RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 TBRG4Q969Z0 631 aaKnown RBP eCLIP18.77■□□□□ 0.69e-7■■■■■ 58.1
NPHP4-209ENST00000489180 FAM161BQ96MY7 647 aa18.77■□□□□ 0.6
NPHP4-209ENST00000489180 RMDN3Q96TC7 470 aa18.77■□□□□ 0.6
NPHP4-209ENST00000489180 CHP1Q99653 195 aa18.77■□□□□ 0.6
NPHP4-209ENST00000489180 COA1Q9GZY4 146 aa18.77■□□□□ 0.6
NPHP4-209ENST00000489180 CAPN11Q9UMQ6 739 aa18.77■□□□□ 0.6
NPHP4-209ENST00000489180 TAC1P20366 129 aa18.77■□□□□ 0.6
NPHP4-209ENST00000489180 GPR162Q16538 588 aa18.77■□□□□ 0.6
NPHP4-209ENST00000489180 SPATA4Q8NEY3 305 aa18.77■□□□□ 0.6
NPHP4-209ENST00000489180 RNF217Q8TC41 542 aa18.77■□□□□ 0.6
NPHP4-209ENST00000489180 CHRNA3P32297 505 aa18.77■□□□□ 0.6
NPHP4-209ENST00000489180 CCZ1BP86790 482 aa18.77■□□□□ 0.6
NPHP4-209ENST00000489180 CCZ1P86791 482 aaPredicted RBP18.77■□□□□ 0.6
NPHP4-209ENST00000489180 E4F1Q66K89 784 aaPredicted RBP18.77■□□□□ 0.6
NPHP4-209ENST00000489180 ADGRF4Q8IZF3 695 aa18.77■□□□□ 0.6
NPHP4-209ENST00000489180 ALG13Q9NP73 1137 aaKnown RBP18.77■□□□□ 0.6
NPHP4-209ENST00000489180 ASNSD1Q9NWL6 643 aa18.77■□□□□ 0.6
NPHP4-209ENST00000489180 FBXO2Q9UK22 296 aaPredicted RBP18.77■□□□□ 0.6
NPHP4-209ENST00000489180 NEO1Q92859 1461 aa18.77■□□□□ 0.59
NPHP4-209ENST00000489180 FAM205CA6NFA0 338 aa18.77■□□□□ 0.59
NPHP4-209ENST00000489180 SPDYE1Q8NFV5 336 aaPredicted RBP18.77■□□□□ 0.59
NPHP4-209ENST00000489180 NCLNQ969V3 563 aa18.77■□□□□ 0.59
NPHP4-209ENST00000489180 ADAM33Q9BZ11 813 aa18.77■□□□□ 0.59
NPHP4-209ENST00000489180 LRFN2Q9ULH4 789 aa18.77■□□□□ 0.59
NPHP4-209ENST00000489180 PALLDQ8WX93 1383 aa18.76■□□□□ 0.59
NPHP4-209ENST00000489180 CREB3O43889 395 aa18.76■□□□□ 0.59
NPHP4-209ENST00000489180 ARFIP2P53365 341 aa18.76■□□□□ 0.59
NPHP4-209ENST00000489180 TRIM10Q9UDY6 481 aa18.76■□□□□ 0.59
NPHP4-209ENST00000489180 DIAPH2O60879 1101 aa18.76■□□□□ 0.59
NPHP4-209ENST00000489180 CAV1Q03135 178 aa18.76■□□□□ 0.59
NPHP4-209ENST00000489180 SNF8Q96H20 258 aa18.76■□□□□ 0.59
NPHP4-209ENST00000489180 CYP4F11Q9HBI6 524 aa18.76■□□□□ 0.59
NPHP4-209ENST00000489180 HACD3Q9P035 362 aa18.76■□□□□ 0.59
NPHP4-209ENST00000489180 CHGBP05060 677 aa18.76■□□□□ 0.59
NPHP4-209ENST00000489180 ANXA13P27216 316 aa18.76■□□□□ 0.59
NPHP4-209ENST00000489180 GNA15P30679 374 aa18.76■□□□□ 0.59
NPHP4-209ENST00000489180 ERFP50548 548 aa18.76■□□□□ 0.59
NPHP4-209ENST00000489180 CLEC17AQ6ZS10 378 aa18.76■□□□□ 0.59
NPHP4-209ENST00000489180 BZW1Q7L1Q6 419 aaKnown RBP18.76■□□□□ 0.59
NPHP4-209ENST00000489180 SH2D3CQ8N5H7 860 aa18.76■□□□□ 0.59
NPHP4-209ENST00000489180 CELF1Q92879 486 aaKnown RBP18.76■□□□□ 0.59
NPHP4-209ENST00000489180 TTC25Q96NG3 672 aa18.76■□□□□ 0.59
NPHP4-209ENST00000489180 TTC1Q99614 292 aa18.76■□□□□ 0.59
NPHP4-209ENST00000489180 CPDO75976 1380 aa18.76■□□□□ 0.59
NPHP4-209ENST00000489180 M0QYV0 167 aa18.76■□□□□ 0.59
NPHP4-209ENST00000489180 ATP5HO75947 161 aa18.76■□□□□ 0.59
NPHP4-209ENST00000489180 COPS2P61201 443 aa18.76■□□□□ 0.59
NPHP4-209ENST00000489180 ATP2C1P98194 919 aaPredicted RBP18.76■□□□□ 0.59
NPHP4-209ENST00000489180 CDR2Q01850 454 aa18.76■□□□□ 0.59
NPHP4-209ENST00000489180 SUPT20HL1Q3ZLR7 823 aa18.76■□□□□ 0.59
NPHP4-209ENST00000489180 CCNYL1Q8N7R7 359 aa18.76■□□□□ 0.59
NPHP4-209ENST00000489180 SUCLA2Q9P2R7 463 aaPredicted RBP18.76■□□□□ 0.59
NPHP4-209ENST00000489180 CFAP69A5D8W1 941 aa18.75■□□□□ 0.59
NPHP4-209ENST00000489180 CALB1P05937 261 aa18.75■□□□□ 0.59
NPHP4-209ENST00000489180 DHX38Q92620 1227 aaKnown RBP18.75■□□□□ 0.59
NPHP4-209ENST00000489180 PRMT1Q99873 361 aaKnown RBP18.75■□□□□ 0.59
NPHP4-209ENST00000489180 TRIM15Q9C019 465 aa18.75■□□□□ 0.59
NPHP4-209ENST00000489180 ATP8B3O60423 1300 aa18.75■□□□□ 0.59
NPHP4-209ENST00000489180 NR1H3Q13133 447 aa18.75■□□□□ 0.59
NPHP4-209ENST00000489180 TDRD3Q9H7E2 651 aaKnown RBP18.75■□□□□ 0.59
NPHP4-209ENST00000489180 QTRT2Q9H974 415 aaKnown RBP18.75■□□□□ 0.59
NPHP4-209ENST00000489180 UTYO14607 1347 aa18.75■□□□□ 0.59
NPHP4-209ENST00000489180 NBPF9Q3BBW0 867 aa18.75■□□□□ 0.59
NPHP4-209ENST00000489180 FSCBQ5H9T9 825 aa18.75■□□□□ 0.59
NPHP4-209ENST00000489180 TTC13Q8NBP0 860 aa18.75■□□□□ 0.59
NPHP4-209ENST00000489180 CCDC124Q96CT7 223 aaKnown RBP18.75■□□□□ 0.59
NPHP4-209ENST00000489180 VPS39Q96JC1 886 aa18.75■□□□□ 0.59
NPHP4-209ENST00000489180 CATSPER4Q7RTX7 472 aa18.75■□□□□ 0.59
NPHP4-209ENST00000489180 IZUMO3Q5VZ72 239 aa18.75■□□□□ 0.59
NPHP4-209ENST00000489180 ACAD11Q709F0 780 aa18.75■□□□□ 0.59
NPHP4-209ENST00000489180 NRBF2Q96F24 287 aa18.75■□□□□ 0.59
NPHP4-209ENST00000489180 ZNF335Q9H4Z2 1342 aaPredicted RBP18.74■□□□□ 0.59
NPHP4-209ENST00000489180 TFDP2Q14188 446 aa18.74■□□□□ 0.59
NPHP4-209ENST00000489180 ZNF568Q3ZCX4 644 aa18.74■□□□□ 0.59
NPHP4-209ENST00000489180 SYCP2LQ5T4T6 812 aa18.74■□□□□ 0.59
NPHP4-209ENST00000489180 BEGAINQ9BUH8 593 aa18.74■□□□□ 0.59
NPHP4-209ENST00000489180 OSBPL1AQ9BXW6 950 aa18.74■□□□□ 0.59
NPHP4-209ENST00000489180 KLHL11Q9NVR0 708 aa18.74■□□□□ 0.59
NPHP4-209ENST00000489180 HSPA8P11142 646 aaKnown RBP18.74■□□□□ 0.59
NPHP4-209ENST00000489180 GPC3P51654 580 aa18.74■□□□□ 0.59
NPHP4-209ENST00000489180 RAD23BP54727 409 aa18.74■□□□□ 0.59
NPHP4-209ENST00000489180 KRT17Q04695 432 aa18.74■□□□□ 0.59
NPHP4-209ENST00000489180 ALDH8A1Q9H2A2 487 aaPredicted RBP18.74■□□□□ 0.59
NPHP4-209ENST00000489180 EMSYQ7Z589 1322 aa18.74■□□□□ 0.59
NPHP4-209ENST00000489180 A0A1W2PQC6 194 aa18.74■□□□□ 0.59
NPHP4-209ENST00000489180 PSMC1P62191 440 aaKnown RBP18.74■□□□□ 0.59
NPHP4-209ENST00000489180 KIAA1841Q6NSI8 718 aa18.74■□□□□ 0.59
NPHP4-209ENST00000489180 C1orf228Q6PIY5 440 aa18.74■□□□□ 0.59
NPHP4-209ENST00000489180 RASSF3Q86WH2 238 aa18.74■□□□□ 0.59
NPHP4-209ENST00000489180 GUF1Q8N442 669 aaKnown RBP18.74■□□□□ 0.59
NPHP4-209ENST00000489180 AGR3Q8TD06 166 aa18.74■□□□□ 0.59
NPHP4-209ENST00000489180 SMARCAL1Q9NZC9 954 aa18.74■□□□□ 0.59
NPHP4-209ENST00000489180 STOML1Q9UBI4 398 aa18.74■□□□□ 0.59
NPHP4-209ENST00000489180 H3BRJ5 948 aa18.74■□□□□ 0.59
NPHP4-209ENST00000489180 POU5F1BQ06416 359 aa18.74■□□□□ 0.59
NPHP4-209ENST00000489180 BTBD6Q96KE9 485 aa18.74■□□□□ 0.59
NPHP4-209ENST00000489180 FSD1LQ9BXM9 530 aa18.74■□□□□ 0.59
NPHP4-209ENST00000489180 TRPC5Q9UL62 973 aaPredicted RBP18.74■□□□□ 0.59
NPHP4-209ENST00000489180 MCF2P10911 925 aa18.73■□□□□ 0.59
NPHP4-209ENST00000489180 ANKMY2Q8IV38 441 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms