RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 AGPAT5Q9NUQ2 364 aa16.1■□□□□ 0.17
HMGCS1-203ENST00000507004 KANSL3Q9P2N6 904 aa16.1■□□□□ 0.17
HMGCS1-203ENST00000507004 CNTNAP2Q9UHC6 1331 aa16.1■□□□□ 0.17
HMGCS1-203ENST00000507004 TMEM150BA6NC51 233 aa16.09■□□□□ 0.17
HMGCS1-203ENST00000507004 PRR33A8MZF0 331 aa16.09■□□□□ 0.17
HMGCS1-203ENST00000507004 CSPG5O95196 566 aa16.09■□□□□ 0.17
HMGCS1-203ENST00000507004 ATF7P17544 494 aaPredicted RBP16.09■□□□□ 0.17
HMGCS1-203ENST00000507004 HMGN5P82970 282 aaKnown RBP16.09■□□□□ 0.17
HMGCS1-203ENST00000507004 SMC1AQ14683 1233 aaKnown RBP16.09■□□□□ 0.17
HMGCS1-203ENST00000507004 EMC2Q15006 297 aa16.09■□□□□ 0.17
HMGCS1-203ENST00000507004 LRRC55Q6ZSA7 311 aa16.09■□□□□ 0.17
HMGCS1-203ENST00000507004 TMC7Q7Z402 723 aa16.09■□□□□ 0.17
HMGCS1-203ENST00000507004 RBM23Q86U06 439 aaKnown RBP16.09■□□□□ 0.17
HMGCS1-203ENST00000507004 FERMT3Q86UX7 667 aa16.09■□□□□ 0.17
HMGCS1-203ENST00000507004 TPH2Q8IWU9 490 aa16.09■□□□□ 0.17
HMGCS1-203ENST00000507004 SLC39A11Q8N1S5 342 aa16.09■□□□□ 0.17
HMGCS1-203ENST00000507004 URGCPQ8TCY9 931 aa16.09■□□□□ 0.17
HMGCS1-203ENST00000507004 HELQQ8TDG4 1101 aa16.09■□□□□ 0.17
HMGCS1-203ENST00000507004 PRPF31Q8WWY3 499 aaKnown RBP16.09■□□□□ 0.17
HMGCS1-203ENST00000507004 DYDC2Q96IM9 177 aa16.09■□□□□ 0.17
HMGCS1-203ENST00000507004 SH2D3AQ9BRG2 576 aa16.09■□□□□ 0.17
HMGCS1-203ENST00000507004 TTC12Q9H892 705 aaPredicted RBP16.09■□□□□ 0.17
HMGCS1-203ENST00000507004 IFT122Q9HBG6 1241 aa16.09■□□□□ 0.17
HMGCS1-203ENST00000507004 GJB4Q9NTQ9 266 aa16.09■□□□□ 0.17
HMGCS1-203ENST00000507004 CLEC1BQ9P126 229 aa16.09■□□□□ 0.17
HMGCS1-203ENST00000507004 ATG2AQ2TAZ0 1938 aa16.09■□□□□ 0.17
HMGCS1-203ENST00000507004 BTBD18B2RXH4 712 aa16.08■□□□□ 0.16
HMGCS1-203ENST00000507004 LINC01565O15544 149 aa16.08■□□□□ 0.16
HMGCS1-203ENST00000507004 ERLIN2O94905 339 aa16.08■□□□□ 0.16
HMGCS1-203ENST00000507004 SLITRK3O94933 977 aa16.08■□□□□ 0.16
HMGCS1-203ENST00000507004 FGFR4P22455 802 aa16.08■□□□□ 0.16
HMGCS1-203ENST00000507004 GTF2F1P35269 517 aaKnown RBP eCLIP16.08■□□□□ 0.16
HMGCS1-203ENST00000507004 ERVFC1P60507 584 aa16.08■□□□□ 0.16
HMGCS1-203ENST00000507004 LAMTOR4Q0VGL1 99 aa16.08■□□□□ 0.16
HMGCS1-203ENST00000507004 NOMO2Q5JPE7 1267 aa16.08■□□□□ 0.16
HMGCS1-203ENST00000507004 EARS2Q5JPH6 523 aaKnown RBP16.08■□□□□ 0.16
HMGCS1-203ENST00000507004 IFNLR1Q8IU57 520 aaPredicted RBP16.08■□□□□ 0.16
HMGCS1-203ENST00000507004 HACE1Q8IYU2 909 aa16.08■□□□□ 0.16
HMGCS1-203ENST00000507004 CASP10Q92851 521 aa16.08■□□□□ 0.16
HMGCS1-203ENST00000507004 HSD17B14Q9BPX1 270 aa16.08■□□□□ 0.16
HMGCS1-203ENST00000507004 EIF2AK1Q9BQI3 630 aaKnown RBP16.08■□□□□ 0.16
HMGCS1-203ENST00000507004 SH2B1Q9NRF2 756 aaPredicted RBP16.08■□□□□ 0.16
HMGCS1-203ENST00000507004 RGL1Q9NZL6 768 aa16.08■□□□□ 0.16
HMGCS1-203ENST00000507004 PLXNA4Q9HCM2 1894 aa16.08■□□□□ 0.16
HMGCS1-203ENST00000507004 LARGE1O95461 756 aa16.07■□□□□ 0.16
HMGCS1-203ENST00000507004 BCAR1P56945 870 aa16.07■□□□□ 0.16
HMGCS1-203ENST00000507004 CYP4A11Q02928 519 aa16.07■□□□□ 0.16
HMGCS1-203ENST00000507004 RNASELQ05823 741 aaKnown RBP16.07■□□□□ 0.16
HMGCS1-203ENST00000507004 CTTNQ14247 550 aaKnown RBP16.07■□□□□ 0.16
HMGCS1-203ENST00000507004 CLUL1Q15846 466 aa16.07■□□□□ 0.16
HMGCS1-203ENST00000507004 PLPP4Q5VZY2 271 aa16.07■□□□□ 0.16
HMGCS1-203ENST00000507004 MRPL10Q7Z7H8 261 aaKnown RBP16.07■□□□□ 0.16
HMGCS1-203ENST00000507004 MRPL43Q8N983 215 aaKnown RBP16.07■□□□□ 0.16
HMGCS1-203ENST00000507004 TMEM87AQ8NBN3 555 aa16.07■□□□□ 0.16
HMGCS1-203ENST00000507004 RNF149Q8NC42 400 aa16.07■□□□□ 0.16
HMGCS1-203ENST00000507004 ERMNQ8TAM6 284 aa16.07■□□□□ 0.16
HMGCS1-203ENST00000507004 TMEM143Q96AN5 459 aa16.07■□□□□ 0.16
HMGCS1-203ENST00000507004 C8orf76Q96K31 380 aa16.07■□□□□ 0.16
HMGCS1-203ENST00000507004 PHF7Q9BWX1 381 aaPredicted RBP16.07■□□□□ 0.16
HMGCS1-203ENST00000507004 NFKBIZQ9BYH8 718 aa16.07■□□□□ 0.16
HMGCS1-203ENST00000507004 FOXP1Q9H334 677 aaPredicted RBP16.07■□□□□ 0.16
HMGCS1-203ENST00000507004 WRAP73Q9P2S5 460 aaPredicted RBP16.07■□□□□ 0.16
HMGCS1-203ENST00000507004 PCDHB2Q9Y5E7 798 aa16.07■□□□□ 0.16
HMGCS1-203ENST00000507004 XIRP2A4UGR9 3374 aa16.07■□□□□ 0.16
HMGCS1-203ENST00000507004 CSDE1O75534 798 aaKnown RBP16.06■□□□□ 0.16
HMGCS1-203ENST00000507004 GLP2RO95838 553 aa16.06■□□□□ 0.16
HMGCS1-203ENST00000507004 SRGAP2CP0DJJ0 459 aa16.06■□□□□ 0.16
HMGCS1-203ENST00000507004 MUTP22033 750 aa16.06■□□□□ 0.16
HMGCS1-203ENST00000507004 TXKP42681 527 aa16.06■□□□□ 0.16
HMGCS1-203ENST00000507004 TRAPPC10P48553 1259 aa16.06■□□□□ 0.16
HMGCS1-203ENST00000507004 PTENP60484 403 aa16.06■□□□□ 0.16
HMGCS1-203ENST00000507004 TPRNQ4KMQ1 711 aa16.06■□□□□ 0.16
HMGCS1-203ENST00000507004 HERC4Q5GLZ8 1057 aaPredicted RBP16.06■□□□□ 0.16
HMGCS1-203ENST00000507004 KSR1Q8IVT5 923 aa16.06■□□□□ 0.16
HMGCS1-203ENST00000507004 MTMR9Q96QG7 549 aa16.06■□□□□ 0.16
HMGCS1-203ENST00000507004 TMEM175Q9BSA9 504 aa16.06■□□□□ 0.16
HMGCS1-203ENST00000507004 TUFT1Q9NNX1 390 aa16.06■□□□□ 0.16
HMGCS1-203ENST00000507004 HCSTQ9UBK5 93 aa16.06■□□□□ 0.16
HMGCS1-203ENST00000507004 BARX2Q9UMQ3 279 aaPredicted RBP16.06■□□□□ 0.16
HMGCS1-203ENST00000507004 KIF3AQ9Y496 699 aa16.06■□□□□ 0.16
HMGCS1-203ENST00000507004 IRAK3Q9Y616 596 aa16.06■□□□□ 0.16
HMGCS1-203ENST00000507004 STK24Q9Y6E0 443 aa16.06■□□□□ 0.16
HMGCS1-203ENST00000507004 REV3LO60673 3130 aa16.05■□□□□ 0.16
HMGCS1-203ENST00000507004 PER2O15055 1255 aa16.05■□□□□ 0.16
HMGCS1-203ENST00000507004 JAK2O60674 1132 aa16.05■□□□□ 0.16
HMGCS1-203ENST00000507004 OFD1O75665 1012 aa16.05■□□□□ 0.16
HMGCS1-203ENST00000507004 NCLP19338 710 aaKnown RBP16.05■□□□□ 0.16
HMGCS1-203ENST00000507004 RBM25P49756 843 aaKnown RBP16.05■□□□□ 0.16
HMGCS1-203ENST00000507004 KCNC3Q14003 757 aa16.05■□□□□ 0.16
HMGCS1-203ENST00000507004 ANKRD54Q6NXT1 300 aa16.05■□□□□ 0.16
HMGCS1-203ENST00000507004 NOTUMQ6P988 496 aa16.05■□□□□ 0.16
HMGCS1-203ENST00000507004 DDX53Q86TM3 631 aaKnown RBP16.05■□□□□ 0.16
HMGCS1-203ENST00000507004 PPFIBP1Q86W92 1011 aa16.05■□□□□ 0.16
HMGCS1-203ENST00000507004 FAM184AQ8NB25 1140 aa16.05■□□□□ 0.16
HMGCS1-203ENST00000507004 MCPH1Q8NEM0 835 aa16.05■□□□□ 0.16
HMGCS1-203ENST00000507004 KHSRPQ92945 711 aaKnown RBP eCLIP16.05■□□□□ 0.161e-21■■■□□ 17.7
HMGCS1-203ENST00000507004 NECTIN4Q96NY8 510 aa16.05■□□□□ 0.16
HMGCS1-203ENST00000507004 FAM193BQ96PV7 902 aaPredicted RBP16.05■□□□□ 0.16
HMGCS1-203ENST00000507004 KCNH6Q9H252 994 aa16.05■□□□□ 0.16
HMGCS1-203ENST00000507004 RSAD1Q9HA92 442 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms