RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 PSEN2P49810 448 aa12.6□□□□□ -0.39
C9orf3-220ENST00000489318 EFNA5P52803 228 aa12.6□□□□□ -0.39
C9orf3-220ENST00000489318 IRX5P78411 483 aaPredicted RBP12.6□□□□□ -0.39
C9orf3-220ENST00000489318 BEX3Q00994 111 aa12.6□□□□□ -0.39
C9orf3-220ENST00000489318 LAMTOR4Q0VGL1 99 aa12.6□□□□□ -0.39
C9orf3-220ENST00000489318 KIAA0753Q2KHM9 967 aa12.6□□□□□ -0.39
C9orf3-220ENST00000489318 CCSAPQ6IQ19 270 aaPredicted RBP12.6□□□□□ -0.39
C9orf3-220ENST00000489318 FRMD5Q7Z6J6 570 aa12.6□□□□□ -0.39
C9orf3-220ENST00000489318 LRRC71Q8N4P6 559 aa12.6□□□□□ -0.39
C9orf3-220ENST00000489318 KLHDC9Q8NEP7 349 aa12.6□□□□□ -0.39
C9orf3-220ENST00000489318 DEPTORQ8TB45 409 aa12.6□□□□□ -0.39
C9orf3-220ENST00000489318 RAET1EQ8TD07 263 aa12.6□□□□□ -0.39
C9orf3-220ENST00000489318 LMBR1Q8WVP7 490 aa12.6□□□□□ -0.39
C9orf3-220ENST00000489318 PRPF31Q8WWY3 499 aaKnown RBP12.6□□□□□ -0.39
C9orf3-220ENST00000489318 BORCS6Q96GS4 357 aa12.6□□□□□ -0.39
C9orf3-220ENST00000489318 IKZF4Q9H2S9 585 aa12.6□□□□□ -0.39
C9orf3-220ENST00000489318 WBP1LQ9NX94 342 aa12.6□□□□□ -0.39
C9orf3-220ENST00000489318 STYXL1Q9Y6J8 313 aa12.6□□□□□ -0.39
C9orf3-220ENST00000489318 A0A1W2PQC6 194 aa12.59□□□□□ -0.39
C9orf3-220ENST00000489318 LRRIQ4A6NIV6 560 aa12.59□□□□□ -0.39
C9orf3-220ENST00000489318 GOLGA6L6A8MZA4 724 aa12.59□□□□□ -0.39
C9orf3-220ENST00000489318 N4BP3O15049 544 aa12.59□□□□□ -0.39
C9orf3-220ENST00000489318 TEX33O43247 280 aa12.59□□□□□ -0.39
C9orf3-220ENST00000489318 MSCO60682 206 aa12.59□□□□□ -0.39
C9orf3-220ENST00000489318 AKAP3O75969 853 aa12.59□□□□□ -0.39
C9orf3-220ENST00000489318 C6orf222P0C671 652 aaPredicted RBP12.59□□□□□ -0.39
C9orf3-220ENST00000489318 KLRC1P26715 233 aa12.59□□□□□ -0.39
C9orf3-220ENST00000489318 DNM2P50570 870 aa12.59□□□□□ -0.39
C9orf3-220ENST00000489318 CLCN3P51790 818 aa12.59□□□□□ -0.39
C9orf3-220ENST00000489318 PPP2R3AQ06190 1150 aa12.59□□□□□ -0.39
C9orf3-220ENST00000489318 TFDP1Q14186 410 aa12.59□□□□□ -0.39
C9orf3-220ENST00000489318 EFCAB12Q6NXP0 572 aa12.59□□□□□ -0.39
C9orf3-220ENST00000489318 SLC39A4Q6P5W5 647 aa12.59□□□□□ -0.39
C9orf3-220ENST00000489318 SYCP3Q8IZU3 236 aa12.59□□□□□ -0.39
C9orf3-220ENST00000489318 EEF2KMTQ96G04 330 aa12.59□□□□□ -0.39
C9orf3-220ENST00000489318 C2orf40Q9H1Z8 148 aa12.59□□□□□ -0.39
C9orf3-220ENST00000489318 SUGCTQ9HAC7 445 aa12.59□□□□□ -0.39
C9orf3-220ENST00000489318 SPC25Q9HBM1 224 aa12.59□□□□□ -0.39
C9orf3-220ENST00000489318 METTL14Q9HCE5 456 aaKnown RBP12.59□□□□□ -0.39
C9orf3-220ENST00000489318 XPNPEP3Q9NQH7 507 aa12.59□□□□□ -0.39
C9orf3-220ENST00000489318 SUCLA2Q9P2R7 463 aaPredicted RBP12.59□□□□□ -0.39
C9orf3-220ENST00000489318 DDX20Q9UHI6 824 aaKnown RBP12.59□□□□□ -0.39
C9orf3-220ENST00000489318 SMIM35A0A1B0GVV1 85 aa12.58□□□□□ -0.4
C9orf3-220ENST00000489318 KIAA0391O15091 583 aaKnown RBP12.58□□□□□ -0.4
C9orf3-220ENST00000489318 CLIC2O15247 247 aa12.58□□□□□ -0.4
C9orf3-220ENST00000489318 ZEB2O60315 1214 aa12.58□□□□□ -0.4
C9orf3-220ENST00000489318 INHAP05111 366 aa12.58□□□□□ -0.4
C9orf3-220ENST00000489318 MYL3P08590 195 aa12.58□□□□□ -0.4
C9orf3-220ENST00000489318 PRKCSHP14314 528 aaPredicted RBP12.58□□□□□ -0.4
C9orf3-220ENST00000489318 GARTP22102 1010 aa12.58□□□□□ -0.4
C9orf3-220ENST00000489318 TMOD1P28289 359 aa12.58□□□□□ -0.4
C9orf3-220ENST00000489318 CNGA1P29973 690 aa12.58□□□□□ -0.4
C9orf3-220ENST00000489318 ADSSP30520 456 aa12.58□□□□□ -0.4
C9orf3-220ENST00000489318 MTIF2P46199 727 aaKnown RBP12.58□□□□□ -0.4
C9orf3-220ENST00000489318 PTENP60484 403 aa12.58□□□□□ -0.4
C9orf3-220ENST00000489318 C1QTNF8P60827 252 aa12.58□□□□□ -0.4
C9orf3-220ENST00000489318 IGBP1P78318 339 aa12.58□□□□□ -0.4
C9orf3-220ENST00000489318 ENPEPQ07075 957 aa12.58□□□□□ -0.4
C9orf3-220ENST00000489318 TBX2Q13207 712 aaPredicted RBP12.58□□□□□ -0.4
C9orf3-220ENST00000489318 CCDC40Q4G0X9 1142 aa12.58□□□□□ -0.4
C9orf3-220ENST00000489318 VWA3BQ502W6 1294 aa12.58□□□□□ -0.4
C9orf3-220ENST00000489318 SPECC1LQ69YQ0 1117 aa12.58□□□□□ -0.4
C9orf3-220ENST00000489318 ZPBP2Q6X784 338 aa12.58□□□□□ -0.4
C9orf3-220ENST00000489318 SESTD1Q86VW0 696 aa12.58□□□□□ -0.4
C9orf3-220ENST00000489318 ZBTB8OSQ8IWT0 167 aa12.58□□□□□ -0.4
C9orf3-220ENST00000489318 FBXL18Q96ME1 805 aa12.58□□□□□ -0.4
C9orf3-220ENST00000489318 ERGIC2Q96RQ1 377 aa12.58□□□□□ -0.4
C9orf3-220ENST00000489318 MTG1Q9BT17 334 aaPredicted RBP12.58□□□□□ -0.4
C9orf3-220ENST00000489318 BEGAINQ9BUH8 593 aa12.58□□□□□ -0.4
C9orf3-220ENST00000489318 NOC4LQ9BVI4 516 aaKnown RBP12.58□□□□□ -0.4
C9orf3-220ENST00000489318 VPS16Q9H269 839 aa12.58□□□□□ -0.4
C9orf3-220ENST00000489318 TRIP12Q14669 1992 aaPredicted RBP12.58□□□□□ -0.4
C9orf3-220ENST00000489318 TISP43B9A030 160 aa12.57□□□□□ -0.4
C9orf3-220ENST00000489318 ANKRD63C9JTQ0 380 aa12.57□□□□□ -0.4
C9orf3-220ENST00000489318 HNRNPDLO14979 420 aaKnown RBP12.57□□□□□ -0.4
C9orf3-220ENST00000489318 PGK1P00558 417 aa12.57□□□□□ -0.4
C9orf3-220ENST00000489318 EDN1P05305 212 aa12.57□□□□□ -0.4
C9orf3-220ENST00000489318 TPM2P07951 284 aa12.57□□□□□ -0.4
C9orf3-220ENST00000489318 EPB41P11171 864 aaKnown RBP12.57□□□□□ -0.4
C9orf3-220ENST00000489318 GRK4P32298 578 aa12.57□□□□□ -0.4
C9orf3-220ENST00000489318 PSMC2P35998 433 aaKnown RBP12.57□□□□□ -0.4
C9orf3-220ENST00000489318 CASP4P49662 377 aa12.57□□□□□ -0.4
C9orf3-220ENST00000489318 MBTD1Q05BQ5 628 aa12.57□□□□□ -0.4
C9orf3-220ENST00000489318 STRN3Q13033 797 aa12.57□□□□□ -0.4
C9orf3-220ENST00000489318 FAM187BQ17R55 369 aa12.57□□□□□ -0.4
C9orf3-220ENST00000489318 GNASQ5JWF2 1037 aa12.57□□□□□ -0.4
C9orf3-220ENST00000489318 ARMCX5Q6P1M9 558 aa12.57□□□□□ -0.4
C9orf3-220ENST00000489318 NFRKBQ6P4R8 1299 aa12.57□□□□□ -0.4
C9orf3-220ENST00000489318 TMC6Q7Z403 805 aa12.57□□□□□ -0.4
C9orf3-220ENST00000489318 ZNF410Q86VK4 478 aa12.57□□□□□ -0.4
C9orf3-220ENST00000489318 RHPN2Q8IUC4 686 aa12.57□□□□□ -0.4
C9orf3-220ENST00000489318 XXYLT1Q8NBI6 393 aa12.57□□□□□ -0.4
C9orf3-220ENST00000489318 SPC24Q8NBT2 197 aa12.57□□□□□ -0.4
C9orf3-220ENST00000489318 RNF149Q8NC42 400 aa12.57□□□□□ -0.4
C9orf3-220ENST00000489318 SLC35C1Q96A29 364 aa12.57□□□□□ -0.4
C9orf3-220ENST00000489318 ZBTB10Q96DT7 871 aa12.57□□□□□ -0.4
C9orf3-220ENST00000489318 MAP7D2Q96T17 732 aa12.57□□□□□ -0.4
C9orf3-220ENST00000489318 CBWD1Q9BRT8 395 aa12.57□□□□□ -0.4
C9orf3-220ENST00000489318 NDST4Q9H3R1 872 aa12.57□□□□□ -0.4
C9orf3-220ENST00000489318 FZD8Q9H461 694 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms