RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 AGO3Q9H9G7 860 aaKnown RBP13.18□□□□□ -0.3
PDLIM5-208ENST00000504489 C17orf75Q9HAS0 396 aa13.18□□□□□ -0.3
PDLIM5-208ENST00000504489 MAGEF1Q9HAY2 307 aa13.18□□□□□ -0.3
PDLIM5-208ENST00000504489 IFT122Q9HBG6 1241 aa13.18□□□□□ -0.3
PDLIM5-208ENST00000504489 ERVK-5Q9HDB9 667 aa13.18□□□□□ -0.3
PDLIM5-208ENST00000504489 KBTBD4Q9NVX7 518 aa13.18□□□□□ -0.3
PDLIM5-208ENST00000504489 ODF2LQ9ULJ1 636 aa13.18□□□□□ -0.3
PDLIM5-208ENST00000504489 PADI3Q9ULW8 664 aa13.18□□□□□ -0.3
PDLIM5-208ENST00000504489 NOC2LQ9Y3T9 749 aaKnown RBP13.18□□□□□ -0.3
PDLIM5-208ENST00000504489 TRIOBPQ9H2D6 2365 aa13.17□□□□□ -0.3
PDLIM5-208ENST00000504489 NLRC5Q86WI3 1866 aa13.17□□□□□ -0.3
PDLIM5-208ENST00000504489 ABHD14A-ACY1A0A1B0GW23 586 aa13.17□□□□□ -0.3
PDLIM5-208ENST00000504489 GPR182O15218 404 aa13.17□□□□□ -0.3
PDLIM5-208ENST00000504489 RPS6KA5O75582 802 aa13.17□□□□□ -0.3
PDLIM5-208ENST00000504489 CD52P31358 61 aa13.17□□□□□ -0.3
PDLIM5-208ENST00000504489 SYKP43405 635 aa13.17□□□□□ -0.3
PDLIM5-208ENST00000504489 NAMPTP43490 491 aa13.17□□□□□ -0.3
PDLIM5-208ENST00000504489 PHKA2P46019 1235 aa13.17□□□□□ -0.3
PDLIM5-208ENST00000504489 NDUFA8P51970 172 aa13.17□□□□□ -0.3
PDLIM5-208ENST00000504489 GIT2Q14161 759 aa13.17□□□□□ -0.3
PDLIM5-208ENST00000504489 FAM228AQ86W67 206 aa13.17□□□□□ -0.3
PDLIM5-208ENST00000504489 FBXO22Q8NEZ5 403 aa13.17□□□□□ -0.3
PDLIM5-208ENST00000504489 BSNDQ8WZ55 320 aa13.17□□□□□ -0.3
PDLIM5-208ENST00000504489 HERVK_113Q902F9 699 aa13.17□□□□□ -0.3
PDLIM5-208ENST00000504489 IFT74Q96LB3 600 aa13.17□□□□□ -0.3
PDLIM5-208ENST00000504489 REEP2Q9BRK0 252 aa13.17□□□□□ -0.3
PDLIM5-208ENST00000504489 LRRC27Q9C0I9 530 aa13.17□□□□□ -0.3
PDLIM5-208ENST00000504489 POLD4Q9HCU8 107 aa13.17□□□□□ -0.3
PDLIM5-208ENST00000504489 KCNG1Q9UIX4 513 aa13.17□□□□□ -0.3
PDLIM5-208ENST00000504489 NPHP3-ACAD11A0A0J9YXS1 232 aa13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 MYMKA6NI61 221 aa13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 LRRIQ4A6NIV6 560 aa13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 ACTN4O43707 911 aaKnown RBP13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 EFCAB14O75071 495 aa13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 BAIAP3O94812 1187 aa13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 KRT18P05783 430 aaKnown RBP13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 SLFN14P0C7P3 912 aa13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 ZNF131P52739 623 aa13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 AMPD3Q01432 767 aa13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 RAD51AP2Q09MP3 1159 aa13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 PAK2Q13177 524 aa13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 IKBKEQ14164 716 aa13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 PCBP1Q15365 356 aaKnown RBP eCLIP13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 SHHQ15465 462 aa13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 TCTN1Q2MV58 587 aa13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 CDCA2Q69YH5 1023 aaPredicted RBP13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 CNNM4Q6P4Q7 775 aa13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 DDX12PQ92771 950 aa13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 DNAJC19Q96DA6 116 aa13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 NTPCRQ9BSD7 190 aaKnown RBP13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 FTHL17Q9BXU8 183 aa13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 MFRPQ9BY79 579 aa13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 GOLPH3LQ9H4A5 285 aa13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 ST3GAL5Q9UNP4 418 aa13.16□□□□□ -0.3
PDLIM5-208ENST00000504489 PDCD11Q14690 1871 aaKnown RBP13.15□□□□□ -0.3
PDLIM5-208ENST00000504489 SFI1A8K8P3 1242 aa13.15□□□□□ -0.3
PDLIM5-208ENST00000504489 CSDE1O75534 798 aaKnown RBP13.15□□□□□ -0.3
PDLIM5-208ENST00000504489 PLS3P13797 630 aa13.15□□□□□ -0.3
PDLIM5-208ENST00000504489 SFPQP23246 707 aaKnown RBP eCLIP13.15□□□□□ -0.3
PDLIM5-208ENST00000504489 PEX3P56589 373 aa13.15□□□□□ -0.3
PDLIM5-208ENST00000504489 NFX1Q12986 1120 aaKnown RBP13.15□□□□□ -0.3
PDLIM5-208ENST00000504489 DMP1Q13316 513 aaPredicted RBP13.15□□□□□ -0.3
PDLIM5-208ENST00000504489 LONRF3Q496Y0 759 aa13.15□□□□□ -0.3
PDLIM5-208ENST00000504489 C9orf50Q5SZB4 431 aa13.15□□□□□ -0.3
PDLIM5-208ENST00000504489 RASIP1Q5U651 963 aa13.15□□□□□ -0.3
PDLIM5-208ENST00000504489 OTOP2Q7RTS6 562 aa13.15□□□□□ -0.3
PDLIM5-208ENST00000504489 CEP57L1Q8IYX8 460 aa13.15□□□□□ -0.3
PDLIM5-208ENST00000504489 SPIRE2Q8WWL2 714 aa13.15□□□□□ -0.3
PDLIM5-208ENST00000504489 C2orf40Q9H1Z8 148 aa13.15□□□□□ -0.3
PDLIM5-208ENST00000504489 MTIF3Q9H2K0 278 aaKnown RBP13.15□□□□□ -0.3
PDLIM5-208ENST00000504489 TMX1Q9H3N1 280 aa13.15□□□□□ -0.3
PDLIM5-208ENST00000504489 MINDY3Q9H8M7 445 aa13.15□□□□□ -0.3
PDLIM5-208ENST00000504489 LARSQ9P2J5 1176 aaKnown RBP13.15□□□□□ -0.3
PDLIM5-208ENST00000504489 SERTAD1Q9UHV2 236 aa13.15□□□□□ -0.3
PDLIM5-208ENST00000504489 RANBP2P49792 3224 aaKnown RBP13.14□□□□□ -0.31
PDLIM5-208ENST00000504489 A0A1W2PPC1 479 aa13.14□□□□□ -0.31
PDLIM5-208ENST00000504489 TBCAO75347 108 aaKnown RBP13.14□□□□□ -0.31
PDLIM5-208ENST00000504489 FAM13AO94988 1023 aa13.14□□□□□ -0.31
PDLIM5-208ENST00000504489 ZNF202O95125 648 aa13.14□□□□□ -0.31
PDLIM5-208ENST00000504489 NPTX2P47972 431 aa13.14□□□□□ -0.31
PDLIM5-208ENST00000504489 EFNA5P52803 228 aa13.14□□□□□ -0.31
PDLIM5-208ENST00000504489 MBTD1Q05BQ5 628 aa13.14□□□□□ -0.31
PDLIM5-208ENST00000504489 TPRNQ4KMQ1 711 aa13.14□□□□□ -0.31
PDLIM5-208ENST00000504489 DYMQ7RTS9 669 aa13.14□□□□□ -0.31
PDLIM5-208ENST00000504489 ZBTB8OSQ8IWT0 167 aa13.14□□□□□ -0.31
PDLIM5-208ENST00000504489 TDHQ8IZJ6 230 aa13.14□□□□□ -0.31
PDLIM5-208ENST00000504489 FMR1NBQ8N0W7 255 aaPredicted RBP13.14□□□□□ -0.31
PDLIM5-208ENST00000504489 ENGASEQ8NFI3 743 aa13.14□□□□□ -0.31
PDLIM5-208ENST00000504489 DEPTORQ8TB45 409 aa13.14□□□□□ -0.31
PDLIM5-208ENST00000504489 STAMQ92783 540 aa13.14□□□□□ -0.31
PDLIM5-208ENST00000504489 KCNN1Q92952 543 aa13.14□□□□□ -0.31
PDLIM5-208ENST00000504489 GBP4Q96PP9 640 aa13.14□□□□□ -0.31
PDLIM5-208ENST00000504489 C7orf25Q9BPX7 421 aa13.14□□□□□ -0.31
PDLIM5-208ENST00000504489 TRIM9Q9C026 710 aa13.14□□□□□ -0.31
PDLIM5-208ENST00000504489 PARVGQ9HBI0 331 aa13.14□□□□□ -0.31
PDLIM5-208ENST00000504489 CHST12Q9NRB3 414 aa13.14□□□□□ -0.31
PDLIM5-208ENST00000504489 SEL1LQ9UBV2 794 aa13.14□□□□□ -0.31
PDLIM5-208ENST00000504489 ANK1P16157 1881 aa13.14□□□□□ -0.31
PDLIM5-208ENST00000504489 ADGRA3Q8IWK6 1321 aa13.13□□□□□ -0.31
PDLIM5-208ENST00000504489 KIAA1671Q9BY89 1806 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms