RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 PPP2R3CQ969Q6 453 aa16.77■□□□□ 0.28
USP39-217ENST00000491659 POLR3FQ9H1D9 316 aaPredicted RBP16.77■□□□□ 0.28
USP39-217ENST00000491659 HCSTQ9UBK5 93 aa16.77■□□□□ 0.28
USP39-217ENST00000491659 A0A087WWV3 80 aa16.76■□□□□ 0.27
USP39-217ENST00000491659 ARHGEF35A5YM69 484 aa16.76■□□□□ 0.27
USP39-217ENST00000491659 ARL2P36404 184 aa16.76■□□□□ 0.27
USP39-217ENST00000491659 PTENP60484 403 aa16.76■□□□□ 0.27
USP39-217ENST00000491659 UBE3AQ05086 875 aa16.76■□□□□ 0.27
USP39-217ENST00000491659 NCBP1Q09161 790 aaKnown RBP16.76■□□□□ 0.27
USP39-217ENST00000491659 CAPSQ13938 189 aa16.76■□□□□ 0.27
USP39-217ENST00000491659 LARP1BQ659C4 914 aaKnown RBP16.76■□□□□ 0.27
USP39-217ENST00000491659 SPPL3Q8TCT6 385 aa16.76■□□□□ 0.27
USP39-217ENST00000491659 ASAP3Q8TDY4 903 aa16.76■□□□□ 0.27
USP39-217ENST00000491659 SNX29Q8TEQ0 813 aa16.76■□□□□ 0.27
USP39-217ENST00000491659 POF1BQ8WVV4 589 aa16.76■□□□□ 0.27
USP39-217ENST00000491659 PGBD4Q96DM1 585 aa16.76■□□□□ 0.27
USP39-217ENST00000491659 CWH43Q9H720 699 aa16.76■□□□□ 0.27
USP39-217ENST00000491659 MINDY3Q9H8M7 445 aa16.76■□□□□ 0.27
USP39-217ENST00000491659 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.76■□□□□ 0.27
USP39-217ENST00000491659 CUL9Q8IWT3 2517 aa16.75■□□□□ 0.27
USP39-217ENST00000491659 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.75■□□□□ 0.27
USP39-217ENST00000491659 INO80B-WBP1J3KQ70 363 aa16.75■□□□□ 0.27
USP39-217ENST00000491659 NCK2O43639 380 aa16.75■□□□□ 0.27
USP39-217ENST00000491659 FGF18O76093 207 aa16.75■□□□□ 0.27
USP39-217ENST00000491659 KCNA5P22460 613 aa16.75■□□□□ 0.27
USP39-217ENST00000491659 GLRA2P23416 452 aa16.75■□□□□ 0.27
USP39-217ENST00000491659 PPM1AP35813 382 aa16.75■□□□□ 0.27
USP39-217ENST00000491659 PRPHP41219 470 aa16.75■□□□□ 0.27
USP39-217ENST00000491659 POU5F1BQ06416 359 aa16.75■□□□□ 0.27
USP39-217ENST00000491659 PDIA5Q14554 519 aa16.75■□□□□ 0.27
USP39-217ENST00000491659 GLB1LQ6UWU2 654 aa16.75■□□□□ 0.27
USP39-217ENST00000491659 DTHD1Q6ZMT9 781 aa16.75■□□□□ 0.27
USP39-217ENST00000491659 EP400NLQ6ZTU2 488 aa16.75■□□□□ 0.27
USP39-217ENST00000491659 MAEAQ7L5Y9 396 aa16.75■□□□□ 0.27
USP39-217ENST00000491659 IFNLR1Q8IU57 520 aaPredicted RBP16.75■□□□□ 0.27
USP39-217ENST00000491659 LPPQ93052 612 aa16.75■□□□□ 0.27
USP39-217ENST00000491659 PABPC5Q96DU9 382 aaKnown RBP16.75■□□□□ 0.27
USP39-217ENST00000491659 ZNF558Q96NG5 402 aa16.75■□□□□ 0.27
USP39-217ENST00000491659 UHRF1Q96T88 793 aaPredicted RBP16.75■□□□□ 0.27
USP39-217ENST00000491659 ZNF623O75123 536 aa16.74■□□□□ 0.27
USP39-217ENST00000491659 BMP1P13497 986 aa16.74■□□□□ 0.27
USP39-217ENST00000491659 DNAJB1P25685 340 aa16.74■□□□□ 0.27
USP39-217ENST00000491659 AXLP30530 894 aa16.74■□□□□ 0.27
USP39-217ENST00000491659 MBTD1Q05BQ5 628 aa16.74■□□□□ 0.27
USP39-217ENST00000491659 CAMK1Q14012 370 aa16.74■□□□□ 0.27
USP39-217ENST00000491659 LEXMQ3ZCV2 418 aa16.74■□□□□ 0.27
USP39-217ENST00000491659 KRT79Q5XKE5 535 aa16.74■□□□□ 0.27
USP39-217ENST00000491659 NOTUMQ6P988 496 aa16.74■□□□□ 0.27
USP39-217ENST00000491659 PADI6Q6TGC4 694 aa16.74■□□□□ 0.27
USP39-217ENST00000491659 KCNT2Q6UVM3 1135 aa16.74■□□□□ 0.27
USP39-217ENST00000491659 LRRC55Q6ZSA7 311 aa16.74■□□□□ 0.27
USP39-217ENST00000491659 IGSF22Q8N9C0 903 aa16.74■□□□□ 0.27
USP39-217ENST00000491659 CCDC51Q96ER9 411 aa16.74■□□□□ 0.27
USP39-217ENST00000491659 NFKBIZQ9BYH8 718 aa16.74■□□□□ 0.27
USP39-217ENST00000491659 TLR9Q9NR96 1032 aa16.74■□□□□ 0.27
USP39-217ENST00000491659 CLDND1Q9NY35 253 aa16.74■□□□□ 0.27
USP39-217ENST00000491659 PCDHB2Q9Y5E7 798 aa16.74■□□□□ 0.27
USP39-217ENST00000491659 BRWD1Q9NSI6 2320 aa16.74■□□□□ 0.27
USP39-217ENST00000491659 A0A0C4DFX4 3053 aa16.73■□□□□ 0.27
USP39-217ENST00000491659 LRRIQ4A6NIV6 560 aa16.73■□□□□ 0.27
USP39-217ENST00000491659 TSPAN1O60635 241 aa16.73■□□□□ 0.27
USP39-217ENST00000491659 HYAL1Q12794 435 aa16.73■□□□□ 0.27
USP39-217ENST00000491659 CUL4AQ13619 759 aa16.73■□□□□ 0.27
USP39-217ENST00000491659 LONRF3Q496Y0 759 aa16.73■□□□□ 0.27
USP39-217ENST00000491659 ZBTB8OSQ8IWT0 167 aa16.73■□□□□ 0.27
USP39-217ENST00000491659 CNNM3Q8NE01 707 aa16.73■□□□□ 0.27
USP39-217ENST00000491659 URGCPQ8TCY9 931 aa16.73■□□□□ 0.27
USP39-217ENST00000491659 MICAL1Q8TDZ2 1067 aa16.73■□□□□ 0.27
USP39-217ENST00000491659 GPRC5CQ9NQ84 441 aa16.73■□□□□ 0.27
USP39-217ENST00000491659 DDX19AQ9NUU7 478 aaKnown RBP16.73■□□□□ 0.27
USP39-217ENST00000491659 KIAA1024Q9UPX6 916 aa16.73■□□□□ 0.27
USP39-217ENST00000491659 LZTS1Q9Y250 596 aa16.73■□□□□ 0.27
USP39-217ENST00000491659 INPP5FQ9Y2H2 1132 aa16.73■□□□□ 0.27
USP39-217ENST00000491659 CNTNAP2Q9UHC6 1331 aa16.72■□□□□ 0.27
USP39-217ENST00000491659 CARNS1A5YM72 827 aa16.72■□□□□ 0.27
USP39-217ENST00000491659 TNFRSF10AO00220 468 aa16.72■□□□□ 0.27
USP39-217ENST00000491659 CYP11B2P19099 503 aa16.72■□□□□ 0.27
USP39-217ENST00000491659 PDCP20941 246 aa16.72■□□□□ 0.27
USP39-217ENST00000491659 HOXA11P31270 313 aaPredicted RBP16.72■□□□□ 0.27
USP39-217ENST00000491659 IRS1P35568 1242 aa16.72■□□□□ 0.27
USP39-217ENST00000491659 ATP2C1P98194 919 aaPredicted RBP16.72■□□□□ 0.27
USP39-217ENST00000491659 PLCB3Q01970 1234 aa16.72■□□□□ 0.27
USP39-217ENST00000491659 COL19A1Q14993 1142 aa16.72■□□□□ 0.27
USP39-217ENST00000491659 NOMO2Q5JPE7 1267 aa16.72■□□□□ 0.27
USP39-217ENST00000491659 MRPS27Q92552 414 aaKnown RBP16.72■□□□□ 0.27
USP39-217ENST00000491659 BHMT2Q9H2M3 363 aa16.72■□□□□ 0.27
USP39-217ENST00000491659 IGFLR1Q9H665 355 aa16.72■□□□□ 0.27
USP39-217ENST00000491659 RSAD1Q9HA92 442 aa16.72■□□□□ 0.27
USP39-217ENST00000491659 SPG21Q9NZD8 308 aa16.72■□□□□ 0.27
USP39-217ENST00000491659 PUF60Q9UHX1 559 aaKnown RBP16.72■□□□□ 0.27
USP39-217ENST00000491659 TDRD15B5MCY1 1934 aaKnown RBP16.72■□□□□ 0.27
USP39-217ENST00000491659 MYO7AQ13402 2215 aa16.72■□□□□ 0.27
USP39-217ENST00000491659 VPS37CA5D8V6 355 aaPredicted RBP16.71■□□□□ 0.27
USP39-217ENST00000491659 MEIS3P2A8K0S8 358 aa16.71■□□□□ 0.27
USP39-217ENST00000491659 ZC3H11AO75152 810 aaKnown RBP eCLIP16.71■□□□□ 0.27
USP39-217ENST00000491659 NCLP19338 710 aaKnown RBP16.71■□□□□ 0.27
USP39-217ENST00000491659 PBX3P40426 434 aa16.71■□□□□ 0.27
USP39-217ENST00000491659 ALDH7A1P49419 539 aaKnown RBP16.71■□□□□ 0.27
USP39-217ENST00000491659 KRT17Q04695 432 aa16.71■□□□□ 0.27
USP39-217ENST00000491659 RNASELQ05823 741 aaKnown RBP16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms