENST00000513643 CABP7Q86V35 215 aa10.75□□□□□ -0.69
RNF4-221ENST00000513643 HSCBQ8IWL3 235 aa10.75□□□□□ -0.69
RNF4-221ENST00000513643 KLHL23Q8NBE8 558 aa10.75□□□□□ -0.69
RNF4-221ENST00000513643 LINC00301Q8NCQ3 95 aa10.75□□□□□ -0.69
RNF4-221ENST00000513643 SLC17A8Q8NDX2 589 aa10.75□□□□□ -0.69
RNF4-221ENST00000513643 TIPINQ9BVW5 301 aa10.75□□□□□ -0.69
RNF4-221ENST00000513643 EIF2AQ9BY44 585 aaKnown RBP10.75□□□□□ -0.69
RNF4-221ENST00000513643 CSRNP2Q9H175 543 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms