RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 TOMM22Q9NS69 142 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 HACL1Q9UJ83 578 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 KIF3AQ9Y496 699 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 PCDHB3Q9Y5E6 796 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 CNTNAP1P78357 1384 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 ROBO3Q96MS0 1386 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 LAMA4Q16363 1823 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 ST18O60284 1047 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 ADAMTS4O75173 837 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 PRDM1O75626 825 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 DGKIO75912 1065 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 CPP00450 1065 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 HLA-DOAP06340 250 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 AKR1B1P15121 316 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 SOX5P35711 763 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 GBE1Q04446 702 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 PSMD6Q15008 389 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 SLC9B2Q86UD5 537 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 FAM83AQ86UY5 434 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 SPATA2LQ8IUW3 424 aaPredicted RBP10.55□□□□□ -0.72
USP53-207ENST00000510852 LURAP1LQ8IV03 231 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 COLGALT2Q8IYK4 626 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 SPERTQ8NA61 448 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 ZNF280CQ8ND82 737 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 CCDC148Q8NFR7 591 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 UTP15Q8TED0 518 aaKnown RBP10.55□□□□□ -0.72
USP53-207ENST00000510852 FAM151AQ8WW52 585 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 TNIP3Q96KP6 325 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 TCEANC2Q96MN5 208 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 NAA15Q9BXJ9 866 aaKnown RBP10.55□□□□□ -0.72
USP53-207ENST00000510852 KRT23Q9C075 422 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 PICK1Q9NRD5 415 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 VPS45Q9NRW7 570 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 SH3BGRL2Q9UJC5 107 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 SCAF8Q9UPN6 1271 aaKnown RBP10.55□□□□□ -0.72
USP53-207ENST00000510852 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.55□□□□□ -0.72
USP53-207ENST00000510852 DDX60LQ5H9U9 1706 aaKnown RBP10.55□□□□□ -0.72
USP53-207ENST00000510852 FOCADQ5VW36 1801 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 PDPK1O15530 556 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 MX2P20592 715 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 CTCFP49711 727 aaPredicted RBP10.55□□□□□ -0.72
USP53-207ENST00000510852 OASLQ15646 514 aaKnown RBP10.55□□□□□ -0.72
USP53-207ENST00000510852 GBP6Q6ZN66 633 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 CHST3Q7LGC8 479 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 SLC44A5Q8NCS7 719 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 VCPKMTQ9H867 229 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 ZNF624Q9P2J8 865 aaPredicted RBP10.55□□□□□ -0.72
USP53-207ENST00000510852 DKK3Q9UBP4 350 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 ECM29Q5VYK3 1845 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 ATRNL1Q5VV63 1379 aa10.55□□□□□ -0.72
USP53-207ENST00000510852 GABRDO14764 452 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 NDUFB5O43674 189 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 TLR5O60602 858 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 CYP11A1P05108 521 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 P4HA1P13674 534 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 MCM5P33992 734 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 USP8P40818 1118 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 CDK8P49336 464 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 GJA9P57773 515 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 ANTXR2P58335 489 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 NUCB2P80303 420 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 GABPAQ06546 454 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 NAA30Q147X3 362 aaPredicted RBP10.54□□□□□ -0.72
USP53-207ENST00000510852 MAJINQ3KP22 176 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 ANGEL2Q5VTE6 544 aaKnown RBP10.54□□□□□ -0.72
USP53-207ENST00000510852 CYB5R4Q7L1T6 521 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 IL17RDQ8NFM7 739 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 THOC1Q96FV9 657 aaKnown RBP10.54□□□□□ -0.72
USP53-207ENST00000510852 CCDC114Q96M63 670 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 LRRC2Q9BYS8 371 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 TMEM39BQ9GZU3 492 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 MKNK2Q9HBH9 465 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 ZSWIM5Q9P217 1185 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 PI4KBQ9UBF8 816 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 SERPINB13Q9UIV8 391 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 ZBTB21Q9ULJ3 1066 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 CRYL1Q9Y2S2 319 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 TNKSO95271 1327 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 PNMA6FA0A0J9YX94 578 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 RANBP6O60518 1105 aaKnown RBP10.54□□□□□ -0.72
USP53-207ENST00000510852 TRIM21P19474 475 aaKnown RBP10.54□□□□□ -0.72
USP53-207ENST00000510852 EPHX2P34913 555 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 TM4SF4P48230 202 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 AP3B2Q13367 1082 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 TNFAIP1Q13829 316 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 CBX2Q14781 532 aaPredicted RBP10.54□□□□□ -0.72
USP53-207ENST00000510852 SLC14A2Q15849 920 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 MEI1Q5TIA1 1274 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 LIN54Q6MZP7 749 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 SH3RF1Q7Z6J0 888 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 ZNF619Q8N2I2 560 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 GOLGA5Q8TBA6 731 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 ESR2Q92731 530 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 NINJ1Q92982 152 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 CSRNP1Q96S65 589 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 RMDN3Q96TC7 470 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 SLC26A6Q9BXS9 759 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 EHD4Q9H223 541 aa10.54□□□□□ -0.72
USP53-207ENST00000510852 COL2A1P02458 1487 aaPredicted RBP10.53□□□□□ -0.72
USP53-207ENST00000510852 POTECB2RU33 542 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms