RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	ASL	P04424	464 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	ADH5	P11766	374 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	SLC5A1	P13866	664 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	HOXB4	P17483	251 aa	Predicted RBP	5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	ADORA1	P30542	326 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	ZNF445	P59923	1031 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	HNRNPU	Q00839	825 aa	Known RBP eCLIP	5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	AUH	Q13825	339 aa	Known RBP	5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	TRIM60	Q495X7	471 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	CAVIN4	Q5BKX8	364 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	SLC35F1	Q5T1Q4	408 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	GORAB	Q5T7V8	394 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	LCE2A	Q5TA79	106 aa	Predicted RBP	5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	GTF2IRD2B	Q6EKJ0	949 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	GADL1	Q6ZQY3	521 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	KIAA1211	Q6ZU35	1233 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	GTF2IRD2	Q86UP8	949 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	CCAR1	Q8IX12	1150 aa	Known RBP	5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	SCYL3	Q8IZE3	742 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	AHI1	Q8N157	1196 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	FAM151A	Q8WW52	585 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	LPIN2	Q92539	896 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	USP6NL	Q92738	828 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	COA7	Q96BR5	231 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	IDI2	Q9BXS1	227 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	GBP3	Q9H0R5	595 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	TXNRD2	Q9NNW7	524 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	DDX4	Q9NQI0	724 aa	Known RBP	5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	PRDM5	Q9NQX1	630 aa	Predicted RBP	5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	PICK1	Q9NRD5	415 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	RAD18	Q9NS91	495 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	FLRT1	Q9NZU1	646 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	AKT3	Q9Y243	479 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	AFG3L2	Q9Y4W6	797 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	ZHX2	Q9Y6X8	837 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	MROH7-TTC4	A0A0A0MT08	1334 aa		5.17	□□□□□ -1.58
VPS52-222	ENST00000495981	PRRC2B	Q5JSZ5	2229 aa	Known RBP	5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	BRWD1	Q9NSI6	2320 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	VPS13A	Q96RL7	3174 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	SHISA8	B8ZZ34	492 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	CXCL11	O14625	94 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	OPA1	O60313	960 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	BRINP1	O60477	761 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	EFCAB14	O75071	495 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	PPM1B	O75688	479 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	TIAF1	O95411	115 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	SCG5	P05408	212 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	IFIT1	P09914	478 aa	Known RBP	5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	JMJD7	P0C870	316 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	IGFALS	P35858	605 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	NEK4	P51957	841 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	KRT76	Q01546	638 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	ITK	Q08881	620 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	TCP10	Q12799	353 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	MAP4K2	Q12851	820 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	PIN1	Q13526	163 aa	Predicted RBP	5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	ATP2B3	Q16720	1220 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	PRSS53	Q2L4Q9	553 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	GJC2	Q5T442	439 aa	Predicted RBP	5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	SLC39A5	Q6ZMH5	540 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	ARMCX6	Q7L4S7	300 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	ADAT2	Q7Z6V5	191 aa	Known RBP	5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	SPATS2	Q86XZ4	545 aa	Known RBP	5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	SMC5	Q8IY18	1101 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	TMEM145	Q8NBT3	493 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	TTC8	Q8TAM2	541 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	PTPRN2	Q92932	1015 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	HOOK2	Q96ED9	719 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	MTMR8	Q96EF0	704 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	BTBD6	Q96KE9	485 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	KREMEN1	Q96MU8	473 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	MEIS3	Q99687	375 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	SMAD5	Q99717	465 aa	Known RBP	5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	ORAI3	Q9BRQ5	295 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	YIPF4	Q9BSR8	244 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	FOXQ1	Q9C009	403 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	MKRN2	Q9H000	416 aa	Known RBP	5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	NKX2-4	Q9H2Z4	354 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	ATXN3L	Q9H3M9	355 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	SUGCT	Q9HAC7	445 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	ARNT2	Q9HBZ2	717 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	TRHDE	Q9UKU6	1024 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	YBX2	Q9Y2T7	364 aa	Known RBP	5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	SLC45A1	Q9Y2W3	748 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	TRAF6	Q9Y4K3	522 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	RLF	Q13129	1914 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	GVINP1	Q7Z2Y8	2422 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	TNKS	O95271	1327 aa		5.16	□□□□□ -1.58
VPS52-222	ENST00000495981	LRRC37A2	A6NM11	1700 aa		5.15	□□□□□ -1.58
VPS52-222	ENST00000495981	ACACB	O00763	2458 aa		5.15	□□□□□ -1.58
VPS52-222	ENST00000495981	FASN	P49327	2511 aa	Known RBP	5.15	□□□□□ -1.58
VPS52-222	ENST00000495981	DDTL	A6NHG4	134 aa	Predicted RBP	5.15	□□□□□ -1.59
VPS52-222	ENST00000495981	EPOP	A6NHQ4	379 aa		5.15	□□□□□ -1.59
VPS52-222	ENST00000495981	PRR33	A8MZF0	331 aa		5.15	□□□□□ -1.59
VPS52-222	ENST00000495981	NOP56	O00567	594 aa	Known RBP	5.15	□□□□□ -1.59
VPS52-222	ENST00000495981	ANP32C	O43423	234 aa		5.15	□□□□□ -1.59
VPS52-222	ENST00000495981	ENTPD3	O75355	529 aa		5.15	□□□□□ -1.59
VPS52-222	ENST00000495981	ABLIM3	O94929	683 aa		5.15	□□□□□ -1.59

Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms