RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 ARHGEF35A5YM69 484 aa20.13■□□□□ 0.81
COL9A3-214ENST00000490398 VWA3AA6NCI4 1184 aa20.13■□□□□ 0.81
COL9A3-214ENST00000490398 B4GALT5O43286 388 aa20.13■□□□□ 0.81
COL9A3-214ENST00000490398 TSPAN1O60635 241 aa20.13■□□□□ 0.81
COL9A3-214ENST00000490398 CYP11B2P19099 503 aa20.13■□□□□ 0.81
COL9A3-214ENST00000490398 PBX3P40426 434 aa20.13■□□□□ 0.81
COL9A3-214ENST00000490398 MXD4Q14582 209 aaPredicted RBP20.13■□□□□ 0.81
COL9A3-214ENST00000490398 IFNLR1Q8IU57 520 aaPredicted RBP20.13■□□□□ 0.81
COL9A3-214ENST00000490398 SPPL3Q8TCT6 385 aa20.13■□□□□ 0.81
COL9A3-214ENST00000490398 SNX21Q969T3 373 aa20.13■□□□□ 0.81
COL9A3-214ENST00000490398 INTS4Q96HW7 963 aaKnown RBP20.13■□□□□ 0.81
COL9A3-214ENST00000490398 CPB2Q96IY4 423 aa20.13■□□□□ 0.81
COL9A3-214ENST00000490398 TRAIPQ9BWF2 469 aa20.13■□□□□ 0.81
COL9A3-214ENST00000490398 BHMT2Q9H2M3 363 aa20.13■□□□□ 0.81
COL9A3-214ENST00000490398 FAM105AQ9NUU6 356 aa20.13■□□□□ 0.81
COL9A3-214ENST00000490398 DACT1Q9NYF0 836 aa20.13■□□□□ 0.81
COL9A3-214ENST00000490398 THEGQ9P2T0 379 aa20.13■□□□□ 0.81
COL9A3-214ENST00000490398 MTMR6Q9Y217 621 aa20.13■□□□□ 0.81
COL9A3-214ENST00000490398 RALGAPA2Q2PPJ7 1873 aa20.13■□□□□ 0.81
COL9A3-214ENST00000490398 FNDC1Q4ZHG4 1894 aaPredicted RBP20.13■□□□□ 0.81
COL9A3-214ENST00000490398 INO80B-WBP1J3KQ70 363 aa20.12■□□□□ 0.81
COL9A3-214ENST00000490398 IRS1P35568 1242 aa20.12■□□□□ 0.81
COL9A3-214ENST00000490398 AFF1P51825 1210 aaKnown RBP20.12■□□□□ 0.81
COL9A3-214ENST00000490398 TCEAL5Q5H9L2 206 aa20.12■□□□□ 0.81
COL9A3-214ENST00000490398 PLIN2Q99541 437 aa20.12■□□□□ 0.81
COL9A3-214ENST00000490398 C11orf84Q9BUA3 381 aaPredicted RBP20.12■□□□□ 0.81
COL9A3-214ENST00000490398 COL25A1Q9BXS0 654 aaPredicted RBP20.12■□□□□ 0.81
COL9A3-214ENST00000490398 USP20Q9Y2K6 914 aa20.12■□□□□ 0.81
COL9A3-214ENST00000490398 RWDD3Q9Y3V2 267 aa20.12■□□□□ 0.81
COL9A3-214ENST00000490398 PCDHGC5Q9Y5F6 944 aa20.12■□□□□ 0.81
COL9A3-214ENST00000490398 TTLL13PA6NNM8 815 aa20.11■□□□□ 0.81
COL9A3-214ENST00000490398 EOMESO95936 686 aa20.11■□□□□ 0.81
COL9A3-214ENST00000490398 MUTP22033 750 aa20.11■□□□□ 0.81
COL9A3-214ENST00000490398 POU5F1BQ06416 359 aa20.11■□□□□ 0.81
COL9A3-214ENST00000490398 SF3A1Q15459 793 aaKnown RBP20.11■□□□□ 0.81
COL9A3-214ENST00000490398 ZRSR1Q15695 479 aaKnown RBP20.11■□□□□ 0.81
COL9A3-214ENST00000490398 SPOUT1Q5T280 376 aaKnown RBP20.11■□□□□ 0.81
COL9A3-214ENST00000490398 KRT79Q5XKE5 535 aa20.11■□□□□ 0.81
COL9A3-214ENST00000490398 BRAPQ7Z569 592 aa20.11■□□□□ 0.81
COL9A3-214ENST00000490398 CDR2LQ86X02 465 aaPredicted RBP20.11■□□□□ 0.81
COL9A3-214ENST00000490398 COLGALT1Q8NBJ5 622 aa20.11■□□□□ 0.81
COL9A3-214ENST00000490398 MCPH1Q8NEM0 835 aa20.11■□□□□ 0.81
COL9A3-214ENST00000490398 LRRC15Q8TF66 581 aa20.11■□□□□ 0.81
COL9A3-214ENST00000490398 P2RX5Q93086 422 aa20.11■□□□□ 0.81
COL9A3-214ENST00000490398 PLVAPQ9BX97 442 aa20.11■□□□□ 0.81
COL9A3-214ENST00000490398 EIF2AQ9BY44 585 aaKnown RBP20.11■□□□□ 0.81
COL9A3-214ENST00000490398 PCDHB2Q9Y5E7 798 aa20.11■□□□□ 0.81
COL9A3-214ENST00000490398 CLIC4Q9Y696 253 aa20.11■□□□□ 0.81
COL9A3-214ENST00000490398 LRRIQ4A6NIV6 560 aa20.1■□□□□ 0.81
COL9A3-214ENST00000490398 EDN1P05305 212 aa20.1■□□□□ 0.81
COL9A3-214ENST00000490398 TFDP1Q14186 410 aa20.1■□□□□ 0.81
COL9A3-214ENST00000490398 PTPROQ16827 1216 aa20.1■□□□□ 0.81
COL9A3-214ENST00000490398 AGMOQ6ZNB7 445 aa20.1■□□□□ 0.81
COL9A3-214ENST00000490398 SMG8Q8ND04 991 aaKnown RBP20.1■□□□□ 0.81
COL9A3-214ENST00000490398 POF1BQ8WVV4 589 aa20.1■□□□□ 0.81
COL9A3-214ENST00000490398 KIFC3Q9BVG8 833 aa20.1■□□□□ 0.81
COL9A3-214ENST00000490398 RUSC1Q9BVN2 902 aa20.1■□□□□ 0.81
COL9A3-214ENST00000490398 RAB34Q9BZG1 259 aa20.1■□□□□ 0.81
COL9A3-214ENST00000490398 RNF39Q9H2S5 420 aa20.1■□□□□ 0.81
COL9A3-214ENST00000490398 MYO7AQ13402 2215 aa20.1■□□□□ 0.81
COL9A3-214ENST00000490398 B4GALT3O60512 393 aa20.09■□□□□ 0.81
COL9A3-214ENST00000490398 ZNF623O75123 536 aa20.09■□□□□ 0.81
COL9A3-214ENST00000490398 OFD1O75665 1012 aa20.09■□□□□ 0.81
COL9A3-214ENST00000490398 EYA4O95677 639 aa20.09■□□□□ 0.81
COL9A3-214ENST00000490398 ARF4P18085 180 aaPredicted RBP20.09■□□□□ 0.81
COL9A3-214ENST00000490398 PDCP20941 246 aa20.09■□□□□ 0.81
COL9A3-214ENST00000490398 KCNQ1P51787 676 aa20.09■□□□□ 0.81
COL9A3-214ENST00000490398 CDCA2Q69YH5 1023 aaPredicted RBP20.09■□□□□ 0.81
COL9A3-214ENST00000490398 MRPL10Q7Z7H8 261 aaKnown RBP20.09■□□□□ 0.81
COL9A3-214ENST00000490398 DAW1Q8N136 415 aa20.09■□□□□ 0.81
COL9A3-214ENST00000490398 ASB2Q96Q27 587 aa20.09■□□□□ 0.81
COL9A3-214ENST00000490398 NFKBIZQ9BYH8 718 aa20.09■□□□□ 0.81
COL9A3-214ENST00000490398 RNF216Q9NWF9 866 aaPredicted RBP20.09■□□□□ 0.81
COL9A3-214ENST00000490398 ATG2AQ2TAZ0 1938 aa20.09■□□□□ 0.81
COL9A3-214ENST00000490398 DLL1O00548 723 aa20.08■□□□□ 0.81
COL9A3-214ENST00000490398 HOXA2O43364 376 aa20.08■□□□□ 0.81
COL9A3-214ENST00000490398 ERLIN2O94905 339 aa20.08■□□□□ 0.81
COL9A3-214ENST00000490398 GTF2F1P35269 517 aaKnown RBP eCLIP20.08■□□□□ 0.81
COL9A3-214ENST00000490398 PTPAQ15257 358 aa20.08■□□□□ 0.81
COL9A3-214ENST00000490398 HYIQ5T013 277 aa20.08■□□□□ 0.81
COL9A3-214ENST00000490398 ARL6IP4Q66PJ3 421 aaKnown RBP20.08■□□□□ 0.81
COL9A3-214ENST00000490398 ABI1Q8IZP0 508 aa20.08■□□□□ 0.81
COL9A3-214ENST00000490398 LRRC43Q8N309 656 aa20.08■□□□□ 0.81
COL9A3-214ENST00000490398 ATXN2LQ8WWM7 1075 aaKnown RBP20.08■□□□□ 0.81
COL9A3-214ENST00000490398 NSUN3Q9H649 340 aaKnown RBP20.08■□□□□ 0.81
COL9A3-214ENST00000490398 DNM3Q9UQ16 869 aa20.08■□□□□ 0.81
COL9A3-214ENST00000490398 INPP5FQ9Y2H2 1132 aa20.08■□□□□ 0.81
COL9A3-214ENST00000490398 HES2Q9Y543 173 aa20.08■□□□□ 0.81
COL9A3-214ENST00000490398 FGF18O76093 207 aa20.07■□□□□ 0.8
COL9A3-214ENST00000490398 ERVFC1P60507 584 aa20.07■□□□□ 0.8
COL9A3-214ENST00000490398 HYAL1Q12794 435 aa20.07■□□□□ 0.8
COL9A3-214ENST00000490398 TMEM119Q4V9L6 283 aa20.07■□□□□ 0.8
COL9A3-214ENST00000490398 NAALADL2Q58DX5 795 aa20.07■□□□□ 0.8
COL9A3-214ENST00000490398 RINT1Q6NUQ1 792 aa20.07■□□□□ 0.8
COL9A3-214ENST00000490398 KCNT2Q6UVM3 1135 aa20.07■□□□□ 0.8
COL9A3-214ENST00000490398 ADGRD2Q7Z7M1 963 aa20.07■□□□□ 0.8
COL9A3-214ENST00000490398 HLA-CQ95604 372 aa20.07■□□□□ 0.8
COL9A3-214ENST00000490398 LMAN2LQ9H0V9 348 aa20.07■□□□□ 0.8
COL9A3-214ENST00000490398 FZD8Q9H461 694 aa20.07■□□□□ 0.8
COL9A3-214ENST00000490398 IPPQ9Y573 584 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms