RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 ADCY9O60503 1353 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 KLHL33A6NCF5 533 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 CDC40O60508 579 aaKnown RBP eCLIP3.8□□□□□ -1.8
USP53-205ENST00000509769 KATNA1O75449 491 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 SMNDC1O75940 238 aaKnown RBP eCLIP3.8□□□□□ -1.8
USP53-205ENST00000509769 WFS1O76024 890 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 PDE6AP16499 860 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 ITGAXP20702 1163 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 RPL26P61254 145 aaKnown RBP3.8□□□□□ -1.8
USP53-205ENST00000509769 VBP1P61758 197 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 PSMC6P62333 389 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 CCZ1BP86790 482 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 CCZ1P86791 482 aaPredicted RBP3.8□□□□□ -1.8
USP53-205ENST00000509769 LRRC63Q05C16 580 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 SPIRE1Q08AE8 756 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 PAK1Q13153 545 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 BYSLQ13895 437 aaKnown RBP3.8□□□□□ -1.8
USP53-205ENST00000509769 POSTNQ15063 836 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 ANO4Q32M45 955 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 TWISTNBQ3B726 338 aaPredicted RBP3.8□□□□□ -1.8
USP53-205ENST00000509769 RSBN1Q5VWQ0 802 aaPredicted RBP3.8□□□□□ -1.8
USP53-205ENST00000509769 NAIF1Q69YI7 327 aaPredicted RBP3.8□□□□□ -1.8
USP53-205ENST00000509769 EFL1Q7Z2Z2 1120 aaKnown RBP3.8□□□□□ -1.8
USP53-205ENST00000509769 FAM45AQ8TCE6 357 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 BORCS5Q969J3 196 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 ATP6V1G3Q96LB4 118 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 PITPNM3Q9BZ71 974 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 ROPN1BQ9BZX4 212 aaPredicted RBP3.8□□□□□ -1.8
USP53-205ENST00000509769 KLC2Q9H0B6 622 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 VCPKMTQ9H867 229 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 ROPN1Q9HAT0 212 aaPredicted RBP3.8□□□□□ -1.8
USP53-205ENST00000509769 BTG4Q9NY30 223 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 STRIP2Q9ULQ0 834 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 MTO1Q9Y2Z2 717 aaKnown RBP3.8□□□□□ -1.8
USP53-205ENST00000509769 UTP18Q9Y5J1 556 aaKnown RBP eCLIP3.8□□□□□ -1.8
USP53-205ENST00000509769 PRAG1Q86YV5 1406 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 ADGRA2Q96PE1 1338 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 H7C1D1 291 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 M0QX08 132 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 PGRMC1O00264 195 aaKnown RBP3.8□□□□□ -1.8
USP53-205ENST00000509769 IGSF3O75054 1194 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 TNFAIP8O95379 198 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 ZBED1O96006 694 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 TAC1P20366 129 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 RCVRNP35243 200 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 TRIM23P36406 574 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 ARL1P40616 181 aaPredicted RBP3.8□□□□□ -1.8
USP53-205ENST00000509769 MSH2P43246 934 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 CEBPGP53567 150 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 AP3S2P59780 193 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 COPZ1P61923 177 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 GFPT1Q06210 699 aaPredicted RBP3.8□□□□□ -1.8
USP53-205ENST00000509769 EXOSC9Q06265 439 aaKnown RBP3.8□□□□□ -1.8
USP53-205ENST00000509769 TBC1D8BQ0IIM8 1120 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 MORC3Q14149 939 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 KIF22Q14807 665 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 SGSM1Q2NKQ1 1148 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 TYSND1Q2T9J0 566 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 ZNF568Q3ZCX4 644 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 ZC3H12BQ5HYM0 836 aaKnown RBP3.8□□□□□ -1.8
USP53-205ENST00000509769 C11orf74Q86VG3 221 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 KLHL7Q8IXQ5 586 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 TSPYL6Q8N831 410 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 TTLL11Q8NHH1 800 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 AFG1LQ8WV93 481 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 DHX38Q92620 1227 aaKnown RBP3.8□□□□□ -1.8
USP53-205ENST00000509769 RPS6KC1Q96S38 1066 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 RSPH9Q9H1X1 276 aaPredicted RBP3.8□□□□□ -1.8
USP53-205ENST00000509769 CBX8Q9HC52 389 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 EHD3Q9NZN3 535 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 CRNNQ9UBG3 495 aaPredicted RBP3.8□□□□□ -1.8
USP53-205ENST00000509769 SOX13Q9UN79 622 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 BAIAP2Q9UQB8 552 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 TMA7Q9Y2S6 64 aaKnown RBP3.8□□□□□ -1.8
USP53-205ENST00000509769 PARP3Q9Y6F1 533 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 USP6P35125 1406 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 BRWD3Q6RI45 1802 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP3.79□□□□□ -1.8
USP53-205ENST00000509769 CFAP99D6REC4 459 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 F8VZ95 297 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 KRIT1O00522 736 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 ECE2O60344 883 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 RPS6KA5O75582 802 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 FAM107AO95990 144 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 KRT19P08727 400 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 CYP19A1P11511 503 aaPredicted RBP3.79□□□□□ -1.8
USP53-205ENST00000509769 CHRNA3P32297 505 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 PTGER2P43116 358 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 YAP1P46937 504 aaKnown RBP3.79□□□□□ -1.8
USP53-205ENST00000509769 C21orf59P57076 290 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 BPIFB4P59827 614 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 SSTP61278 116 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 EIF5AP63241 154 aaKnown RBP3.79□□□□□ -1.8
USP53-205ENST00000509769 CSTF3Q12996 717 aaKnown RBP3.79□□□□□ -1.8
USP53-205ENST00000509769 ARHGEF6Q15052 776 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 PLCL1Q15111 1095 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 C5orf22Q49AR2 442 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 ANO1Q5XXA6 986 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 RAPH1Q70E73 1250 aa3.79□□□□□ -1.8
USP53-205ENST00000509769 KIAA0825Q8IV33 1275 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms