RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 CLASP2O75122 1294 aaKnown RBP24.73■■□□□ 1.55
HDDC3-203ENST00000494993 P4HBP07237 508 aaKnown RBP24.73■■□□□ 1.55
HDDC3-203ENST00000494993 XBP1P17861 261 aa24.73■■□□□ 1.55
HDDC3-203ENST00000494993 CA8P35219 290 aa24.73■■□□□ 1.55
HDDC3-203ENST00000494993 SIGLEC14Q08ET2 396 aa24.73■■□□□ 1.55
HDDC3-203ENST00000494993 BMS1Q14692 1282 aaKnown RBP24.73■■□□□ 1.55
HDDC3-203ENST00000494993 TPRNQ4KMQ1 711 aa24.73■■□□□ 1.55
HDDC3-203ENST00000494993 GLB1LQ6UWU2 654 aa24.73■■□□□ 1.55
HDDC3-203ENST00000494993 TMEM173Q86WV6 379 aaPredicted RBP24.73■■□□□ 1.55
HDDC3-203ENST00000494993 SLC7A3Q8WY07 619 aa24.73■■□□□ 1.55
HDDC3-203ENST00000494993 IFT122Q9HBG6 1241 aa24.73■■□□□ 1.55
HDDC3-203ENST00000494993 TBC1D13Q9NVG8 400 aa24.73■■□□□ 1.55
HDDC3-203ENST00000494993 COL4A3BPQ9Y5P4 624 aa24.73■■□□□ 1.55
HDDC3-203ENST00000494993 MEIS3P2A8K0S8 358 aa24.72■■□□□ 1.55
HDDC3-203ENST00000494993 ZNF623O75123 536 aa24.72■■□□□ 1.55
HDDC3-203ENST00000494993 CXCL14O95715 111 aa24.72■■□□□ 1.55
HDDC3-203ENST00000494993 NOMO2Q5JPE7 1267 aa24.72■■□□□ 1.55
HDDC3-203ENST00000494993 VPS52Q8N1B4 723 aa24.72■■□□□ 1.55
HDDC3-203ENST00000494993 ZNF579Q8NAF0 562 aaKnown RBP24.72■■□□□ 1.55
HDDC3-203ENST00000494993 CEP170P1Q96L14 293 aa24.72■■□□□ 1.55
HDDC3-203ENST00000494993 ZBP1Q9H171 429 aa24.72■■□□□ 1.55
HDDC3-203ENST00000494993 DHX33Q9H6R0 707 aaKnown RBP24.72■■□□□ 1.55
HDDC3-203ENST00000494993 NRDE2Q9H7Z3 1164 aa24.72■■□□□ 1.55
HDDC3-203ENST00000494993 AGPAT5Q9NUQ2 364 aa24.72■■□□□ 1.55
HDDC3-203ENST00000494993 WRAP73Q9P2S5 460 aaPredicted RBP24.72■■□□□ 1.55
HDDC3-203ENST00000494993 INPP5FQ9Y2H2 1132 aa24.72■■□□□ 1.55
HDDC3-203ENST00000494993 PPME1Q9Y570 386 aa24.72■■□□□ 1.55
HDDC3-203ENST00000494993 DENND4AQ7Z401 1863 aa24.71■■□□□ 1.55
HDDC3-203ENST00000494993 TBX3O15119 743 aa24.71■■□□□ 1.55
HDDC3-203ENST00000494993 CCNT1O60563 726 aaKnown RBP24.71■■□□□ 1.55
HDDC3-203ENST00000494993 OFD1O75665 1012 aa24.71■■□□□ 1.55
HDDC3-203ENST00000494993 POLGP54098 1239 aaPredicted RBP24.71■■□□□ 1.55
HDDC3-203ENST00000494993 PTPN21Q16825 1174 aa24.71■■□□□ 1.55
HDDC3-203ENST00000494993 PIK3AP1Q6ZUJ8 805 aa24.71■■□□□ 1.55
HDDC3-203ENST00000494993 EXOC8Q8IYI6 725 aa24.71■■□□□ 1.55
HDDC3-203ENST00000494993 OXER1Q8TDS5 423 aa24.71■■□□□ 1.55
HDDC3-203ENST00000494993 HAS1Q92839 578 aa24.71■■□□□ 1.55
HDDC3-203ENST00000494993 IGSF21Q96ID5 467 aa24.71■■□□□ 1.55
HDDC3-203ENST00000494993 NAP1L4Q99733 375 aaKnown RBP24.71■■□□□ 1.55
HDDC3-203ENST00000494993 GJB4Q9NTQ9 266 aa24.71■■□□□ 1.55
HDDC3-203ENST00000494993 CDH22Q9UJ99 828 aa24.71■■□□□ 1.55
HDDC3-203ENST00000494993 TDRD15B5MCY1 1934 aaKnown RBP24.71■■□□□ 1.55
HDDC3-203ENST00000494993 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP24.7■■□□□ 1.54
HDDC3-203ENST00000494993 PFKFB2O60825 505 aa24.7■■□□□ 1.54
HDDC3-203ENST00000494993 SP100P23497 879 aaPredicted RBP24.7■■□□□ 1.54
HDDC3-203ENST00000494993 RFC5P40937 340 aa24.7■■□□□ 1.54
HDDC3-203ENST00000494993 RNASELQ05823 741 aaKnown RBP24.7■■□□□ 1.54
HDDC3-203ENST00000494993 ITIH3Q06033 890 aa24.7■■□□□ 1.54
HDDC3-203ENST00000494993 EPHA7Q15375 998 aa24.7■■□□□ 1.54
HDDC3-203ENST00000494993 CES5AQ6NT32 575 aa24.7■■□□□ 1.54
HDDC3-203ENST00000494993 DDX53Q86TM3 631 aaKnown RBP24.7■■□□□ 1.54
HDDC3-203ENST00000494993 SUGP1Q8IWZ8 645 aaKnown RBP24.7■■□□□ 1.54
HDDC3-203ENST00000494993 C4orf19Q8IY42 314 aa24.7■■□□□ 1.54
HDDC3-203ENST00000494993 PSPC1Q8WXF1 523 aaKnown RBP24.7■■□□□ 1.54
HDDC3-203ENST00000494993 PGBD4Q96DM1 585 aa24.7■■□□□ 1.54
HDDC3-203ENST00000494993 LXNQ9BS40 222 aa24.7■■□□□ 1.54
HDDC3-203ENST00000494993 ADAM7Q9H2U9 754 aa24.7■■□□□ 1.54
HDDC3-203ENST00000494993 TPCN1Q9ULQ1 816 aa24.7■■□□□ 1.54
HDDC3-203ENST00000494993 IRAK3Q9Y616 596 aa24.7■■□□□ 1.54
HDDC3-203ENST00000494993 DTNBO60941 627 aa24.69■■□□□ 1.54
HDDC3-203ENST00000494993 GALTP07902 379 aa24.69■■□□□ 1.54
HDDC3-203ENST00000494993 CTSAP10619 480 aa24.69■■□□□ 1.54
HDDC3-203ENST00000494993 MRE11P49959 708 aa24.69■■□□□ 1.54
HDDC3-203ENST00000494993 SRGAP1Q7Z6B7 1085 aa24.69■■□□□ 1.54
HDDC3-203ENST00000494993 POTEDQ86YR6 584 aa24.69■■□□□ 1.54
HDDC3-203ENST00000494993 FBXL6Q8N531 539 aa24.69■■□□□ 1.54
HDDC3-203ENST00000494993 BCL7CQ8WUZ0 217 aaPredicted RBP24.69■■□□□ 1.54
HDDC3-203ENST00000494993 PRPF31Q8WWY3 499 aaKnown RBP24.69■■□□□ 1.54
HDDC3-203ENST00000494993 AUTS2Q8WXX7 1259 aa24.69■■□□□ 1.54
HDDC3-203ENST00000494993 TMEM143Q96AN5 459 aa24.69■■□□□ 1.54
HDDC3-203ENST00000494993 ASIC4Q96FT7 647 aa24.69■■□□□ 1.54
HDDC3-203ENST00000494993 NECTIN4Q96NY8 510 aa24.69■■□□□ 1.54
HDDC3-203ENST00000494993 POMKQ9H5K3 350 aa24.69■■□□□ 1.54
HDDC3-203ENST00000494993 DNAJB4Q9UDY4 337 aa24.69■■□□□ 1.54
HDDC3-203ENST00000494993 NR2E1Q9Y466 385 aa24.69■■□□□ 1.54
HDDC3-203ENST00000494993 PCDHB2Q9Y5E7 798 aa24.69■■□□□ 1.54
HDDC3-203ENST00000494993 C2orf16Q68DN1 1984 aa24.68■■□□□ 1.54
HDDC3-203ENST00000494993 MARCH6O60337 910 aa24.68■■□□□ 1.54
HDDC3-203ENST00000494993 SRGAP2CP0DJJ0 459 aa24.68■■□□□ 1.54
HDDC3-203ENST00000494993 YWHABP31946 246 aaKnown RBP24.68■■□□□ 1.54
HDDC3-203ENST00000494993 LAMTOR4Q0VGL1 99 aa24.68■■□□□ 1.54
HDDC3-203ENST00000494993 GIT2Q14161 759 aa24.68■■□□□ 1.54
HDDC3-203ENST00000494993 EARS2Q5JPH6 523 aaKnown RBP24.68■■□□□ 1.54
HDDC3-203ENST00000494993 NCAPH2Q6IBW4 605 aa24.68■■□□□ 1.54
HDDC3-203ENST00000494993 AGMOQ6ZNB7 445 aa24.68■■□□□ 1.54
HDDC3-203ENST00000494993 PRSS33Q8NF86 280 aa24.68■■□□□ 1.54
HDDC3-203ENST00000494993 GBP3Q9H0R5 595 aa24.68■■□□□ 1.54
HDDC3-203ENST00000494993 MINDY3Q9H8M7 445 aa24.68■■□□□ 1.54
HDDC3-203ENST00000494993 TSHZ2Q9NRE2 1034 aa24.68■■□□□ 1.54
HDDC3-203ENST00000494993 BMP2KQ9NSY1 1161 aaPredicted RBP24.68■■□□□ 1.54
HDDC3-203ENST00000494993 RGL1Q9NZL6 768 aa24.68■■□□□ 1.54
HDDC3-203ENST00000494993 GAS2O43903 313 aaKnown RBP24.67■■□□□ 1.54
HDDC3-203ENST00000494993 CTDNEP1O95476 244 aa24.67■■□□□ 1.54
HDDC3-203ENST00000494993 MTHFRP42898 656 aa24.67■■□□□ 1.54
HDDC3-203ENST00000494993 SLC11A1P49279 550 aa24.67■■□□□ 1.54
HDDC3-203ENST00000494993 SPIRE1Q08AE8 756 aa24.67■■□□□ 1.54
HDDC3-203ENST00000494993 EMC2Q15006 297 aa24.67■■□□□ 1.54
HDDC3-203ENST00000494993 OTUD6AQ7L8S5 288 aa24.67■■□□□ 1.54
HDDC3-203ENST00000494993 MRPL10Q7Z7H8 261 aaKnown RBP24.67■■□□□ 1.54
HDDC3-203ENST00000494993 ZBTB33Q86T24 672 aa24.67■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms