RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 STAT5BP51692 787 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 ANGEL2Q5VTE6 544 aaKnown RBP14.03□□□□□ -0.16
PTPRF-215ENST00000496447 CNPY4Q8N129 248 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 EXT2Q93063 718 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 KIF12Q96FN5 646 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 PPP1R9AQ9ULJ8 1098 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 A8MXQ7 604 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 DNAJC8O75937 253 aaPredicted RBP14.03□□□□□ -0.16
PTPRF-215ENST00000496447 CASP8Q14790 479 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 VEPH1Q14D04 833 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 TTC39CQ8N584 583 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 C11orf70Q9BRQ4 267 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 TEX13BQ9BXU2 312 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 USP31Q70CQ4 1352 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 CHEK2O96017 543 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 CASP1P29466 404 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 SLCO1A2P46721 670 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 SCARF1Q14162 830 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 KYAT1Q16773 422 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 TTC19Q6DKK2 380 aaPredicted RBP14.03□□□□□ -0.16
PTPRF-215ENST00000496447 TRIM67Q6ZTA4 783 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 LINC00116Q8NCU8 138 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 ZNF280CQ8ND82 737 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 PDZD8Q8NEN9 1154 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 FGD4Q96M96 766 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 ZNF560Q96MR9 790 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 IQGAP3Q86VI3 1631 aa14.02□□□□□ -0.16
PTPRF-215ENST00000496447 KCNH2Q12809 1159 aa14.02□□□□□ -0.16
PTPRF-215ENST00000496447 LPAR1Q92633 364 aa14.02□□□□□ -0.16
PTPRF-215ENST00000496447 ACAP3Q96P50 834 aa14.02□□□□□ -0.16
PTPRF-215ENST00000496447 GGA3Q9NZ52 723 aa14.02□□□□□ -0.16
PTPRF-215ENST00000496447 ZNF70Q9UC06 446 aaPredicted RBP14.02□□□□□ -0.16
PTPRF-215ENST00000496447 GSTA4O15217 222 aa14.02□□□□□ -0.16
PTPRF-215ENST00000496447 MFAP3LO75121 409 aa14.02□□□□□ -0.16
PTPRF-215ENST00000496447 POLE2P56282 527 aa14.02□□□□□ -0.16
PTPRF-215ENST00000496447 EPHA7Q15375 998 aa14.02□□□□□ -0.16
PTPRF-215ENST00000496447 RSBN1LQ6PCB5 846 aaPredicted RBP14.02□□□□□ -0.16
PTPRF-215ENST00000496447 GPD1LQ8N335 351 aa14.02□□□□□ -0.16
PTPRF-215ENST00000496447 PLA2G12BQ9BX93 195 aa14.02□□□□□ -0.16
PTPRF-215ENST00000496447 MAP3K20Q9NYL2 800 aaKnown RBP14.02□□□□□ -0.16
PTPRF-215ENST00000496447 RBAKQ9NYW8 714 aaPredicted RBP14.02□□□□□ -0.16
PTPRF-215ENST00000496447 SETD1BQ9UPS6 1966 aaKnown RBP14.02□□□□□ -0.16
PTPRF-215ENST00000496447 ATP1A3P13637 1013 aa14.02□□□□□ -0.17
PTPRF-215ENST00000496447 KCNJ6P48051 423 aa14.02□□□□□ -0.17
PTPRF-215ENST00000496447 PAPOLAP51003 745 aaKnown RBP14.02□□□□□ -0.17
PTPRF-215ENST00000496447 STAG2Q8N3U4 1231 aa14.02□□□□□ -0.17
PTPRF-215ENST00000496447 MTIF3Q9H2K0 278 aaKnown RBP14.02□□□□□ -0.17
PTPRF-215ENST00000496447 PIN4Q9Y237 131 aaKnown RBP14.02□□□□□ -0.17
PTPRF-215ENST00000496447 FARP1Q9Y4F1 1045 aaPredicted RBP14.02□□□□□ -0.17
PTPRF-215ENST00000496447 FGGP02679 453 aa14.02□□□□□ -0.17
PTPRF-215ENST00000496447 PLS3P13797 630 aa14.02□□□□□ -0.17
PTPRF-215ENST00000496447 TTC30BQ8N4P2 665 aa14.02□□□□□ -0.17
PTPRF-215ENST00000496447 HEY1Q9Y5J3 304 aa14.02□□□□□ -0.17
PTPRF-215ENST00000496447 GNGT2O14610 69 aa14.02□□□□□ -0.17
PTPRF-215ENST00000496447 ZBTB22O15209 634 aa14.02□□□□□ -0.17
PTPRF-215ENST00000496447 GNA15P30679 374 aa14.02□□□□□ -0.17
PTPRF-215ENST00000496447 GPC5P78333 572 aa14.02□□□□□ -0.17
PTPRF-215ENST00000496447 CEP55Q53EZ4 464 aa14.02□□□□□ -0.17
PTPRF-215ENST00000496447 RNF149Q8NC42 400 aa14.02□□□□□ -0.17
PTPRF-215ENST00000496447 FLT1P17948 1338 aa14.01□□□□□ -0.17
PTPRF-215ENST00000496447 IQANK1A0A1B0GTG1 560 aa14.01□□□□□ -0.17
PTPRF-215ENST00000496447 EFNA5P52803 228 aa14.01□□□□□ -0.17
PTPRF-215ENST00000496447 SF3B3Q15393 1217 aaKnown RBP14.01□□□□□ -0.17
PTPRF-215ENST00000496447 TAF1BQ53T94 588 aaPredicted RBP14.01□□□□□ -0.17
PTPRF-215ENST00000496447 KRT39Q6A163 491 aa14.01□□□□□ -0.17
PTPRF-215ENST00000496447 AGO2Q9UKV8 859 aaKnown RBP14.01□□□□□ -0.17
PTPRF-215ENST00000496447 ENTPD3O75355 529 aa14.01□□□□□ -0.17
PTPRF-215ENST00000496447 CAMTA2O94983 1202 aa14.01□□□□□ -0.17
PTPRF-215ENST00000496447 MOCS2O96007 188 aaPredicted RBP14.01□□□□□ -0.17
PTPRF-215ENST00000496447 SESN3P58005 492 aa14.01□□□□□ -0.17
PTPRF-215ENST00000496447 YWHAHQ04917 246 aaPredicted RBP14.01□□□□□ -0.17
PTPRF-215ENST00000496447 TKFCQ3LXA3 575 aa14.01□□□□□ -0.17
PTPRF-215ENST00000496447 FRA10AC1Q70Z53 315 aa14.01□□□□□ -0.17
PTPRF-215ENST00000496447 TTC13Q8NBP0 860 aa14.01□□□□□ -0.17
PTPRF-215ENST00000496447 INTS2Q9H0H0 1204 aaKnown RBP14.01□□□□□ -0.17
PTPRF-215ENST00000496447 ZRANB2O95218 330 aaKnown RBP eCLIP14.01□□□□□ -0.17
PTPRF-215ENST00000496447 PRCPP42785 496 aa14.01□□□□□ -0.17
PTPRF-215ENST00000496447 PSMC1P62191 440 aaKnown RBP14.01□□□□□ -0.17
PTPRF-215ENST00000496447 ACCSLQ4AC99 568 aa14.01□□□□□ -0.17
PTPRF-215ENST00000496447 SPDL1Q96EA4 605 aa14.01□□□□□ -0.17
PTPRF-215ENST00000496447 LGALS16A8MUM7 142 aa14.01□□□□□ -0.17
PTPRF-215ENST00000496447 APOEP02649 317 aa14.01□□□□□ -0.17
PTPRF-215ENST00000496447 C6orf222P0C671 652 aaPredicted RBP14.01□□□□□ -0.17
PTPRF-215ENST00000496447 YWHABP31946 246 aaKnown RBP14.01□□□□□ -0.17
PTPRF-215ENST00000496447 ALS2CLQ60I27 953 aa14.01□□□□□ -0.17
PTPRF-215ENST00000496447 CC2D1AQ6P1N0 951 aaPredicted RBP14.01□□□□□ -0.17
PTPRF-215ENST00000496447 SRRM1Q8IYB3 904 aaKnown RBP14.01□□□□□ -0.17
PTPRF-215ENST00000496447 RNF217Q8TC41 542 aa14.01□□□□□ -0.17
PTPRF-215ENST00000496447 DIS3Q9Y2L1 958 aaKnown RBP14.01□□□□□ -0.17
PTPRF-215ENST00000496447 PSMD14O00487 310 aa14□□□□□ -0.17
PTPRF-215ENST00000496447 DYNC1LI2O43237 492 aaPredicted RBP14□□□□□ -0.17
PTPRF-215ENST00000496447 YAF2Q8IY57 180 aa14□□□□□ -0.17
PTPRF-215ENST00000496447 FMO2Q99518 471 aa14□□□□□ -0.17
PTPRF-215ENST00000496447 KATNAL1Q9BW62 490 aa14□□□□□ -0.17
PTPRF-215ENST00000496447 RASGRF2O14827 1237 aa14□□□□□ -0.17
PTPRF-215ENST00000496447 SKIP12755 728 aa14□□□□□ -0.17
PTPRF-215ENST00000496447 TAC1P20366 129 aa14□□□□□ -0.17
PTPRF-215ENST00000496447 AP3M2P53677 418 aa14□□□□□ -0.17
PTPRF-215ENST00000496447 NME3Q13232 169 aa14□□□□□ -0.17
PTPRF-215ENST00000496447 HEMGNQ9BXL5 484 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms