RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 UBA6A0AVT1 1052 aaPredicted RBP5.3□□□□□ -1.56
SMC4-220ENST00000488017 FAM153BP0C7A2 387 aa5.3□□□□□ -1.56
SMC4-220ENST00000488017 ZEB1P37275 1124 aaPredicted RBP5.3□□□□□ -1.56
SMC4-220ENST00000488017 BCAR1P56945 870 aa5.3□□□□□ -1.56
SMC4-220ENST00000488017 ARHGAP44Q17R89 818 aa5.3□□□□□ -1.56
SMC4-220ENST00000488017 TMEM177Q53S58 311 aa5.3□□□□□ -1.56
SMC4-220ENST00000488017 TRIM61Q5EBN2 209 aa5.3□□□□□ -1.56
SMC4-220ENST00000488017 ZNF362Q5T0B9 420 aaPredicted RBP5.3□□□□□ -1.56
SMC4-220ENST00000488017 NELL1Q92832 810 aa5.3□□□□□ -1.56
SMC4-220ENST00000488017 KCNH6Q9H252 994 aa5.3□□□□□ -1.56
SMC4-220ENST00000488017 SFMBT1Q9UHJ3 866 aa5.3□□□□□ -1.56
SMC4-220ENST00000488017 DNAI1Q9UI46 699 aa5.3□□□□□ -1.56
SMC4-220ENST00000488017 SYNPO2Q9UMS6 1093 aa5.3□□□□□ -1.56
SMC4-220ENST00000488017 TMEM200CA6NKL6 621 aa5.29□□□□□ -1.56
SMC4-220ENST00000488017 TCF3P15923 654 aa5.29□□□□□ -1.56
SMC4-220ENST00000488017 HK1P19367 917 aa5.29□□□□□ -1.56
SMC4-220ENST00000488017 AVPR1BP47901 424 aa5.29□□□□□ -1.56
SMC4-220ENST00000488017 TTC38Q5R3I4 469 aa5.29□□□□□ -1.56
SMC4-220ENST00000488017 ARHGEF19Q8IW93 802 aa5.29□□□□□ -1.56
SMC4-220ENST00000488017 RPGRQ92834 1020 aaKnown RBP5.29□□□□□ -1.56
SMC4-220ENST00000488017 R3HDMLQ9H3Y0 253 aa5.29□□□□□ -1.56
SMC4-220ENST00000488017 SERHL2Q9H4I8 314 aa5.29□□□□□ -1.56
SMC4-220ENST00000488017 ACSS2Q9NR19 701 aa5.29□□□□□ -1.56
SMC4-220ENST00000488017 AHRRA9YTQ3 701 aa5.28□□□□□ -1.56
SMC4-220ENST00000488017 MAFGO15525 162 aa5.28□□□□□ -1.56
SMC4-220ENST00000488017 DIAPH1O60610 1272 aaKnown RBP5.28□□□□□ -1.56
SMC4-220ENST00000488017 KCNA6P17658 529 aa5.28□□□□□ -1.56
SMC4-220ENST00000488017 MAN2A1Q16706 1144 aa5.28□□□□□ -1.56
SMC4-220ENST00000488017 LCE1AQ5T7P2 110 aa5.28□□□□□ -1.56
SMC4-220ENST00000488017 NME9Q86XW9 330 aa5.28□□□□□ -1.56
SMC4-220ENST00000488017 CKAP2LQ8IYA6 745 aa5.28□□□□□ -1.56
SMC4-220ENST00000488017 GLB1L3Q8NCI6 653 aaPredicted RBP5.28□□□□□ -1.56
SMC4-220ENST00000488017 COQ10AQ96MF6 247 aa5.28□□□□□ -1.56
SMC4-220ENST00000488017 OSBPL6Q9BZF3 934 aa5.28□□□□□ -1.56
SMC4-220ENST00000488017 ZNF768Q9H5H4 540 aaKnown RBP5.28□□□□□ -1.56
SMC4-220ENST00000488017 SYBUQ9NX95 663 aa5.28□□□□□ -1.56
SMC4-220ENST00000488017 EIF2B4Q9UI10 523 aaKnown RBP5.28□□□□□ -1.56
SMC4-220ENST00000488017 INSL6Q9Y581 213 aa5.28□□□□□ -1.56
SMC4-220ENST00000488017 NRP1O14786 923 aa5.27□□□□□ -1.57
SMC4-220ENST00000488017 HOXA3O43365 443 aaPredicted RBP5.27□□□□□ -1.57
SMC4-220ENST00000488017 STC2O76061 302 aa5.27□□□□□ -1.57
SMC4-220ENST00000488017 HNRNPLP14866 589 aaKnown RBP eCLIP5.27□□□□□ -1.57
SMC4-220ENST00000488017 KIF11P52732 1056 aa5.27□□□□□ -1.57
SMC4-220ENST00000488017 KRTAP10-6P60371 365 aaPredicted RBP5.27□□□□□ -1.57
SMC4-220ENST00000488017 VPS72Q15906 364 aa5.27□□□□□ -1.57
SMC4-220ENST00000488017 FBXO42Q6P3S6 717 aa5.27□□□□□ -1.57
SMC4-220ENST00000488017 IGSF22Q8N9C0 903 aa5.27□□□□□ -1.57
SMC4-220ENST00000488017 SCLYQ96I15 445 aa5.27□□□□□ -1.57
SMC4-220ENST00000488017 CPPED1Q9BRF8 314 aaPredicted RBP5.27□□□□□ -1.57
SMC4-220ENST00000488017 NDC1Q9BTX1 674 aa5.27□□□□□ -1.57
SMC4-220ENST00000488017 WDR11Q9BZH6 1224 aa5.27□□□□□ -1.57
SMC4-220ENST00000488017 ENKD1Q9H0I2 346 aa5.27□□□□□ -1.57
SMC4-220ENST00000488017 PRDM13Q9H4Q3 707 aa5.27□□□□□ -1.57
SMC4-220ENST00000488017 TCRBV16S1A1N1A0A5B0 115 aa5.26□□□□□ -1.57
SMC4-220ENST00000488017 GAGE12BA1L429 117 aa5.26□□□□□ -1.57
SMC4-220ENST00000488017 GAGE12HA6NDE8 117 aa5.26□□□□□ -1.57
SMC4-220ENST00000488017 RNASET2O00584 256 aaKnown RBP5.26□□□□□ -1.57
SMC4-220ENST00000488017 CYP17A1P05093 508 aa5.26□□□□□ -1.57
SMC4-220ENST00000488017 TYRP1P17643 537 aa5.26□□□□□ -1.57
SMC4-220ENST00000488017 ERCC6LQ2NKX8 1250 aa5.26□□□□□ -1.57
SMC4-220ENST00000488017 PRR16Q569H4 304 aa5.26□□□□□ -1.57
SMC4-220ENST00000488017 PRAMEF9Q5VWM5 478 aa5.26□□□□□ -1.57
SMC4-220ENST00000488017 CCDC62Q6P9F0 684 aa5.26□□□□□ -1.57
SMC4-220ENST00000488017 FAM83AQ86UY5 434 aa5.26□□□□□ -1.57
SMC4-220ENST00000488017 LCORLQ8N3X6 602 aa5.26□□□□□ -1.57
SMC4-220ENST00000488017 OR52N2Q8NGI0 321 aa5.26□□□□□ -1.57
SMC4-220ENST00000488017 LINC00476Q8WZB0 136 aa5.26□□□□□ -1.57
SMC4-220ENST00000488017 DCLRE1CQ96SD1 692 aaKnown RBP5.26□□□□□ -1.57
SMC4-220ENST00000488017 PITHD1Q9GZP4 211 aaPredicted RBP5.26□□□□□ -1.57
SMC4-220ENST00000488017 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.26□□□□□ -1.57
SMC4-220ENST00000488017 SPATA31A6Q5VVP1 1343 aa5.25□□□□□ -1.57
SMC4-220ENST00000488017 A0A0A6YYJ9 748 aa5.25□□□□□ -1.57
SMC4-220ENST00000488017 KCNQ2O43526 872 aa5.25□□□□□ -1.57
SMC4-220ENST00000488017 LPXNO60711 386 aa5.25□□□□□ -1.57
SMC4-220ENST00000488017 FSBPO95073 299 aa5.25□□□□□ -1.57
SMC4-220ENST00000488017 MECP2P51608 486 aaKnown RBP5.25□□□□□ -1.57
SMC4-220ENST00000488017 EPHA7Q15375 998 aa5.25□□□□□ -1.57
SMC4-220ENST00000488017 ABHD17CQ6PCB6 329 aa5.25□□□□□ -1.57
SMC4-220ENST00000488017 UIMC1Q96RL1 719 aa5.25□□□□□ -1.57
SMC4-220ENST00000488017 TUBGCP5Q96RT8 1024 aa5.25□□□□□ -1.57
SMC4-220ENST00000488017 ANKFY1Q9P2R3 1169 aa5.25□□□□□ -1.57
SMC4-220ENST00000488017 KDM2BQ8NHM5 1336 aa5.24□□□□□ -1.57
SMC4-220ENST00000488017 DVL2O14641 736 aa5.24□□□□□ -1.57
SMC4-220ENST00000488017 DNAJC6O75061 913 aa5.24□□□□□ -1.57
SMC4-220ENST00000488017 STK10O94804 968 aaKnown RBP5.24□□□□□ -1.57
SMC4-220ENST00000488017 BMPR1AP36894 532 aa5.24□□□□□ -1.57
SMC4-220ENST00000488017 ELLP55199 621 aaPredicted RBP5.24□□□□□ -1.57
SMC4-220ENST00000488017 WNT3AP56704 352 aa5.24□□□□□ -1.57
SMC4-220ENST00000488017 BLOC1S1P78537 153 aa5.24□□□□□ -1.57
SMC4-220ENST00000488017 FAM189BP81408 668 aa5.24□□□□□ -1.57
SMC4-220ENST00000488017 MYBPC3Q14896 1274 aa5.24□□□□□ -1.57
SMC4-220ENST00000488017 FAM214AQ32MH5 1076 aa5.24□□□□□ -1.57
SMC4-220ENST00000488017 DOK3Q7L591 496 aa5.24□□□□□ -1.57
SMC4-220ENST00000488017 KANSL1Q7Z3B3 1105 aa5.24□□□□□ -1.57
SMC4-220ENST00000488017 LILRA3Q8N6C8 439 aaPredicted RBP5.24□□□□□ -1.57
SMC4-220ENST00000488017 AKIP1Q9NQ31 210 aa5.24□□□□□ -1.57
SMC4-220ENST00000488017 DKK2Q9UBU2 259 aa5.24□□□□□ -1.57
SMC4-220ENST00000488017 EPN1Q9Y6I3 576 aaPredicted RBP5.24□□□□□ -1.57
SMC4-220ENST00000488017 CCDC163A0A0D9SF12 145 aa5.23□□□□□ -1.57
SMC4-220ENST00000488017 ZNF185O15231 689 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms